rna-TanjilR_24181
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_24181 vs. DB:Swiss
Match: TLPH_ARATH (Thaumatin-like protein OS=Arabidopsis thaliana OX=3702 GN=At1g18250 PE=2 SV=2) HSP 1 Score: 233.417 bits (594), Expect = 2.936e-73 Identity = 119/223 (53.36%), Postives = 144/223 (64.57%), Query Frame = 3 Query: 663 SARVFTIVNYCKETLWPAAIPGDNFN---GGGFVLKPGQSSVFSAPVGWSGRIWARTGCNFDKNGIGNCQTGSCGTSLKC-GSSGKTPASLAEFTLA-ELDFYDVSLVDGFNVPISIMPLNGKGNCTNAGCDSDLRTTCPKELSVKT-NGK-TVGCRSACDVFNTDEYCCRGNFGNPSTCRPTFYSKKFKEACPTSYSYAYDDPTSICTCQGTDYVIAFCASR 1310 SA N CK +WP P N GGGF L ++ P WSGR W R GC FD++G G+C TG CG SL C G+ G+ PA+LAE TL ELDFYDVSLVDG+N+ +SIMP+ G G C+ AGC SDL CP L V++ NGK V C+SAC FN+ +YCC G FGNP +C+PT YSK FK ACP +YSYAYDDPTSI TC +Y++ FC Sbjct: 19 SASTVIFYNKCKHPVWPGIQPSAGQNLLAGGGFKLPANKAHSLQLPPLWSGRFWGRHGCTFDRSGRGHCATGDCGGSLSCNGAGGEPPATLAEITLGPELDFYDVSLVDGYNLAMSIMPVKGSGQCSYAGCVSDLNQMCPVGLQVRSRNGKRVVACKSACSAFNSPQYCCTGLFGNPQSCKPTAYSKIFKVACPKAYSYAYDDPTSIATCSKANYIVTFCPHH 241
BLAST of rna-TanjilR_24181 vs. DB:Swiss
Match: PR5_ARATH (Pathogenesis-related protein 5 OS=Arabidopsis thaliana OX=3702 GN=At1g75040 PE=1 SV=1) HSP 1 Score: 221.861 bits (564), Expect = 7.209e-69 Identity = 117/217 (53.92%), Postives = 133/217 (61.29%), Query Frame = 3 Query: 666 ARVFTIVNYCKETLWPAAIPGD--NFNGGGFVLKPGQSSVFSAPVGWSGRIWARTGCNFDKNGIGNCQTGSCGTSLKCGSSGKTPASLAEFTLAE---LDFYDVSLVDGFNVPISIMPLNGKGNCTNAGCDSDLRTTCPKELSVKTNGKTVGCRSACDVFNTDEYCCRGNFGNPSTCRPTFYSKKFKEACPTSYSYAYDDPTSICTCQGTDYVIAFC 1301 A FT+ N C T+W + G GGF L PG S +AP GWSGR WARTGCNFD +G G C TG CG L+C G P +LAEFTL DFYDVSLVDG+NV + I P G G+C AGC SDL CP L V V C+SAC+ FNTD+YCCRG P TC PT YS+ FK ACP +YSYAYDD TS TC G +Y I FC Sbjct: 23 ATDFTLRNNCPTTVWAGTLAGQGPKLGDGGFELTPGASRQLTAPAGWSGRFWARTGCNFDASGNGRCVTGDCG-GLRCNGGGVPPVTLAEFTLVGDGGKDFYDVSLVDGYNVKLGIRPSGGSGDCKYAGCVSDLNAACPDMLKVMDQNNVVACKSACERFNTDQYCCRGANDKPETCPPTDYSRIFKNACPDAYSYAYDDETSTFTCTGANYEITFC 238
BLAST of rna-TanjilR_24181 vs. DB:Swiss
Match: TLPH_ORYSJ (Thaumatin-like protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0706600 PE=2 SV=1) HSP 1 Score: 197.208 bits (500), Expect = 4.021e-59 Identity = 99/218 (45.41%), Postives = 129/218 (59.17%), Query Frame = 3 Query: 675 FTIVNYCKETLWPAAIPGDNF---NGGGFVLKPGQSSVFSAPVGWSGRIWARTGCNFDKNGIGNCQTGSCGTSLKC-GSSGKTPASLAEFTL----AELDFYDVSLVDGFNVPISIMPLNGKGNCTNAGCDSDLRTTCPKELSVK-TNGKTVGCRSACDVFNTDEYCCRGNFGNPSTCRPTFYSKKFKEACPTSYSYAYDDPTSICTCQGTDYVIAFC 1301 +VN C E++WP + GGF L G+ + P GWSGR+W R GC+FD G G+C TG CG L+C G++G TPA++ E TL + + FYDVSLVDGFN P+S+ + G C A C +D+ CP L V+ G+ GCRSAC D YCC G++ +PS CRPT +S FK CP +YSYAYDD TS+ C Y+I FC Sbjct: 31 LIMVNNCGESVWPGLLGTAGHPTPQSGGFHLGAGEEAALEVPAGWSGRVWPRRGCSFDSRGRGSCATGDCGGVLRCNGAAGATPATVVEMTLGTSASAMHFYDVSLVDGFNAPVSMAAVGGGVGCGTAACGADVNVCCPSALEVRDREGRVAGCRSACRAMGGDRYCCTGDYASPSACRPTIFSHLFKAICPRAYSYAYDDATSLNRCHAKRYLITFC 248
BLAST of rna-TanjilR_24181 vs. DB:Swiss
Match: THLP1_ARATH (Thaumatin-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=TLP1 PE=2 SV=1) HSP 1 Score: 195.282 bits (495), Expect = 3.017e-58 Identity = 108/226 (47.79%), Postives = 136/226 (60.18%), Query Frame = 3 Query: 675 FTIVNYCKETLWPAAIPGD---NFNGGGFVLKPGQSSVFSAPVGWSGRIWARTGCNFDKN-GIGNCQTGSCGTS-LKC-GSSGKTPASLAEFTLA--------ELDFYDVSLVDGFNVPISIMPLNG-KGNCTNAGCDSDLRTTCPKELSVKTNGKTVGCRSACDVFNTDEYCCRGNFGNPSTCRPTFYSKKFKEACPTSYSYAYDDPTSICTCQGTDYVIAFCAS 1307 TIVN C T+WP + + GF L PG S F AP WSGR WARTGCNF+ + G G C TG CG++ ++C G+ K PA+LAEFT+ + DFYDVSLVDG+NVP+ + G +G C GC +DL CP EL G C+SAC+ F + EYCC G + +P+ C+P+ YS+ FK ACP SYSYA+DD TS TC DY I FC S Sbjct: 35 ITIVNRCSFTVWPGILSNSGSGDIGTTGFELVPGGSRSFQAPASWSGRFWARTGCNFNSDTGQGTCLTGDCGSNQVECNGAGAKPPATLAEFTIGSGPADPARKQDFYDVSLVDGYNVPMLVEASGGSEGTCLTTGCVTDLNQKCPTELRF---GSGSACKSACEAFGSPEYCCSGAYASPTECKPSMYSEIFKSACPRSYSYAFDDATSTFTCTDADYTITFCPS 257
BLAST of rna-TanjilR_24181 vs. DB:Swiss
Match: PRR3_JUNAS (Pathogenesis-related protein OS=Juniperus ashei OX=13101 PE=1 SV=1) HSP 1 Score: 184.882 bits (468), Expect = 9.619e-55 Identity = 101/210 (48.10%), Postives = 124/210 (59.05%), Query Frame = 3 Query: 675 FTIVNYCKETLWPAAIPGDNFNGGGFVLKPGQSSVFSAPVG-WSGRIWARTGCNFDKNGIGNCQTGSCGTSLKCGSSGKTPASLAEFTLAELDFYDVSLVDGFNVPISIMPLNGKGNCTNAGCDSDLRTTCPKELSVKTNGKTVGCRSACDVFNTDEYCCRGNFGNPSTCRPTFYSKKFKEACPTSYSYAYDDPTSICTCQGTDYVIAFC 1301 F I N C T+W A +PG GG L GQ+ + G S R W RTGC FD +G G+CQTG CG L C SG PA+LAE+T ++ D+YDVSLVDGFN+P++I P N + CT C +D+ CP EL V GC SAC+VF TD+YCCR + + C T YSK FK CP +YSYA DD + GTDY I FC Sbjct: 29 FDIKNQCGYTVWAAGLPG-----GGKRLDQGQTWTVNLAAGTASARFWGRTGCTFDASGKGSCQTGDCGGQLSCTVSGAVPATLAEYTQSDQDYYDVSLVDGFNIPLAINPTNAQ--CTAPACKADINAVCPSELKVDG-----GCNSACNVFKTDQYCCRNAYVD--NCPATNYSKIFKNQCPQAYSYAKDDTATFACASGTDYSIVFC 224
BLAST of rna-TanjilR_24181 vs. DB:Swiss
Match: OLP1_SOLLC (Osmotin-like protein OS=Solanum lycopersicum OX=4081 PE=1 SV=1) HSP 1 Score: 185.652 bits (470), Expect = 9.981e-55 Identity = 96/223 (43.05%), Postives = 135/223 (60.54%), Query Frame = 3 Query: 672 VFTIVNYCKETLWPAAIPGDN---FNGGGFVLKPGQSSVFSAP-VGWSGRIWARTGCNFDKNGIGNCQTGSCGTSLKC-GSSGKTPASLAEFTL----AELDFYDVSLVDGFNVPISIMPLNGKGNCTNAGCDSDLRTTCPKELSVKTNG---KTVGCRSACDVFNTDEYCCRGNFGNPSTCRPTFYSKKFKEACPTSYSYAYDDPTSICTCQG-TDYVIAFC 1301 + T+VN C T+WPA P GGF L F AP WSGRIWARTGCN+ ++G C TG CG ++C G G PA+LA+F L A+ Y VSLVDGFN+P+++ P GKG C GC ++L +CP L +++G VGC+SAC+ F +DE+CCR ++ +P TC+P+ YS+ FK ACP +++YA+D P+ + C + + FC Sbjct: 30 ILTLVNNCPYTIWPAIQPNAGHPVLERGGFTLHSLTHRSFPAPNAHWSGRIWARTGCNY-QHGKFYCATGDCGGRIECDGLGGAAPATLAQFVLHHGHADFSTYGVSLVDGFNIPLTVTPHEGKGVCPVVGCRANLLESCPAVLQFRSHGGHGPVVGCKSACEAFKSDEFCCRNHYNSPQTCKPSSYSQFFKHACPATFTYAHDSPSLMHECSSPRELKVIFC 251
BLAST of rna-TanjilR_24181 vs. DB:Swiss
Match: ZEAM_MAIZE (Zeamatin OS=Zea mays OX=4577 GN=Zlp PE=1 SV=2) HSP 1 Score: 178.718 bits (452), Expect = 2.050e-52 Identity = 103/218 (47.25%), Postives = 132/218 (60.55%), Query Frame = 3 Query: 663 SARVFTIVNYCKETLWPAAIPGDNFNGGGFVLKPGQSSVFSAPVGW-SGRIWARTGCNFDKNGIGNCQTGSCGTSLKCGSSGKTPASLAEFTLAE---LDFYDVSLVDGFNVPISIMPLNGKGNCTNAGCDSDLRTTCPKELSVKTNGKTVGCRSACDVFNTDEYCCRGNFGNPSTCRPTFYSKKFKEACPTSYSYAYDDPTSICTC-QGTDYVIAFC 1301 A VFT+VN C T+W A++P GGG L G+S +AP G + RIWARTGC FD +G G+C+TG CG L+C G+ P +LAE+ L + LDF+D+SL+DGFNVP+S +P G G C D+ CP EL + +G C +AC VF DEYCC G+ N C PT YS+ FK CP +YSY DD TS TC GT+Y + FC Sbjct: 20 EAAVFTVVNQCPFTVWAASVP----VGGGRQLNRGESWRITAPAGTTAARIWARTGCKFDASGRGSCRTGDCGGVLQCTGYGRAPNTLAEYALKQFNNLDFFDISLIDGFNVPMSFLPDGGSGCSRGPRCAVDVNARCPAEL--RQDGV---CNNACPVFKKDEYCCVGSAAN--DCHPTNYSRYFKGQCPDAYSYPKDDATSTFTCPAGTNYKVVFC 226
BLAST of rna-TanjilR_24181 vs. DB:Swiss
Match: TLP1_PYRPY (Thaumatin-like protein 1 OS=Pyrus pyrifolia OX=3767 GN=TL1 PE=1 SV=1) HSP 1 Score: 178.718 bits (452), Expect = 4.081e-52 Identity = 101/219 (46.12%), Postives = 129/219 (58.90%), Query Frame = 3 Query: 675 FTIVNYCKETLWPAAIPGD---NFNGGGFVLKPGQSSVFSAPVGWSGRIWARTGCNFDKNGIGNCQTGSCGT-SLKCGSSGKTP-ASLAEFTLAE---LDFYDVSLVDGFNVPISIMPLNGKGNCTNAGCDSDLRTTCPKELSVK-TNGKTVGCRSACDVFNTDEYCCRGNFGNPSTCRPTFYSKKFKEACPTSYSYAYDDPTSICTC-QGTDYVIAFC 1301 FT N C T+WP + G GF L G S+ + WSGR W R+ C+ D +G C TG CG+ + C +G +P ASL E TLA DFYDVSLVDGFN+PI + P G G+C + C +++ T CP ELS K ++G +GC+SAC N +YCC G +G P TC PT +SK FK CP +YSYAYDD +S TC G +Y I FC Sbjct: 25 FTFTNKCPNTVWPGTLTGGGGPQLLSTGFELASGASTSLTVQAPWSGRFWGRSHCSIDSSGKFKCSTGDCGSGQISCNGAGASPPASLVELTLATNGGQDFYDVSLVDGFNLPIKLAPRGGSGDCNSTSCAANINTVCPAELSDKGSDGSVIGCKSACLALNQPQYCCTGAYGTPDTCPPTDFSKVFKNQCPQAYSYAYDDKSSTFTCFGGPNYEITFC 243
BLAST of rna-TanjilR_24181 vs. DB:Swiss
Match: IAAT_MAIZE (Alpha-amylase/trypsin inhibitor OS=Zea mays OX=4577 PE=1 SV=1) HSP 1 Score: 173.326 bits (438), Expect = 1.267e-50 Identity = 100/215 (46.51%), Postives = 130/215 (60.47%), Query Frame = 3 Query: 672 VFTIVNYCKETLWPAAIPGDNFNGGGFVLKPGQSSVFSAPVGW-SGRIWARTGCNFDKNGIGNCQTGSCGTSLKCGSSGKTPASLAEFTLAE---LDFYDVSLVDGFNVPISIMPLNGKGNCTNAGCDSDLRTTCPKELSVKTNGKTVGCRSACDVFNTDEYCCRGNFGNPSTCRPTFYSKKFKEACPTSYSYAYDDPTSICTC-QGTDYVIAFC 1301 VFT+VN C T+W A++P GGG L G+S +AP G + RIWARTGC FD +G G+C+TG CG ++C G+ P +LAE+ L + LDF+D+S++DGFNVP S +P G G C D+ CP EL + +G C +AC VF DEYCC G+ N C PT YS+ FK CP +YSY DD TS TC GT+Y + FC Sbjct: 2 VFTVVNQCPFTVWAASVP----VGGGRQLNRGESWRITAPAGTTAARIWARTGCQFDASGRGSCRTGDCGGVVQCTGYGRAPNTLAEYALKQFNNLDFFDISILDGFNVPYSFLPDGGSGCSRGPRCAVDVNARCPAEL--RQDGV---CNNACPVFKKDEYCCVGSAAN--NCHPTNYSRYFKGQCPDAYSYPKDDATSTFTCPAGTNYKVVFC 205
BLAST of rna-TanjilR_24181 vs. DB:Swiss
Match: P21_SOYBN (Protein P21 OS=Glycine max OX=3847 PE=1 SV=1) HSP 1 Score: 172.94 bits (437), Expect = 1.525e-50 Identity = 104/214 (48.60%), Postives = 125/214 (58.41%), Query Frame = 3 Query: 675 FTIVNYCKETLWPAAIPGDNFNGGGFVLKPGQSSVFSAPVGWSG-RIWARTGCNFDKNGIGNCQTGSCGTSLKCGSSGKTPASLAEFTL---AELDFYDVSLVDGFNVPISIMPLNGKGNCTNAGCDSDLRTTCPKELSVKTNGKTVGCRSACDVFNTDEYCCRGNFGNPSTCRPTFYSKKFKEACPTSYSYAYDDPTSICTCQ-GTDYVIAFC 1301 F I N C T+W A++P GGG L PGQS P G G R+WARTGCNFD +G G CQTG CG L C + G P +LAE+ L LDF+D+SLVDGFNVP+ P + G C +D+ CP EL KT G GC + C VF TD+YCC N +C PT YS+ FK+ CP +YSY DDP S TC GTDY + FC Sbjct: 3 FEITNRCTYTVWAASVP----VGGGVQLNPGQSWSVDVPAGTKGARVWARTGCNFDGSGRGGCQTGDCGGVLDCKAYGAPPNTLAEYGLNGFNNLDFFDISLVDGFNVPMDFSPTS-NGCTRGISCTADINGQCPSEL--KTQG---GCNNPCTVFKTDQYCC-----NSGSCGPTDYSRFFKQRCPDAYSYPKDDPPSTFTCNGGTDYRVVFC 201 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_24181 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_24181_La_Tanjil_v1.0 ID=rna-TanjilR_24181_La_Tanjil_v1.0; Name=rna-TanjilR_24181; organism=Lupinus angustifolius; type=mRNA; length=1322bpback to top protein sequence of rna-TanjilR_24181_La_Tanjil_v1.0 >rna-TanjilR_24181_La_Tanjil_v1.0 ID=rna-TanjilR_24181_La_Tanjil_v1.0; Name=rna-TanjilR_24181_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=239bpback to top mRNA from alignment at Chr_LG09-CM007369.1:18243774..18245095+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_24181_La_Tanjil_v1.0 ID=rna-TanjilR_24181_La_Tanjil_v1.0; Name=rna-TanjilR_24181; organism=Lupinus angustifolius; type=mRNA; length=1322bp; location=Sequence derived from: Chr_LG09-CM007369.1:18243774..18245095+ (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG09-CM007369.1:18243774..18245095+ >rna-TanjilR_24181_La_Tanjil_v1.0 ID=rna-TanjilR_24181_La_Tanjil_v1.0; Name=rna-TanjilR_24181; organism=Lupinus angustifolius; type=CDS; length=720bp; location=Sequence derived from: Chr_LG09-CM007369.1:18243774..18245095+ (Lupinus angustifoliusback to top |