rna-TanjilR_02989
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_02989 vs. DB:Swiss
Match: MYBF_ARATH (Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana OX=3702 GN=At1g14600 PE=2 SV=2) HSP 1 Score: 56.9954 bits (136), Expect = 7.340e-15 Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 1
Query: 211 GIVRPYVRSKMPRLRWTRDLHLAFVHAIERLGGQ 312
G VRPYVRS +PRLRWT +LH +FVHA++ LGGQ
Sbjct: 13 GGVRPYVRSPVPRLRWTPELHRSFVHAVDLLGGQ 46 HSP 2 Score: 46.9802 bits (110), Expect = 7.340e-15 Identity = 20/27 (74.07%), Postives = 27/27 (100.00%), Query Frame = 2
Query: 410 ATPKLVLQLMDVRGLSIAHVKSHLQVH 490
ATPKLVL++MDV+GL+I+HVKSHLQ++
Sbjct: 49 ATPKLVLKIMDVKGLTISHVKSHLQMY 75
BLAST of rna-TanjilR_02989 vs. DB:Swiss
Match: KAN1_ARATH (Transcription repressor KAN1 OS=Arabidopsis thaliana OX=3702 GN=KAN1 PE=1 SV=1) HSP 1 Score: 45.4394 bits (106), Expect = 6.986e-10 Identity = 22/34 (64.71%), Postives = 28/34 (82.35%), Query Frame = 2
Query: 410 ATPKLVLQLMDVRGLSIAHVKSHLQVHS*VYTNN 511
ATPK VL+LMDV+ L++AHVKSHLQ++ V T N
Sbjct: 245 ATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTN 278 HSP 2 Score: 41.5874 bits (96), Expect = 6.986e-10 Identity = 19/32 (59.38%), Postives = 22/32 (68.75%), Query Frame = 1
Query: 223 PYVRS-KMPRLRWTRDLHLAFVHAIERLGGQE 315
P RS + PR+RWT LH FVHA+E LGG E
Sbjct: 212 PTKRSMRAPRMRWTSSLHARFVHAVELLGGHE 243
BLAST of rna-TanjilR_02989 vs. DB:Swiss
Match: KAN2_ARATH (Probable transcription factor KAN2 OS=Arabidopsis thaliana OX=3702 GN=KAN2 PE=2 SV=1) HSP 1 Score: 44.2838 bits (103), Expect = 1.768e-9 Identity = 21/32 (65.62%), Postives = 27/32 (84.38%), Query Frame = 2
Query: 410 ATPKLVLQLMDVRGLSIAHVKSHLQVHS*VYT 505
ATPK VL+LMDV+ L++AHVKSHLQ++ V T
Sbjct: 239 ATPKSVLELMDVKDLTLAHVKSHLQMYRTVKT 270 HSP 2 Score: 41.2022 bits (95), Expect = 1.768e-9 Identity = 16/26 (61.54%), Postives = 19/26 (73.08%), Query Frame = 1
Query: 238 KMPRLRWTRDLHLAFVHAIERLGGQE 315
+ PR+RWT LH FVHA+E LGG E
Sbjct: 212 RAPRMRWTTTLHARFVHAVELLGGHE 237
BLAST of rna-TanjilR_02989 vs. DB:Swiss
Match: ROLL9_ORYSJ (Probable transcription factor RL9 OS=Oryza sativa subsp. japonica OX=39947 GN=RL9 PE=2 SV=2) HSP 1 Score: 43.1282 bits (100), Expect = 3.843e-9 Identity = 19/27 (70.37%), Postives = 25/27 (92.59%), Query Frame = 2
Query: 410 ATPKLVLQLMDVRGLSIAHVKSHLQVH 490
ATPK VL+LMDV+ L++AHVKSHLQ++
Sbjct: 350 ATPKSVLELMDVKDLTLAHVKSHLQMY 376 HSP 2 Score: 41.2022 bits (95), Expect = 3.843e-9 Identity = 16/26 (61.54%), Postives = 19/26 (73.08%), Query Frame = 1
Query: 238 KMPRLRWTRDLHLAFVHAIERLGGQE 315
+ PR+RWT LH FVHA+E LGG E
Sbjct: 323 RAPRMRWTSTLHARFVHAVELLGGHE 348
BLAST of rna-TanjilR_02989 vs. DB:Swiss
Match: KAN3_ARATH (Probable transcription factor KAN3 OS=Arabidopsis thaliana OX=3702 GN=KAN3 PE=2 SV=1) HSP 1 Score: 43.1282 bits (100), Expect = 5.291e-9 Identity = 19/27 (70.37%), Postives = 25/27 (92.59%), Query Frame = 2
Query: 410 ATPKLVLQLMDVRGLSIAHVKSHLQVH 490
ATPK VL+LMDV+ L++AHVKSHLQ++
Sbjct: 190 ATPKSVLELMDVQDLTLAHVKSHLQMY 216 HSP 2 Score: 40.817 bits (94), Expect = 5.291e-9 Identity = 15/26 (57.69%), Postives = 19/26 (73.08%), Query Frame = 1
Query: 238 KMPRLRWTRDLHLAFVHAIERLGGQE 315
+ PR+RWT LH FVHA++ LGG E
Sbjct: 163 RAPRMRWTTTLHAHFVHAVQLLGGHE 188
BLAST of rna-TanjilR_02989 vs. DB:Swiss
Match: KAN4_ARATH (Probable transcription factor KAN4 OS=Arabidopsis thaliana OX=3702 GN=KAN4 PE=1 SV=1) HSP 1 Score: 41.2022 bits (95), Expect = 2.433e-8 Identity = 18/27 (66.67%), Postives = 25/27 (92.59%), Query Frame = 2
Query: 410 ATPKLVLQLMDVRGLSIAHVKSHLQVH 490
ATPK VL+LM+V+ L++AHVKSHLQ++
Sbjct: 131 ATPKSVLELMNVKDLTLAHVKSHLQMY 157 HSP 2 Score: 40.4318 bits (93), Expect = 2.433e-8 Identity = 15/26 (57.69%), Postives = 19/26 (73.08%), Query Frame = 1
Query: 238 KMPRLRWTRDLHLAFVHAIERLGGQE 315
+ PR+RWT LH FVHA++ LGG E
Sbjct: 104 RAPRMRWTSTLHAHFVHAVQLLGGHE 129
BLAST of rna-TanjilR_02989 vs. DB:Swiss
Match: PHR1_ORYSI (Protein PHOSPHATE STARVATION RESPONSE 1 OS=Oryza sativa subsp. indica OX=39946 GN=PHR1 PE=3 SV=1) HSP 1 Score: 40.0466 bits (92), Expect = 1.528e-7 Identity = 14/23 (60.87%), Postives = 19/23 (82.61%), Query Frame = 1
Query: 247 RLRWTRDLHLAFVHAIERLGGQE 315
R+RWT +LH +FVHA+ +LGG E
Sbjct: 218 RMRWTPELHESFVHAVNKLGGSE 240 HSP 2 Score: 39.2762 bits (90), Expect = 1.528e-7 Identity = 19/27 (70.37%), Postives = 22/27 (81.48%), Query Frame = 2
Query: 410 ATPKLVLQLMDVRGLSIAHVKSHLQVH 490
ATPK VL+LM V GL+I HVKSHLQ +
Sbjct: 242 ATPKGVLKLMKVDGLTIYHVKSHLQKY 268
BLAST of rna-TanjilR_02989 vs. DB:Swiss
Match: PHR1_ORYSJ (Protein PHOSPHATE STARVATION RESPONSE 1 OS=Oryza sativa subsp. japonica OX=39947 GN=PHR1 PE=2 SV=1) HSP 1 Score: 40.0466 bits (92), Expect = 1.579e-7 Identity = 14/23 (60.87%), Postives = 19/23 (82.61%), Query Frame = 1
Query: 247 RLRWTRDLHLAFVHAIERLGGQE 315
R+RWT +LH +FVHA+ +LGG E
Sbjct: 218 RMRWTPELHESFVHAVNKLGGSE 240 HSP 2 Score: 39.2762 bits (90), Expect = 1.579e-7 Identity = 19/27 (70.37%), Postives = 22/27 (81.48%), Query Frame = 2
Query: 410 ATPKLVLQLMDVRGLSIAHVKSHLQVH 490
ATPK VL+LM V GL+I HVKSHLQ +
Sbjct: 242 ATPKGVLKLMKVDGLTIYHVKSHLQKY 268 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_02989 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 8
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_02989_La_Tanjil_v1.0 ID=rna-TanjilR_02989_La_Tanjil_v1.0; Name=rna-TanjilR_02989; organism=Lupinus angustifolius; type=mRNA; length=2664bpback to top protein sequence of rna-TanjilR_02989_La_Tanjil_v1.0 >rna-TanjilR_02989_La_Tanjil_v1.0 ID=rna-TanjilR_02989_La_Tanjil_v1.0; Name=rna-TanjilR_02989_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=404bpback to top mRNA from alignment at Chr_LG07-CM007367.1:3944804..3947467- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_02989_La_Tanjil_v1.0 ID=rna-TanjilR_02989_La_Tanjil_v1.0; Name=rna-TanjilR_02989; organism=Lupinus angustifolius; type=mRNA; length=2664bp; location=Sequence derived from: Chr_LG07-CM007367.1:3944804..3947467- (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG07-CM007367.1:3944804..3947467- >rna-TanjilR_02989_La_Tanjil_v1.0 ID=rna-TanjilR_02989_La_Tanjil_v1.0; Name=rna-TanjilR_02989; organism=Lupinus angustifolius; type=CDS; length=1215bp; location=Sequence derived from: Chr_LG07-CM007367.1:3944804..3947467- (Lupinus angustifoliusback to top |