Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
rna-TanjilR_03145 | rna-TanjilR_03145_La_Tanjil_v1.0-protein | Lupinus angustifolius | polypeptide |
rna-TanjilR_03145_La_Tanjil_v1.0 | rna-TanjilR_03145_La_Tanjil_v1.0 | Lupinus angustifolius | polypeptide |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
rna-TanjilR_03145_La_Tanjil_v1.0-CDS-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:2653773..2654435 | rna-TanjilR_03145_La_Tanjil_v1.0-CDS-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:2653773..2654435 | Lupinus angustifolius | CDS |
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
rna-TanjilR_03145_La_Tanjil_v1.0-exon-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:2653773..2654435 | rna-TanjilR_03145_La_Tanjil_v1.0-exon-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:2653773..2654435 | Lupinus angustifolius | exon |
Homology
BLAST of rna-TanjilR_03145 vs. DB:Swiss
Match:
NHL1_ARATH (NDR1/HIN1-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=NHL1 PE=2 SV=1)
HSP 1 Score: 190.274 bits (482), Expect = 7.368e-60
Identity = 89/176 (50.57%), Postives = 126/176 (71.59%), Query Frame = 1
Query: 133 PTKPTFMLQDATVFAFNLSSTQPPSFVPIPNTITITMQVTLLAHNPNKRIGIYYQKLNVYASYRNQQISLATAIPATYQGHKDFTVWSPFLFGAAVPVSPYTLSSLQQDQNGGAVMVNLKVNGRVKWRVGNWISGRYHIFVNCPAYIRFAGDRNGGVGVVAPAVKFQVLQSCSVDV 660
P+KP F+LQDATV+AFN+S P N +T Q+TL + NPN +IGIYY +L+VYA+YR+QQI+ T+IP TYQGHKD +WSPF++G +VP++P+ SL D++ G V++ ++ +GRV+W+VG +I+G+YH+ V CPAYI F G++ GV V AVK+ SCSV V
Sbjct: 42 PSKPRFILQDATVYAFNVSGNPP-------NLLTSNFQITLSSRNPNNKIGIYYDRLDVYATYRSQQITFPTSIPPTYQGHKDVDIWSPFVYGTSVPIAPFNGVSLDTDKDNGVVLLIIRADGRVRWKVGTFITGKYHLHVKCPAYINF-GNKANGVIVGDNAVKYTFTTSCSVSV 209
BLAST of rna-TanjilR_03145 vs. DB:Swiss
Match:
NHL12_ARATH (NDR1/HIN1-like protein 12 OS=Arabidopsis thaliana OX=3702 GN=NHL12 PE=2 SV=1)
HSP 1 Score: 189.889 bits (481), Expect = 1.065e-59
Identity = 110/220 (50.00%), Postives = 153/220 (69.55%), Query Frame = 1
Query: 1 MSVKECGHHGDEERSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTKPTFMLQDATVFAFNLSSTQPPSFVPIPNTITITMQVTLLAHNPNKRIGIYYQKLNVYASYRNQQISLATAIPATYQGHKDFTVWSPFLFGAAVPVSPYTLSSLQQDQNGGAVMVNLKVNGRVKWRVGNWISGRYHIFVNCPAYIRFAGDRNGGVGVVAPAVKFQVLQSCSVDV 660
M+ K+CG+HG RI GVI+ I+++L IFL+WIIL+PTKP F+LQDATV+AFNLS PN +T Q+T+ + N N RIGIYY +L+VYA+YRNQQI+L TAIP TYQGHK+ VWSPF++G +VP++P+ +L +QN G V + ++ +GRV+W+VG I+G+YH+ V C A+I A D+ GV V AVK+ ++ CSV+V
Sbjct: 1 MTTKDCGNHGGGGGGGTASRICGVIIGFIIIVLITIFLVWIILQPTKPRFILQDATVYAFNLSQ---------PNLLTSNFQITIASRNRNSRIGIYYDRLHVYATYRNQQITLRTAIPPTYQGHKEDNVWSPFVYGNSVPIAPFNAVALGDEQNRGFVTLIIRADGRVRWKVGTLITGKYHLHVRCQAFINLA-DKAAGVHVGENAVKYMLINKCSVNV 210
BLAST of rna-TanjilR_03145 vs. DB:Swiss
Match:
NHL26_ARATH (NDR1/HIN1-like protein 26 OS=Arabidopsis thaliana OX=3702 GN=NHL26 PE=2 SV=1)
HSP 1 Score: 120.553 bits (301), Expect = 1.092e-32
Identity = 51/150 (34.00%), Postives = 95/150 (63.33%), Query Frame = 1
Query: 133 PTKPTFMLQDATVFAFNLSSTQPPSFVPIPNTITITMQVTLLAHNPNKRIGIYYQKLNVYASYRNQQISLATAIPATYQGHKDFTVWSPFLFGAAVPVSPYTLSSLQQDQNGGAVMVNLKVNGRVKWRVGNWISGRYHIFVNCPAYIRFA 582
P +P F L +A +++ NL+++ + + ++Q+TL + NPNK++GIYY KL VYA+YR QQI+ ++P YQ H++ + + FL G +PV+ + ++++ G +++ +K++G+++W++G W+SG Y VNC A + F
Sbjct: 51 PERPEFSLTEADIYSLNLTTSST-------HLLNSSVQLTLFSKNPNKKVGIYYDKLLVYAAYRGQQITSEASLPPFYQSHEEINLLTAFLQGTELPVAQSFGYQISRERSTGKIIIGMKMDGKLRWKIGTWVSGAYRFNVNCLAIVAFG 193
BLAST of rna-TanjilR_03145 vs. DB:Swiss
Match:
NHL10_ARATH (NDR1/HIN1-like protein 10 OS=Arabidopsis thaliana OX=3702 GN=NHL10 PE=2 SV=1)
HSP 1 Score: 61.6178 bits (148), Expect = 2.168e-10
Identity = 41/144 (28.47%), Postives = 71/144 (49.31%), Query Frame = 1
Query: 133 PTKPTFMLQDATVFAFNLSSTQPPSFVPIPNTITITMQVTLLAHNPNKRIGIYYQKLNVYASYRNQQISLATAIPATYQGHKDFTVWSPFLFGAAVPVSPYTLS-SLQQDQNGGAVMVNLKVNGRVKWRVGNWISGRYHIFVNC 561
P F + DA++ F+ +S N + + +T+ NPNKRIG+YY ++ +A Y ++ S T P YQGHK+ TV +P G + + S +L ++ G + +K RV++++G+ R V+C
Sbjct: 65 PRAIKFHVTDASLTRFDHTSPD--------NILRYNLALTVPVRNPNKRIGLYYDRIEAHAYYEGKRFSTITLTPF-YQGHKNTTVLTPTFQGQNLVIFNAGQSRTLNAERISGVYNIEIKFRLRVRFKLGDLKFRRIKPKVDC 199
BLAST of rna-TanjilR_03145 vs. DB:Swiss
Match:
NHL3_ARATH (NDR1/HIN1-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=NHL3 PE=1 SV=1)
HSP 1 Score: 60.4622 bits (145), Expect = 6.048e-10
Identity = 44/176 (25.00%), Postives = 72/176 (40.91%), Query Frame = 1
Query: 133 PTKPTFMLQDATVFAFNLSSTQPPSFVPIPNTITITMQVTLLAHNPNKRIGIYYQKLNVYASYRNQQISLATAIPATYQGHKDFTVWSPFLFG-AAVPVSPYTLSSLQQDQNGGAVMVNLKVNGRVKWRVGNWISGRYHIFVNCPAYIRFAGDRNGGVGVVAPAVKFQVLQSCSVD 657
P F + DA + F L T N + + + NPN+RIG+YY ++ V Y +Q+ ++ I YQGHK+ TV L G V + L +D N ++ K+ +++++ G S R+ + C + + G V P C VD
Sbjct: 72 PNAIKFHVTDAKLTEFTLDPT---------NNLRYNLDLNFTIRNPNRRIGVYYDEIEVRGYYGDQRFGMSNNISKFYQGHKNTTVVGTKLVGQQLVLLDGGERKDLNEDVNSQIYRIDAKLRLKIRFKFGLIKSWRFKPKIKCDLKVPLTSNSTSGF-VFQPT-------KCDVD 230
BLAST of rna-TanjilR_03145 vs. DB:Swiss
Match:
NHL6_ARATH (NDR1/HIN1-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=NHL6 PE=1 SV=1)
HSP 1 Score: 54.6842 bits (130), Expect = 9.980e-8
Identity = 38/141 (26.95%), Postives = 69/141 (48.94%), Query Frame = 1
Query: 223 NTITITMQVTLLAHNPNKRIGIYYQ---KLNVYASYRNQQISLATAIPATYQGHKDFTVWSPFLFGAAVPVSPYTLSSLQQDQNGGAVMVNLKVNGRVKWRVGNWISGRYHIFVNCPAYIRFAGDRNGGVGVVAPAVKFQV 636
+++T VT+ A NPN++IGIYY+ K+ V+ Y Q+S ++P YQGH++ TV + G S + +Q Q G + + ++VN V+ + G V C ++ N + + + + KF++
Sbjct: 114 SSLTTAFNVTITAKNPNEKIGIYYEDGSKITVW--YMEHQLS-NGSLPKFYQGHENTTVIYVEMTGQTQNASGLRTTLEEQQQRTGNIPLRIRVNQPVRVKFGKLKLFEVRFLVRCGVFVDSLAT-NNVIKIQSSSCKFRL 250
The following BLAST results are available for this feature:
Sequences
The
following sequences are available for this feature:
mRNA sequence
>rna-TanjilR_03145_La_Tanjil_v1.0 ID=rna-TanjilR_03145_La_Tanjil_v1.0; Name=rna-TanjilR_03145; organism=Lupinus angustifolius; type=mRNA; length=663bp
ATGTCCGTGAAGGAATGCGGCCACCACGGCGATGAGGAGCGGAGCGCACT
CCTCCGCCGCATATTCGGCGTCATCGTGGTCCTCATCGTCCTCATCCTCT
TCATCATCTTCCTAATATGGATCATCCTCCGTCCCACCAAACCAACCTTC
ATGCTCCAAGACGCCACCGTTTTCGCCTTTAACCTATCTTCCACTCAACC
TCCTTCCTTTGTTCCCATCCCCAACACAATCACCATCACAATGCAAGTAA
CACTCTTAGCTCATAACCCTAACAAACGAATCGGAATCTATTACCAGAAG
CTAAATGTTTATGCTTCTTACCGGAACCAACAGATCTCACTTGCCACGGC
GATTCCAGCCACTTACCAGGGCCACAAGGACTTCACCGTATGGTCGCCGT
TTCTGTTCGGCGCCGCCGTGCCGGTGTCTCCTTACACGTTGAGTTCTCTG
CAGCAGGATCAGAATGGTGGTGCTGTTATGGTCAACCTTAAAGTCAACGG
GAGGGTGAAGTGGAGGGTGGGGAATTGGATCTCTGGGAGGTACCATATAT
TTGTGAACTGTCCGGCATATATAAGGTTCGCCGGAGATCGGAACGGTGGG
GTTGGAGTTGTGGCTCCGGCAGTGAAGTTTCAGGTTCTTCAGAGTTGCAG
TGTTGATGTTTAG
back to topprotein sequence of rna-TanjilR_03145_La_Tanjil_v1.0
>rna-TanjilR_03145_La_Tanjil_v1.0 ID=rna-TanjilR_03145_La_Tanjil_v1.0; Name=rna-TanjilR_03145_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=220bp
MSVKECGHHGDEERSALLRRIFGVIVVLIVLILFIIFLIWIILRPTKPTF
MLQDATVFAFNLSSTQPPSFVPIPNTITITMQVTLLAHNPNKRIGIYYQK
LNVYASYRNQQISLATAIPATYQGHKDFTVWSPFLFGAAVPVSPYTLSSL
QQDQNGGAVMVNLKVNGRVKWRVGNWISGRYHIFVNCPAYIRFAGDRNGG
VGVVAPAVKFQVLQSCSVDV
back to topmRNA from alignment at Chr_LG07-CM007367.1:2653773..2654435-
Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_03145_La_Tanjil_v1.0 ID=rna-TanjilR_03145_La_Tanjil_v1.0; Name=rna-TanjilR_03145; organism=Lupinus angustifolius; type=mRNA; length=663bp; location=Sequence derived from: Chr_LG07-CM007367.1:2653773..2654435- (Lupinus angustifolius
ATGTCCGTGAAGGAATGCGGCCACCACGGCGATGAGGAGCGGAGCGCACT
CCTCCGCCGCATATTCGGCGTCATCGTGGTCCTCATCGTCCTCATCCTCT
TCATCATCTTCCTAATATGGATCATCCTCCGTCCCACCAAACCAACCTTC
ATGCTCCAAGACGCCACCGTTTTCGCCTTTAACCTATCTTCCACTCAACC
TCCTTCCTTTGTTCCCATCCCCAACACAATCACCATCACAATGCAAGTAA
CACTCTTAGCTCATAACCCTAACAAACGAATCGGAATCTATTACCAGAAG
CTAAATGTTTATGCTTCTTACCGGAACCAACAGATCTCACTTGCCACGGC
GATTCCAGCCACTTACCAGGGCCACAAGGACTTCACCGTATGGTCGCCGT
TTCTGTTCGGCGCCGCCGTGCCGGTGTCTCCTTACACGTTGAGTTCTCTG
CAGCAGGATCAGAATGGTGGTGCTGTTATGGTCAACCTTAAAGTCAACGG
GAGGGTGAAGTGGAGGGTGGGGAATTGGATCTCTGGGAGGTACCATATAT
TTGTGAACTGTCCGGCATATATAAGGTTCGCCGGAGATCGGAACGGTGGG
GTTGGAGTTGTGGCTCCGGCAGTGAAGTTTCAGGTTCTTCAGAGTTGCAG
TGTTGATGTTTAG
back to topCoding sequence (CDS) from alignment at Chr_LG07-CM007367.1:2653773..2654435-
>rna-TanjilR_03145_La_Tanjil_v1.0 ID=rna-TanjilR_03145_La_Tanjil_v1.0; Name=rna-TanjilR_03145; organism=Lupinus angustifolius; type=CDS; length=663bp; location=Sequence derived from: Chr_LG07-CM007367.1:2653773..2654435- (Lupinus angustifolius
ATGTCCGTGAAGGAATGCGGCCACCACGGCGATGAGGAGCGGAGCGCACT
CCTCCGCCGCATATTCGGCGTCATCGTGGTCCTCATCGTCCTCATCCTCT
TCATCATCTTCCTAATATGGATCATCCTCCGTCCCACCAAACCAACCTTC
ATGCTCCAAGACGCCACCGTTTTCGCCTTTAACCTATCTTCCACTCAACC
TCCTTCCTTTGTTCCCATCCCCAACACAATCACCATCACAATGCAAGTAA
CACTCTTAGCTCATAACCCTAACAAACGAATCGGAATCTATTACCAGAAG
CTAAATGTTTATGCTTCTTACCGGAACCAACAGATCTCACTTGCCACGGC
GATTCCAGCCACTTACCAGGGCCACAAGGACTTCACCGTATGGTCGCCGT
TTCTGTTCGGCGCCGCCGTGCCGGTGTCTCCTTACACGTTGAGTTCTCTG
CAGCAGGATCAGAATGGTGGTGCTGTTATGGTCAACCTTAAAGTCAACGG
GAGGGTGAAGTGGAGGGTGGGGAATTGGATCTCTGGGAGGTACCATATAT
TTGTGAACTGTCCGGCATATATAAGGTTCGCCGGAGATCGGAACGGTGGG
GTTGGAGTTGTGGCTCCGGCAGTGAAGTTTCAGGTTCTTCAGAGTTGCAG
TGTTGATGTTTAG
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