rna-TanjilR_19787
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_19787 vs. DB:Swiss
Match: Y1390_ARATH (Uncharacterized protein At1g03900 OS=Arabidopsis thaliana OX=3702 GN=At1g03900 PE=2 SV=1) HSP 1 Score: 268.855 bits (686), Expect = 2.914e-83 Identity = 127/157 (80.89%), Postives = 143/157 (91.08%), Query Frame = 1
Query: 19 SFEHTLLVVREVSVYKIPPRTTSGGYKCAEWLQSDKIWSGRIRVVSRNDRCEIRLEDPNSGDLFAACFVYPGQRDVAVEPVLDSSRYFVLKIEDGQGKHAFVGLGFAERNEAFDFNVALSDHDKYVRREHEKESGGGDVAGEESQIDIHPAVNHRLK 489
+FEHTLLVVREVSVYKIPPRTTSGGYKC EWLQSDKIWSGR+RVVS DRCEIRLED NSGDLFAACFV PG+R+ +VEP LDSSRYFVL+I+DG+GK+AF+GLGFAERNEAFDFNVALSDH+KYVRRE EKE+ G+ + ++ IDIHPAVNHRLK
Sbjct: 11 TFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRLRVVSCKDRCEIRLEDSNSGDLFAACFVDPGRRENSVEPSLDSSRYFVLRIDDGRGKYAFIGLGFAERNEAFDFNVALSDHEKYVRREKEKET--GETSESDNHIDIHPAVNHRLK 165
BLAST of rna-TanjilR_19787 vs. DB:Swiss
Match: NECP2_HUMAN (Adaptin ear-binding coat-associated protein 2 OS=Homo sapiens OX=9606 GN=NECAP2 PE=1 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 4.291e-37 Identity = 70/137 (51.09%), Postives = 93/137 (67.88%), Query Frame = 1
Query: 7 FEEESFEHTLLVVREVSVYKIPPRTTSGGYKCAEWLQSDKIWSGRIRVVSRNDRCEIRLEDPNSGDLFAACFV--YPGQRDVAVEPVLDSSRYFVLKIEDGQGKHAFVGLGFAERNEAFDFNVALSDHDKYVRREHE 411
EE +E L V +V VY+IPPR T+ GY+ AEW WSGR+R+ ++ I+LED SG+LFA V +PG AVE V DSSRYFV++IEDG G+ AF+G+GF +R +AFDFNVAL DH K+V+++ E
Sbjct: 1 MEESGYESVLCVKPDVHVYRIPPRATNRGYRAAEWQLDQPSWSGRLRITAKGQMAYIKLEDRTSGELFAQAPVDQFPG---TAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNVALQDHFKWVKQQCE 134
BLAST of rna-TanjilR_19787 vs. DB:Swiss
Match: NECP2_MOUSE (Adaptin ear-binding coat-associated protein 2 OS=Mus musculus OX=10090 GN=Necap2 PE=1 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 4.732e-37 Identity = 71/137 (51.82%), Postives = 93/137 (67.88%), Query Frame = 1
Query: 7 FEEESFEHTLLVVREVSVYKIPPRTTSGGYKCAEWLQSDKIWSGRIRVVSRNDRCEIRLEDPNSGDLFAACFV--YPGQRDVAVEPVLDSSRYFVLKIEDGQGKHAFVGLGFAERNEAFDFNVALSDHDKYVRREHE 411
EE +E L V EV VY+IPPR T+ GY+ +EW WSGR+R+ ++ I+LED SG+LFA V +PG AVE V DSSRYFV++IEDG G+ AF+GLGF +R +AFDFNVAL DH K+V+++ E
Sbjct: 1 MEESEYESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGKVAYIKLEDRTSGELFAQAPVDQFPG---TAVESVTDSSRYFVIRIEDGNGRRAFIGLGFGDRGDAFDFNVALQDHFKWVKQQCE 134
BLAST of rna-TanjilR_19787 vs. DB:Swiss
Match: NECP2_BOVIN (Adaptin ear-binding coat-associated protein 2 OS=Bos taurus OX=9913 GN=NECAP2 PE=2 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 9.631e-37 Identity = 70/137 (51.09%), Postives = 93/137 (67.88%), Query Frame = 1
Query: 7 FEEESFEHTLLVVREVSVYKIPPRTTSGGYKCAEWLQSDKIWSGRIRVVSRNDRCEIRLEDPNSGDLFAACFV--YPGQRDVAVEPVLDSSRYFVLKIEDGQGKHAFVGLGFAERNEAFDFNVALSDHDKYVRREHE 411
EE +E L V +V VY+IPPR T+ GY+ AEW WSGR+R+ ++ I+LED SG+LFA V +PG AVE V DSSRYFV++IEDG G+ AF+G+GF +R +AFDFNVAL DH K+V+++ E
Sbjct: 1 MEEAEYESVLCVKPDVHVYRIPPRATNRGYRAAEWQLDQPSWSGRLRITAKGQVAYIKLEDRTSGELFAQAPVDQFPG---TAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNVALQDHFKWVKQQCE 134
BLAST of rna-TanjilR_19787 vs. DB:Swiss
Match: NECP2_RAT (Adaptin ear-binding coat-associated protein 2 OS=Rattus norvegicus OX=10116 GN=Necap2 PE=1 SV=2) HSP 1 Score: 142.51 bits (358), Expect = 9.915e-37 Identity = 70/137 (51.09%), Postives = 93/137 (67.88%), Query Frame = 1
Query: 7 FEEESFEHTLLVVREVSVYKIPPRTTSGGYKCAEWLQSDKIWSGRIRVVSRNDRCEIRLEDPNSGDLFAACFV--YPGQRDVAVEPVLDSSRYFVLKIEDGQGKHAFVGLGFAERNEAFDFNVALSDHDKYVRREHE 411
EE +E L V EV VY+IPPR T+ GY+ +EW WSGR+R+ ++ I+LED SG+LFA V +PG AVE V DSSRYFV++IEDG G+ AF+G+GF +R +AFDFNVAL DH K+V+++ E
Sbjct: 1 MEESEYESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGKVAYIKLEDRTSGELFAQAPVDQFPG---TAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNVALQDHFKWVKQQCE 134
BLAST of rna-TanjilR_19787 vs. DB:Swiss
Match: NECP1_PONAB (Adaptin ear-binding coat-associated protein 1 OS=Pongo abelii OX=9601 GN=NECAP1 PE=2 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 3.335e-36 Identity = 71/161 (44.10%), Postives = 104/161 (64.60%), Query Frame = 1
Query: 13 EESFEHTLLVVREVSVYKIPPRTTSGGYKCAEWLQSDKIWSGRIRVVSRNDRCEIRLEDPNSGDLFAACFV--YPGQRDVAVEPVLDSSRYFVLKIEDGQGKHAFVGLGFAERNEAFDFNVALSDHDKYVRREHEKESGGGDVAGEESQIDIHPAVNHRLK 489
E +E L V +VSVY+IPPR ++ GY+ ++W W+GR+R+ S+ I+LED SG+LFA V YPG +AVE V DSSRYFV++I+DG G+ AF+G+GF +R +AFDFNV+L DH K+V++E E ++ E ++D P ++ K
Sbjct: 4 ELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKTAYIKLEDKVSGELFAQAPVEQYPG---IAVETVTDSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFNVSLQDHFKWVKQESE-------ISKESQEMDARPKLDLGFK 154
BLAST of rna-TanjilR_19787 vs. DB:Swiss
Match: NECP1_HUMAN (Adaptin ear-binding coat-associated protein 1 OS=Homo sapiens OX=9606 GN=NECAP1 PE=1 SV=2) HSP 1 Score: 140.969 bits (354), Expect = 4.011e-36 Identity = 73/165 (44.24%), Postives = 107/165 (64.85%), Query Frame = 1
Query: 1 MSFEEESFEHTLLVVREVSVYKIPPRTTSGGYKCAEWLQSDKIWSGRIRVVSRNDRCEIRLEDPNSGDLFAACFV--YPGQRDVAVEPVLDSSRYFVLKIEDGQGKHAFVGLGFAERNEAFDFNVALSDHDKYVRREHEKESGGGDVAGEESQIDIHPAVNHRLK 489
M+ E E +E L V +VSVY+IPPR ++ GY+ ++W W+GR+R+ S+ I+LED SG+LFA V YPG +AVE V DSSRYFV++I+DG G+ AF+G+GF +R +AFDFNV+L DH K+V++E E ++ E ++D P ++ K
Sbjct: 1 MATELE-YESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKTAYIKLEDKVSGELFAQAPVEQYPG---IAVETVTDSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFNVSLQDHFKWVKQESE-------ISKESQEMDARPKLDLGFK 154
BLAST of rna-TanjilR_19787 vs. DB:Swiss
Match: NECP1_BOVIN (Adaptin ear-binding coat-associated protein 1 OS=Bos taurus OX=9913 GN=NECAP1 PE=2 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 6.030e-36 Identity = 71/161 (44.10%), Postives = 105/161 (65.22%), Query Frame = 1
Query: 13 EESFEHTLLVVREVSVYKIPPRTTSGGYKCAEWLQSDKIWSGRIRVVSRNDRCEIRLEDPNSGDLFAACFV--YPGQRDVAVEPVLDSSRYFVLKIEDGQGKHAFVGLGFAERNEAFDFNVALSDHDKYVRREHEKESGGGDVAGEESQIDIHPAVNHRLK 489
E +E L V +VSVY+IPPR ++ GY+ ++W W+GR+R+ S+ I+LED SG+LFA V YPG +AVE V DSSRYFV++I+DG G+ AF+G+GF++R +AFDFNV+L DH K+V++E E ++ E ++D P ++ K
Sbjct: 4 ELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKVAYIKLEDKVSGELFAQAPVEQYPG---IAVETVTDSSRYFVIRIQDGTGRSAFIGIGFSDRGDAFDFNVSLQDHFKWVKQESE-------ISKESQEMDSRPKLDLGFK 154
BLAST of rna-TanjilR_19787 vs. DB:Swiss
Match: NECP1_MOUSE (Adaptin ear-binding coat-associated protein 1 OS=Mus musculus OX=10090 GN=Necap1 PE=1 SV=2) HSP 1 Score: 139.813 bits (351), Expect = 1.273e-35 Identity = 71/161 (44.10%), Postives = 104/161 (64.60%), Query Frame = 1
Query: 13 EESFEHTLLVVREVSVYKIPPRTTSGGYKCAEWLQSDKIWSGRIRVVSRNDRCEIRLEDPNSGDLFAACFV--YPGQRDVAVEPVLDSSRYFVLKIEDGQGKHAFVGLGFAERNEAFDFNVALSDHDKYVRREHEKESGGGDVAGEESQIDIHPAVNHRLK 489
E +E L V +VSVY+IPPR ++ GY+ ++W W+GR+R+ S+ I+LED SG+LFA V YPG +AVE V DSSRYFV++I+DG G+ AF+G+GF +R +AFDFNV+L DH K+V++E E ++ E ++D P ++ K
Sbjct: 4 ELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKLEDKVSGELFAQAPVEQYPG---IAVETVTDSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFNVSLQDHFKWVKQETE-------ISKESQEMDNRPKLDLGFK 154
BLAST of rna-TanjilR_19787 vs. DB:Swiss
Match: NECP1_RAT (Adaptin ear-binding coat-associated protein 1 OS=Rattus norvegicus OX=10116 GN=Necap1 PE=1 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 1.325e-35 Identity = 71/161 (44.10%), Postives = 104/161 (64.60%), Query Frame = 1
Query: 13 EESFEHTLLVVREVSVYKIPPRTTSGGYKCAEWLQSDKIWSGRIRVVSRNDRCEIRLEDPNSGDLFAACFV--YPGQRDVAVEPVLDSSRYFVLKIEDGQGKHAFVGLGFAERNEAFDFNVALSDHDKYVRREHEKESGGGDVAGEESQIDIHPAVNHRLK 489
E +E L V +VSVY+IPPR ++ GY+ ++W W+GR+R+ S+ I+LED SG+LFA V YPG +AVE V DSSRYFV++I+DG G+ AF+G+GF +R +AFDFNV+L DH K+V++E E ++ E ++D P ++ K
Sbjct: 4 ELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKLEDKVSGELFAQAPVEQYPG---IAVETVADSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFNVSLQDHFKWVKQETE-------ISKESQEMDSRPKLDLGFK 154 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_19787 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_19787_La_Tanjil_v1.0 ID=rna-TanjilR_19787_La_Tanjil_v1.0; Name=rna-TanjilR_19787; organism=Lupinus angustifolius; type=mRNA; length=2259bpback to top protein sequence of rna-TanjilR_19787_La_Tanjil_v1.0 >rna-TanjilR_19787_La_Tanjil_v1.0 ID=rna-TanjilR_19787_La_Tanjil_v1.0; Name=rna-TanjilR_19787_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=279bpback to top mRNA from alignment at Chr_LG11-CM007371.1:20495390..20497648+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_19787_La_Tanjil_v1.0 ID=rna-TanjilR_19787_La_Tanjil_v1.0; Name=rna-TanjilR_19787; organism=Lupinus angustifolius; type=mRNA; length=2259bp; location=Sequence derived from: Chr_LG11-CM007371.1:20495390..20497648+ (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG11-CM007371.1:20495390..20497648+ >rna-TanjilR_19787_La_Tanjil_v1.0 ID=rna-TanjilR_19787_La_Tanjil_v1.0; Name=rna-TanjilR_19787; organism=Lupinus angustifolius; type=CDS; length=840bp; location=Sequence derived from: Chr_LG11-CM007371.1:20495390..20497648+ (Lupinus angustifoliusback to top |