rna-TanjilR_13874
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_13874 vs. DB:Swiss
Match: P24D5_ARATH (Transmembrane emp24 domain-containing protein p24delta5 OS=Arabidopsis thaliana OX=3702 GN=At1g21900 PE=1 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 5.085e-25 Identity = 47/72 (65.28%), Postives = 56/72 (77.78%), Query Frame = 2 Query: 215 QVTSPYGNTLHYNGNAIHGQFAFTTTETGSYLACFWLDANGKHEEGTNLILDWKIGISAKDWDSVAKKEKIE 430
+VTSPYGN LH+ N HGQFAFTT E G+YLACFW+D++ L +DWK+GI+AKDWDSVAKKEKIE
Sbjct: 72 KVTSPYGNNLHHQENVTHGQFAFTTQEAGNYLACFWIDSSHHLANPITLGVDWKMGIAAKDWDSVAKKEKIE 143 HSP 2 Score: 32.7278 bits (73), Expect = 5.085e-25 Identity = 14/27 (51.85%), Postives = 22/27 (81.48%), Query Frame = 3 Query: 537 KGVELELRKLEASVTAIHESLFHLKDK 617
+GVEL+LR+LE V +I E+L ++KD+
Sbjct: 143 EGVELQLRRLEGLVLSIRENLNYIKDR 169 HSP 3 Score: 64.3142 bits (155), Expect = 1.262e-10 Identity = 28/48 (58.33%), Postives = 38/48 (79.17%), Query Frame = 3 Query: 1002 REAKMREVGEITNARVAWYGLVSLGVCILASALQVWHLKCFFQKKKLI 1145
REA+MREV E TN+RVAW+ ++SLGVC++ Q+ +LK +F KKKLI
Sbjct: 169 REAEMREVSETTNSRVAWFSIMSLGVCVVVVGSQILYLKRYFHKKKLI 216
BLAST of rna-TanjilR_13874 vs. DB:Swiss
Match: P24D3_ARATH (Transmembrane emp24 domain-containing protein p24delta3 OS=Arabidopsis thaliana OX=3702 GN=At1g09580 PE=1 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 1.007e-24 Identity = 43/72 (59.72%), Postives = 53/72 (73.61%), Query Frame = 2 Query: 215 QVTSPYGNTLHYNGNAIHGQFAFTTTETGSYLACFWLDANGKHEEGTNLILDWKIGISAKDWDSVAKKEKIE 430
+VTSPYGN LH N HGQFAFTT E+G+YLACFW D + ++ +DW+ GI+AKDW S+AKKEKIE
Sbjct: 73 KVTSPYGNNLHNMENVTHGQFAFTTQESGNYLACFWADEKSHGNKNVSINIDWRTGIAAKDWASIAKKEKIE 144 HSP 2 Score: 38.5058 bits (88), Expect = 1.007e-24 Identity = 15/27 (55.56%), Postives = 24/27 (88.89%), Query Frame = 3 Query: 537 KGVELELRKLEASVTAIHESLFHLKDK 617
+GVELE+RKLE +V AIHE++ +L+++
Sbjct: 144 EGVELEIRKLEGAVEAIHENILYLRNR 170 HSP 3 Score: 65.855 bits (159), Expect = 4.013e-11 Identity = 30/48 (62.50%), Postives = 37/48 (77.08%), Query Frame = 3 Query: 1002 REAKMREVGEITNARVAWYGLVSLGVCILASALQVWHLKCFFQKKKLI 1145
REA MR + E TN+RVAWY ++SLGVCI S QV +LK +F+KKKLI
Sbjct: 170 READMRTMSEKTNSRVAWYSIMSLGVCIAVSGFQVLYLKQYFEKKKLI 217
BLAST of rna-TanjilR_13874 vs. DB:Swiss
Match: P24D4_ARATH (Transmembrane emp24 domain-containing protein p24delta4 OS=Arabidopsis thaliana OX=3702 GN=CYB PE=1 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 2.084e-23 Identity = 44/80 (55.00%), Postives = 57/80 (71.25%), Query Frame = 2 Query: 203 SFFP----QVTSPYGNTLHYNGNAIHGQFAFTTTETGSYLACFWLDANGKHEEGTNLILDWKIGISAKDWDSVAKKEKIE 430
S FP +VT+PYG LH+ N +GQFAFTT E+G+YLACF DA + ++ +DWK GI+AKDWDS+A+KEKIE
Sbjct: 60 SIFPTVSVKVTAPYGTVLHHRENTTNGQFAFTTQESGTYLACFEADAKSHGNKDFSINIDWKTGIAAKDWDSIARKEKIE 139 HSP 2 Score: 36.965 bits (84), Expect = 2.084e-23 Identity = 15/27 (55.56%), Postives = 23/27 (85.19%), Query Frame = 3 Query: 537 KGVELELRKLEASVTAIHESLFHLKDK 617
+GVELE +KLE +V AIHE+L +L+++
Sbjct: 139 EGVELEFKKLEGAVEAIHENLIYLRNR 165 HSP 3 Score: 67.3958 bits (163), Expect = 1.012e-11 Identity = 30/48 (62.50%), Postives = 40/48 (83.33%), Query Frame = 3 Query: 1002 REAKMREVGEITNARVAWYGLVSLGVCILASALQVWHLKCFFQKKKLI 1145
REA+MR V E TN+RVAWY ++SLG+CI+ S LQ+ +LK +F+KKKLI
Sbjct: 165 REAEMRIVSEKTNSRVAWYSIMSLGICIVVSGLQILYLKQYFEKKKLI 212
BLAST of rna-TanjilR_13874 vs. DB:Swiss
Match: P24D6_ARATH (Transmembrane emp24 domain-containing protein p24delta6 OS=Arabidopsis thaliana OX=3702 GN=At3g10780 PE=1 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 3.068e-18 Identity = 41/75 (54.67%), Postives = 52/75 (69.33%), Query Frame = 2 Query: 215 QVTSPYGNTLHYNGNAIHGQFAFTTTETGSYLACFWLDANGKHEEGTNLI---LDWKIGISAKDWDSVAKKEKIE 430
+VTSPYG L+ N HGQ AFTT+E+G++LAC + + H + + LDWK+GI AKDWDSVAKKEKIE
Sbjct: 70 RVTSPYGKELYKIANVTHGQAAFTTSESGTFLACLAMHHDQSHHSVNSSVIVSLDWKMGIRAKDWDSVAKKEKIE 144 HSP 2 Score: 55.8398 bits (133), Expect = 9.132e-8 Identity = 29/48 (60.42%), Postives = 34/48 (70.83%), Query Frame = 3 Query: 1002 REAKMREVGEITNARVAWYGLVSLGVCILASALQVWHLKCFFQKKKLI 1145
REA MRE+ E TN RV GL+SLGV I+ S QV +LK +F KKKLI
Sbjct: 170 REAYMREINEKTNTRVNQLGLMSLGVAIVVSISQVLYLKRYFLKKKLI 217
BLAST of rna-TanjilR_13874 vs. DB:Swiss
Match: P24D9_ARATH (Transmembrane emp24 domain-containing protein p24delta9 OS=Arabidopsis thaliana OX=3702 GN=At1g26690 PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 4.697e-13 Identity = 33/73 (45.21%), Postives = 47/73 (64.38%), Query Frame = 2 Query: 215 QVTSPYGNTLHYNGNAIHGQFAFTTTETGSYLACFWLDANGKHEEGTNLILDWKIGISAKDWDSVAKKEKIEV 433
+VTS YGNT H+ + GQFAFT E+G Y+AC + + K E ++ DW+ G+ +K W SVAKK ++EV
Sbjct: 71 RVTSSYGNTYHHAEDVESGQFAFTAVESGDYMAC-YTAVDHKPEVTLSIDFDWRTGVQSKSWSSVAKKSQVEV 142 HSP 2 Score: 25.7942 bits (55), Expect = 4.697e-13 Identity = 8/25 (32.00%), Postives = 20/25 (80.00%), Query Frame = 3 Query: 543 VELELRKLEASVTAIHESLFHLKDK 617
+E ++++L +V +IHE +F+L+++
Sbjct: 143 MEFDVKRLIETVNSIHEEMFYLRER 167
BLAST of rna-TanjilR_13874 vs. DB:Swiss
Match: P24D7_ARATH (Transmembrane emp24 domain-containing protein p24delta7 OS=Arabidopsis thaliana OX=3702 GN=At1g14010 PE=2 SV=1) HSP 1 Score: 63.929 bits (154), Expect = 4.739e-12 Identity = 32/74 (43.24%), Postives = 44/74 (59.46%), Query Frame = 2 Query: 215 QVTSPYGNTLHYNGNAIHGQFAFTTTETGSYLACFWLDANGKHEEGTNLIL--DWKIGISAKDWDSVAKKEKIE 430
+VTSP G H + GQF+F ETG Y++CF + H+ T LI+ DW+ GI KDW +VAKK ++E
Sbjct: 69 RVTSPQGTAYHESDGVESGQFSFVAVETGDYISCF---SAVDHKPETTLIIDFDWRTGIHTKDWSNVAKKSQVE 139 HSP 2 Score: 28.8758 bits (63), Expect = 4.739e-12 Identity = 10/27 (37.04%), Postives = 20/27 (74.07%), Query Frame = 3 Query: 537 KGVELELRKLEASVTAIHESLFHLKDK 617
+ +E E++KL +V IH+ +F+L+D+
Sbjct: 139 ETMEFEVKKLFETVNGIHDEMFYLRDR 165 HSP 3 Score: 60.077 bits (144), Expect = 3.048e-9 Identity = 26/48 (54.17%), Postives = 33/48 (68.75%), Query Frame = 3 Query: 1002 REAKMREVGEITNARVAWYGLVSLGVCILASALQVWHLKCFFQKKKLI 1145
RE +M + TN+++AW VSL VC+ + LQ WHLK FFQKKKLI
Sbjct: 165 REEEMHNLNIATNSKMAWLSFVSLAVCLSVAGLQFWHLKTFFQKKKLI 212
BLAST of rna-TanjilR_13874 vs. DB:Swiss
Match: P24DA_ARATH (Transmembrane emp24 domain-containing protein p24delta10 OS=Arabidopsis thaliana OX=3702 GN=At1g69460 PE=1 SV=1) HSP 1 Score: 60.8474 bits (146), Expect = 1.699e-10 Identity = 30/73 (41.10%), Postives = 43/73 (58.90%), Query Frame = 2 Query: 215 QVTSPYGNTLHYNGNAIHGQFAFTTTETGSYLACFWLDANGKHEEGTNLILDWKIGISAKDWDSVAKKEKIEV 433
+VTS GN H+ GQFAF+ E G Y+ACF + K E ++ +WK G+ +K W +VAKK ++EV
Sbjct: 71 KVTSNSGNNYHHAEQVDSGQFAFSAVEAGDYMACF-TAVDHKPEVSLSIDFEWKTGVQSKSWANVAKKSQVEV 142 HSP 2 Score: 26.9498 bits (58), Expect = 1.699e-10 Identity = 9/25 (36.00%), Postives = 19/25 (76.00%), Query Frame = 3 Query: 543 VELELRKLEASVTAIHESLFHLKDK 617
+E E++ L +V +IHE +++L+D+
Sbjct: 143 MEFEVKSLLDTVNSIHEEMYYLRDR 167
BLAST of rna-TanjilR_13874 vs. DB:Swiss
Match: P24D8_ARATH (Transmembrane emp24 domain-containing protein p24delta8 OS=Arabidopsis thaliana OX=3702 GN=At2g03290 PE=1 SV=1) HSP 1 Score: 58.151 bits (139), Expect = 1.674e-8 Identity = 25/48 (52.08%), Postives = 34/48 (70.83%), Query Frame = 3 Query: 1002 REAKMREVGEITNARVAWYGLVSLGVCILASALQVWHLKCFFQKKKLI 1145
RE +M+E+ TN+++AW SL VC+ + LQ WHLK FF+KKKLI
Sbjct: 166 REEEMQELNRSTNSKMAWLSFGSLVVCLSVAGLQFWHLKTFFEKKKLI 213 HSP 2 Score: 56.225 bits (134), Expect = 6.372e-8 Identity = 28/73 (38.36%), Postives = 41/73 (56.16%), Query Frame = 2 Query: 215 QVTSPYGNTLHYNGNAIHGQFAFTTTETGSYLACFWLDANGKHEEGTNLILDWKIGISAKDWDSVAKKEKIEV 433
+V P G LH GQF+FT E GSY+AC + K E + DWK G+ +K+W +VAKK ++++
Sbjct: 70 KVMPPQGKNLHEADKVEAGQFSFTAYENGSYVACI-TAIDYKPETTLTIDFDWKTGVHSKEWTNVAKKSQVDM 141
BLAST of rna-TanjilR_13874 vs. DB:Swiss
Match: P24DB_ARATH (Transmembrane emp24 domain-containing protein p24delta11 OS=Arabidopsis thaliana OX=3702 GN=At3g29070 PE=2 SV=1) HSP 1 Score: 56.225 bits (134), Expect = 8.566e-8 Identity = 29/75 (38.67%), Postives = 41/75 (54.67%), Query Frame = 2 Query: 206 FFPQVTSPYGNTLHYNGNAIHGQFAFTTTETGSYLACFWLDANGKHEEGTNLI-LDWKIGISAKDWDSVAKKEKI 427
F V+SP G + H+ N G+F FT ETG Y+ CF A G + +WK G+ AKDW ++AK+ +I
Sbjct: 79 LFVTVSSPKGKSHHHAENVESGKFVFTAEETGDYMTCFV--APGYRPTAKFAVDFEWKSGVEAKDWTTIAKRGQI 151 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_13874 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 9 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_13874_La_Tanjil_v1.0 ID=rna-TanjilR_13874_La_Tanjil_v1.0; Name=rna-TanjilR_13874; organism=Lupinus angustifolius; type=mRNA; length=1148bpback to top protein sequence of rna-TanjilR_13874_La_Tanjil_v1.0 >rna-TanjilR_13874_La_Tanjil_v1.0 ID=rna-TanjilR_13874_La_Tanjil_v1.0; Name=rna-TanjilR_13874_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=155bpback to top mRNA from alignment at Chr_LG09-CM007369.1:18054473..18055620- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_13874_La_Tanjil_v1.0 ID=rna-TanjilR_13874_La_Tanjil_v1.0; Name=rna-TanjilR_13874; organism=Lupinus angustifolius; type=mRNA; length=1148bp; location=Sequence derived from: Chr_LG09-CM007369.1:18054473..18055620- (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG09-CM007369.1:18054473..18055620- >rna-TanjilR_13874_La_Tanjil_v1.0 ID=rna-TanjilR_13874_La_Tanjil_v1.0; Name=rna-TanjilR_13874; organism=Lupinus angustifolius; type=CDS; length=468bp; location=Sequence derived from: Chr_LG09-CM007369.1:18054473..18055620- (Lupinus angustifoliusback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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