rna-TanjilR_13879
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_13879 vs. DB:Swiss
Match: UGAL1_ARATH (UDP-galactose transporter 1 OS=Arabidopsis thaliana OX=3702 GN=UDP-GALT1 PE=2 SV=1) HSP 1 Score: 282.337 bits (721), Expect = 8.629e-86 Identity = 143/183 (78.14%), Postives = 149/183 (81.42%), Query Frame = 2
Query: 1070 QKLEFKFPLSVSCIHFICSSVGGYVVIKVLKLKPLIHVEPEDRWRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTGKIQ*LVTFLPPALC*NFKDILI*SW*TCTVVLQWLVWRKYFDWRIWASLIPIVGGILLASFTELSFNMFGFCAALFGCLATSTKTILAESLLHGYKFD 1618
QKL+FKFPLSVSC+HFICSS+G Y+VIKVLKLKPLI V+PEDRWRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPAT TVVLQWLVWRKYFDWRIWASL+PIVGGILL S TELSFNMFGFCAALFGCLATSTKTILAESLLHGYKFD
Sbjct: 32 QKLDFKFPLSVSCVHFICSSIGAYIVIKVLKLKPLIVVDPEDRWRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPAT------------------------------TVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTELSFNMFGFCAALFGCLATSTKTILAESLLHGYKFD 184 HSP 2 Score: 140.584 bits (353), Expect = 3.788e-35 Identity = 69/79 (87.34%), Postives = 72/79 (91.14%), Query Frame = 2
Query: 1916 SINTVYYMAPFATMILAIPAILLEGNGILEWLSIHPYPWSALIIIFTSGVLAFCLNFSIFYVIHSTTAVTFNVAGNLKV 2152
SINTVYYMAPFATMIL IPA+LLEG+GIL W HP PWSALIII +SGVLAFCLNFSIFYVIHSTTAVTFNVAGNLKV
Sbjct: 185 SINTVYYMAPFATMILGIPALLLEGSGILSWFEAHPAPWSALIIILSSGVLAFCLNFSIFYVIHSTTAVTFNVAGNLKV 263 HSP 3 Score: 99.3673 bits (246), Expect = 3.788e-21 Identity = 61/81 (75.31%), Postives = 71/81 (87.65%), Query Frame = 1
Query: 2653 VQVAVAVLVSWLIFKNPISYLNGVGCAVTLVGCTFYGYVRHMISQEPILPGXXXXXXXXXXXLSKIELLPLV-NDKLDDKV 2892
++VAVAV+VSWLIF+NPISY+N VGC +TLVGCTFYGYVRHM+SQ+ PGTPRTPRTPR SK+ELLPLV NDKL+ KV
Sbjct: 261 LKVAVAVMVSWLIFRNPISYMNAVGCGITLVGCTFYGYVRHMLSQQT--PGTPRTPRTPR---SKMELLPLVNNDKLEGKV 336
BLAST of rna-TanjilR_13879 vs. DB:Swiss
Match: GONS5_ARATH (GDP-mannose transporter GONST5 OS=Arabidopsis thaliana OX=3702 GN=GONST5 PE=2 SV=1) HSP 1 Score: 277.33 bits (708), Expect = 7.415e-84 Identity = 140/183 (76.50%), Postives = 148/183 (80.87%), Query Frame = 2
Query: 1070 QKLEFKFPLSVSCIHFICSSVGGYVVIKVLKLKPLIHVEPEDRWRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTGKIQ*LVTFLPPALC*NFKDILI*SW*TCTVVLQWLVWRKYFDWRIWASLIPIVGGILLASFTELSFNMFGFCAALFGCLATSTKTILAESLLHGYKFD 1618
QKL+FKFPLSVSC+HFICSS+G Y+VIKVLKLKPLI V+PEDRWRRIFPMSFVFCINIVLGN+SLRYIPVSFMQTIKS TPAT TVVLQWLVWRKYFDWRIWASL+PIVGGILL S TELSFN+FGFCAALFGCLATSTKTILAESLLHGYKFD
Sbjct: 38 QKLDFKFPLSVSCVHFICSSIGAYIVIKVLKLKPLIVVDPEDRWRRIFPMSFVFCINIVLGNISLRYIPVSFMQTIKSLTPAT------------------------------TVVLQWLVWRKYFDWRIWASLVPIVGGILLTSITELSFNVFGFCAALFGCLATSTKTILAESLLHGYKFD 190 HSP 2 Score: 136.732 bits (343), Expect = 8.992e-34 Identity = 67/79 (84.81%), Postives = 70/79 (88.61%), Query Frame = 2
Query: 1916 SINTVYYMAPFATMILAIPAILLEGNGILEWLSIHPYPWSALIIIFTSGVLAFCLNFSIFYVIHSTTAVTFNVAGNLKV 2152
SINTVYYMAPFATMIL +PA LLE NGIL+W HP PWSALII+F SGVLAFCLNFSIFYVI STTAVTFNVAGNLKV
Sbjct: 191 SINTVYYMAPFATMILGLPAFLLERNGILDWFEAHPSPWSALIILFNSGVLAFCLNFSIFYVIQSTTAVTFNVAGNLKV 269 HSP 3 Score: 95.9005 bits (237), Expect = 6.198e-20 Identity = 56/80 (70.00%), Postives = 69/80 (86.25%), Query Frame = 1
Query: 2653 VQVAVAVLVSWLIFKNPISYLNGVGCAVTLVGCTFYGYVRHMISQEPILPGXXXXXXXXXXXLSKIELLPLVNDKLDDKV 2892
++VAVAV VSW+IF+NPIS +N VGC +TLVGCTFYGYVRHM+SQ+ PGTPRTPRTPR +K+EL+PLVNDKL+ K+
Sbjct: 267 LKVAVAVFVSWMIFRNPISPMNAVGCGITLVGCTFYGYVRHMLSQQQ--PGTPRTPRTPR---NKMELIPLVNDKLESKI 341
BLAST of rna-TanjilR_13879 vs. DB:Swiss
Match: PT505_ARATH (Probable sugar phosphate/phosphate translocator At5g05820 OS=Arabidopsis thaliana OX=3702 GN=At5g05820 PE=2 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 1.057e-16 Identity = 55/185 (29.73%), Postives = 91/185 (49.19%), Query Frame = 2
Query: 1082 FKFPLSVSCIHFICSSVGGYVVIKVLKLKPLIHVEPEDRWRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTGKIQ*LVTFLPPALC*NFKDILI*SW*TCTVVLQWLVWRKYFDWRIWASLIPIVGGILLASFTELSFNMFGFCAALFGCLATSTKTILAESLL--HGYKFDRCKI 1630
FK+P+ ++ H S+ YV I LK+ P+ + ++ +I +S VFC+++V GN+SLR++PVSF Q I + TP T V +L+ RK W + +L+P+V G+++AS E SF++FGF + A + K++L LL G K + +
Sbjct: 38 FKYPIFLTMCHMTACSLLSYVAIAWLKMVPMQTIRSRVQFFKIAALSLVFCVSVVFGNISLRFLPVSFNQAIGATTP------------------------------FFTAVFAYLMTRKKEAWLTYFTLVPVVTGVVIASGGEPSFHLFGFLMCIAATAARALKSVLQGILLSSEGEKLNSMNL 192
BLAST of rna-TanjilR_13879 vs. DB:Swiss
Match: PT311_ARATH (Probable sugar phosphate/phosphate translocator At3g11320 OS=Arabidopsis thaliana OX=3702 GN=At3g11320 PE=2 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 2.091e-16 Identity = 56/185 (30.27%), Postives = 92/185 (49.73%), Query Frame = 2
Query: 1082 FKFPLSVSCIHFICSSVGGYVVIKVLKLKPLIHVEPEDRWRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTGKIQ*LVTFLPPALC*NFKDILI*SW*TCTVVLQWLVWRKYFDWRIWASLIPIVGGILLASFTELSFNMFGFCAALFGCLATSTKTILAESLL--HGYKFDRCKI 1630
FK+P+ ++ H S+ YV I +K+ P+ + ++ +I +S VFC+++V GN+SLR++PVSF Q I + TP T L+TF A W YF +L+P+V G+++AS +E SF++FGF + A + K++L LL G K + +
Sbjct: 38 FKYPIFLTMCHMTACSLLSYVAIAWMKMVPMQTIRSRVQFLKIAALSLVFCVSVVFGNISLRFLPVSFNQAIGATTPFFTAVFAYLITFKREA------------------------WLTYF------TLVPVVTGVVIASGSEPSFHLFGFIMCIAATAARALKSVLQGILLSSEGEKLNSMNL 192
BLAST of rna-TanjilR_13879 vs. DB:Swiss
Match: UUAT1_ARATH (UDP-URONIC ACID TRANSPORTER 1 OS=Arabidopsis thaliana OX=3702 GN=UUAT1 PE=1 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 4.065e-16 Identity = 55/185 (29.73%), Postives = 89/185 (48.11%), Query Frame = 2
Query: 1082 FKFPLSVSCIHFICSSVGGYVVIKVLKLKPLIHVEPEDRWRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTGKIQ*LVTFLPPALC*NFKDILI*SW*TCTVVLQWLVWRKYFDWRIWASLIPIVGGILLASFTELSFNMFGFCAALFGCLATSTKTILAESLL--HGYKFDRCKI 1630
FKFP+ ++ H ++ Y+ I LKL PL H++ ++ ++ +S VFC ++V GN+SLRY+PVSF Q + + TP T L+TF K W + +L+P+V G+++AS E F+ FGF + A + K++L LL G K + +
Sbjct: 39 FKFPIFLTMCHMSACAILSYISIVFLKLVPLQHLKSRSQFLKVATLSIVFCASVVGGNISLRYLPVSFNQAVGATTPFFTALFAYLMTF------------------------------KREAWVTYGALVPVVAGVVIASGGEPGFHWFGFIMCISATAARAFKSVLQGILLSSEGEKLNSMNL 193
BLAST of rna-TanjilR_13879 vs. DB:Swiss
Match: PT310_ARATH (Probable sugar phosphate/phosphate translocator At3g10290 OS=Arabidopsis thaliana OX=3702 GN=At3g10290 PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 8.221e-15 Identity = 52/173 (30.06%), Postives = 85/173 (49.13%), Query Frame = 2
Query: 1082 FKFPLSVSCIHFICSSVGGYVVIKVLKLKPLIHVEPEDRWRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTGKIQ*LVTFLPPALC*NFKDILI*SW*TCTVVLQWLVWRKYFDWRIWASLIPIVGGILLASFTELSFNMFGFCAALFGCLATSTKTILAESLL 1600
FKFP+ ++ H ++ YV I LKL PL +++ ++ ++ +S VFC ++V GN+SLRY+PVSF Q + + TP T ++TF K W + +L+P+V G+++AS E F+ FGF + A + K++L LL
Sbjct: 85 FKFPIFLTMCHMSACAILSYVSIVFLKLVPLQYLKSRSQFLKVATLSIVFCASVVGGNISLRYLPVSFNQAVGATTPFFTALFAYIMTF------------------------------KREAWVTYGALVPVVTGVVIASGGEPGFHWFGFIMCISATAARAFKSVLQGILL 227
BLAST of rna-TanjilR_13879 vs. DB:Swiss
Match: PT112_ARATH (Probable sugar phosphate/phosphate translocator At1g12500 OS=Arabidopsis thaliana OX=3702 GN=At1g12500 PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 4.280e-13 Identity = 46/152 (30.26%), Postives = 76/152 (50.00%), Query Frame = 2
Query: 1082 FKFPLSVSCIHFICSSVGGYVVIKVLKLKPLIHVEPEDRWRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTGKIQ*LVTFLPPALC*NFKDILI*SW*TCTVVLQWLVWRKYFDWRIWASLIPIVGGILLASFTELSFNMFGF 1537
F++P+ ++ H + + VI + + P H+ ++ +I +S +FC+++V GN SLRYIPVSF Q I + TP F T V +L+ K ++ +L+P+V GI+LAS +E SF++FGF
Sbjct: 86 FRYPIFLTMTHMLSCAAYSSAVINIAGIVPRQHILSRRQFLKILSLSAIFCLSVVCGNTSLRYIPVSFNQAIGATTP-----------FF-------------------TAVFSFLITCKTESTEVYLALLPVVSGIVLASNSEPSFHLFGF 207
BLAST of rna-TanjilR_13879 vs. DB:Swiss
Match: GPT1_ARATH (Glucose-6-phosphate/phosphate translocator 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=GPT1 PE=2 SV=1) HSP 1 Score: 59.3066 bits (142), Expect = 7.839e-8 Identity = 40/148 (27.03%), Postives = 63/148 (42.57%), Query Frame = 2
Query: 1193 DRWRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTGKIQ*LVTFLPPALC*NFKDILI*SW*TCTVVLQWLVWRKYFDWRIWASLIPIVGGILLASFTELSFNMFGFCAALFGCLATSTKTILAESLLHGYKFDRCKIYS 1636
D W+ +FP++ I V VS+ + VSF IKS PA +V++ + + F ++ SLIPI+GG L++ TEL+FNM GF A+ LA + I ++ + G Y+
Sbjct: 157 DFWKTLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPA------------------------------FSVLVSRFILGETFPTSVYLSLIPIIGGCALSALTELNFNMIGFMGAMISNLAFVFRNIFSKKGMKGKSVSGMNYYA 274
BLAST of rna-TanjilR_13879 vs. DB:Swiss
Match: S35E2_MOUSE (Solute carrier family 35 member E2A OS=Mus musculus OX=10090 GN=Slc35e2a PE=2 SV=1) HSP 1 Score: 58.9214 bits (141), Expect = 1.205e-7 Identity = 40/151 (26.49%), Postives = 69/151 (45.70%), Query Frame = 2
Query: 1190 EDRWRRIFPMSFVFCI---------NIVLGNVSLRYIPVSFMQTIKSFTPATTGKIQ*LVTFLPPALC*NFKDILI*SW*TCTVVLQWLVWRKYFDWRIWASLIPIVGGILLASFTELSFNMFGFCAALFGCLATSTKTILAESLLHGYKF 1615
+ + R +P +F+ + +VLG VSL+ + VSF +T+KS P TV++ ++ +Y + SLIP++GG+ L + TE+SFN+ GF AAL + + + ++ LL G K+
Sbjct: 131 QHKTRLSYPPNFIMTMLFVGLMRFATVVLGLVSLKNVAVSFAETVKSSAP------------------------------IFTVIMSRMILGEYTGLLVNLSLIPVMGGLALCTATEISFNILGFSAALSTNIMDCLQNVFSKKLLSGDKY 251
BLAST of rna-TanjilR_13879 vs. DB:Swiss
Match: S352B_HUMAN (Solute carrier family 35 member E2B OS=Homo sapiens OX=9606 GN=SLC35E2B PE=2 SV=1) HSP 1 Score: 58.5362 bits (140), Expect = 1.899e-7 Identity = 40/151 (26.49%), Postives = 69/151 (45.70%), Query Frame = 2
Query: 1190 EDRWRRIFPMSFVFCI---------NIVLGNVSLRYIPVSFMQTIKSFTPATTGKIQ*LVTFLPPALC*NFKDILI*SW*TCTVVLQWLVWRKYFDWRIWASLIPIVGGILLASFTELSFNMFGFCAALFGCLATSTKTILAESLLHGYKF 1615
+ + R +P +F+ + +VLG VSL+ + VSF +T+KS P TV++ ++ +Y + SLIP++GG+ L + TE+SFN+ GF AAL + + + ++ LL G K+
Sbjct: 131 QHKARLSYPPNFLMTMLFVGLMRFATVVLGLVSLKNVAVSFAETVKSSAP------------------------------IFTVIMSRMILGEYTGLLVNLSLIPVMGGLALCTATEISFNVLGFSAALSTNIMDCLQNVFSKKLLSGDKY 251 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_13879 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_13879_La_Tanjil_v1.0 ID=rna-TanjilR_13879_La_Tanjil_v1.0; Name=rna-TanjilR_13879; organism=Lupinus angustifolius; type=mRNA; length=2895bpback to top protein sequence of rna-TanjilR_13879_La_Tanjil_v1.0 >rna-TanjilR_13879_La_Tanjil_v1.0 ID=rna-TanjilR_13879_La_Tanjil_v1.0; Name=rna-TanjilR_13879_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=345bpback to top mRNA from alignment at Chr_LG09-CM007369.1:18010162..18013056+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_13879_La_Tanjil_v1.0 ID=rna-TanjilR_13879_La_Tanjil_v1.0; Name=rna-TanjilR_13879; organism=Lupinus angustifolius; type=mRNA; length=2895bp; location=Sequence derived from: Chr_LG09-CM007369.1:18010162..18013056+ (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG09-CM007369.1:18010162..18013056+ >rna-TanjilR_13879_La_Tanjil_v1.0 ID=rna-TanjilR_13879_La_Tanjil_v1.0; Name=rna-TanjilR_13879; organism=Lupinus angustifolius; type=CDS; length=1038bp; location=Sequence derived from: Chr_LG09-CM007369.1:18010162..18013056+ (Lupinus angustifoliusback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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