rna-TanjilR_01640
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_01640 vs. DB:Swiss
Match: RAP24_ARATH (Ethylene-responsive transcription factor RAP2-4 OS=Arabidopsis thaliana OX=3702 GN=RAP2-4 PE=1 SV=1) HSP 1 Score: 220.705 bits (561), Expect = 1.151e-68 Identity = 174/347 (50.14%), Postives = 216/347 (62.25%), Query Frame = 1 Query: 1 MAAKMNFFNNSTQLDSDPFRVELMEVLSPFVKXXXXXXXXXXXXXXXXXXXXXXF--PTQPNFYTEGCPTMMTHLFDTGLSNSYNFIGFEQPSSVFGLNNLTPYQFNQIQAXXXXXX--XXXXXXXXXLSFLSPKPVPMKQVGL-----------PPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTXXXXXXXXXXXXXXXRGDFARLNFPNLKHQGSCVGGAFGEYKPLHSSVYAKLDAICDDLXXXXXXXXXXXXXXXXXXXXXXQPQLQNNNNCKEETLL---STVVTDCEGSD-GSSPLSDLTFDDFTE-PQWETPSENFNLMKFPSYEIDWDSL 981 MAA MN + S ELM+ L PF+K+ S + + S + S+ + +F P P +Y + T +T F G +Q S+ GLNNL+ Q +QIQ+ HH + +N++ + LSPKP+ MKQ G+ P KPTKLYRGVRQRHWGKWVAEIRLP+NRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNL+H GS +GG FGEYKPLHSSV AKL+AIC + + + + K K SK K+ P L +E ++ S VT+ E S GSSPLSDLTF D E PQW +E F+L K+PSYEIDWDS+ Sbjct: 1 MAAAMNLYTCSRSFQDS--GGELMDALVPFIKSVSDSPSSSSAASASAFLHPSAFSLPPLPGYYPDS--TFLTQPFSYGSD-------LQQTGSLIGLNNLSSSQIHQIQSQIHHPLPPTHHNNNNSFSNLLSPKPLLMKQSGVAGSCFAYGSGVPSKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHNGSHIGGDFGEYKPLHSSVDAKLEAICKSM-AETQKQDKSTKSSKKREKKVSSPDLSEKVKAEENSVSIGGSPPVTEFEESTAGSSPLSDLTFADPEEPPQW---NETFSLEKYPSYEIDWDSI 332
BLAST of rna-TanjilR_01640 vs. DB:Swiss
Match: ERF60_ARATH (Ethylene-responsive transcription factor ERF060 OS=Arabidopsis thaliana OX=3702 GN=ERF060 PE=2 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 1.787e-46 Identity = 137/330 (41.52%), Postives = 174/330 (52.73%), Query Frame = 1 Query: 7 AKMNFFNNSTQLDSDPFRVELMEVLSPFVKXXXXXXXXXXXXXXXXXXXXXXFPTQPNFYTEGCPTMMTHLFDTGLSNSYNFIGFEQPSSVFGLNNLTPYQFNQIQAXXXXXXXXXXXXXXXLSFLSPKPVPMKQVGLPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTXXXXXXXXXXXXXXXRGDFARLNFPNLKHQGSCVGGAFGEYKPLHSSVYAKLDAICDDLXXXXXXXXXXXXXXXXXXXXXXQPQ----LQNNNNCKEETLLSTVVTDCEGSDGSSPLSDL-TFDDFTEPQWETPSENFNLMKFPSYEIDWDSL 981 A ++ FN++T DPF+ ELM+ L P+ + PT +F GF Q +S+ GLN LTPYQ +QIQ + + I N L+PKPVPMK + KLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAA+AYD AAYKLRG+FARLNFP +H+ GG + PLHSSV AKL IC L+K + + K E Q L+++ N +D + SSP S + TF DF++ ++ +F L KFPS EIDWD++ Sbjct: 2 AAIDMFNSNT----DPFQEELMKALQPYTTNTDS----------------------------SSPTYSNTVF-----------GFNQTTSL-GLNQLTPYQIHQIQNQLNQRRNIISPN------LAPKPVPMKNM----TAQKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAAMAYDLAAYKLRGEFARLNFPQFRHEDGYYGGG-SCFNPLHSSVDAKLQEICQSLRKTEDIDLPCSETELFPPKTEYQESEYGFLRSDENS---------FSDESHVESSSPESGITTFLDFSDSGFDEIG-SFGLEKFPSVEIDWDAI 266
BLAST of rna-TanjilR_01640 vs. DB:Swiss
Match: RA213_ARATH (Ethylene-responsive transcription factor RAP2-13 OS=Arabidopsis thaliana OX=3702 GN=RAP2-13 PE=1 SV=1) HSP 1 Score: 160.614 bits (405), Expect = 3.686e-46 Identity = 117/219 (53.42%), Postives = 131/219 (59.82%), Query Frame = 1 Query: 382 LSPKPVPMKQVGL-PPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTXXXXXXXXXXXXXXXRGDFARLNFPNLKHQGSCVGGAFGEYKPLHSSVYAKLDAICDDLXXXXXXXXXXXXXXXXXXXXXXQPQLQNNNNCKEETLLSTVVTDCEGSDGSS------------------PLSDLTFDDFTEPQWETPSENFNLMKFPSYEIDWDSL 981 LSPKPV MKQ G KPTKLYRGVRQRHWGKWVAEIRLP+NRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFP+L+H EY+PL SSV AKL+AIC +L E Q Q+++ STV D SS PLS+LTF D TE + + P L K+PSYEIDWDS+ Sbjct: 62 LSPKPVSMKQTGTSAAKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPDLRHN--------DEYQPLQSSVDAKLEAICQNL------------------AETTQKQVRSTKKSSSRKRSSTVAVKLPEEDYSSAGSSPLLTESYGSGGSSSPLSELTFGD-TEEEIQPPWNENALEKYPSYEIDWDSI 253
BLAST of rna-TanjilR_01640 vs. DB:Swiss
Match: ERF56_ARATH (Ethylene-responsive transcription factor ERF056 OS=Arabidopsis thaliana OX=3702 GN=ERF056 PE=2 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 1.038e-39 Identity = 110/250 (44.00%), Postives = 142/250 (56.80%), Query Frame = 1 Query: 280 FGLNNLTPYQFNQIQAXXXXXXXXXXXXXXXLSFLSPKPVPMKQVGLPPKPTK-LYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTXXXXXXXXXXXXXXXRGDFARLNFPNLKHQGSCVGGAFGEYKPLHSSVYAKLDAICDDLXXXXXXXXXXXXXXXXXXXXXXQ-------------PQLQN--NNNCKEETLLSTVVTDCEGSDGSSPLSDLTFDDFTEPQWETPSENFNLMKFPSYEIDWDSL 981 GLN LTPYQ +QIQ + + +T+S LSP + MK + TK LYRGVRQRHWGKWVAEIRLPKNRTRLWLGTF+TAE+AALAYD+AA++LRGD A+LNFPNL H+ + PL SSV KL AIC L+K + + + S P+ ++ N E+ S + + S SD TF DF++ ++E +F L KFPS EIDWD++ Sbjct: 23 LGLNQLTPYQIHQIQ-------NQLNHRRSTISNLSPNRIRMKNLTPSTSKTKNLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFETAEKAALAYDQAAFQLRGDIAKLNFPNLIHE---------DMNPLPSSVDTKLQAICKSLRKTEEICSVSDQTKEYSVYSVSDKTELFLPKAELFLPKREHLETNELSNESPRSDETSLLDESQAEYSSSDKTFLDFSDTEFEEIG-SFGLRKFPSVEIDWDAI 255
BLAST of rna-TanjilR_01640 vs. DB:Swiss
Match: ERF57_ARATH (Ethylene-responsive transcription factor ERF057 OS=Arabidopsis thaliana OX=3702 GN=ERF057 PE=2 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 1.701e-39 Identity = 111/249 (44.58%), Postives = 141/249 (56.63%), Query Frame = 1 Query: 280 FGLNNLTPYQFNQIQAXXXXXXXXXXXXXXXLSFLSPKPVPMKQVGLPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTXXXXXXXXXXXXXXXRGDFARLNFPNLKHQGSCVGGAFGEYKPLHS-SVYAKLDAICD--DLXXXXXXXXXXXXXXXXXXXXXXQPQLQNNNNCKEETLLSTV-----------VTDCEGSDGSSPLSDLTFDDF-TEPQWETPSENFNLMKFPSYEIDWDSL 981 GLN LTP Q QIQ H + + + L+ KP MK++ + KP KLYRGVRQR WGKWVAEIRLPKNRTRLWLGTF+TA+EAALAYD+AA+K+RGD ARLNFP++ Q G YK + S S+ AK+++IC+ DL PQ++ N K E +LS + C G GSSP SD+T DF ++ E S L K+PS EIDWD++ Sbjct: 58 IGLNQLTPTQILQIQTELHLRQNQSRRRAGS-HLLTAKPTSMKKIDVATKPVKLYRGVRQRQWGKWVAEIRLPKNRTRLWLGTFETAQEAALAYDQAAHKIRGDNARLNFPDIVRQ--------GHYKQILSPSINAKIESICNSSDLPL---------------------PQIEKQN--KTEEVLSGFSKPEKEPEFGEIYGC-GYSGSSPESDITLLDFSSDCVKEDESFLMGLHKYPSLEIDWDAI 273
BLAST of rna-TanjilR_01640 vs. DB:Swiss
Match: ERF55_ARATH (Ethylene-responsive transcription factor ERF055 OS=Arabidopsis thaliana OX=3702 GN=ERF055 PE=2 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 1.497e-32 Identity = 128/318 (40.25%), Postives = 169/318 (53.14%), Query Frame = 1 Query: 64 ELMEVLSPFVKXXXXXXXXXXXXXXXXXXXXXXFPTQPN--FYTEGCPTMMTHLFDTGLSNSYNFI---GFEQPSSVFGLNNLTPYQF-NQIQAXXXXXXXXXXXXXXXLSFLSP-KPVPMKQ----VGLPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTXXXXXXXXXXXXXXXRGDFARLNFPNLKHQGSCVGGAFGEYKPLHSSVYAKLDAI-CDDLXXXXXXXXXXXXXXXXXXXXXXQPQLQNNNNCKEETLLSTVVTDCEGSDGSSPLSDLTFDDFTEPQWETPSENFNLMKFPSYEIDWDSL 981 ELME L PF K+ ST+ + + + F + PN F + LF + + SY I PSS FG + P + +Q + +N+ L+F+ P +P M Q G KP KLYRGVRQRHWGKWVAEIRLP+NRTRLWLGTFDTAEEAALAYD+AA+KLRGD ARLNFP L++Q GEY P+ ++V AKL+AI + + K E+ KR+K ++ QP ++ E+ S P SD+ + + +ENF L K PSYEIDW S+ Sbjct: 12 ELMEALQPFYKSASTSASNPAFASSNDA-----FASAPNDLFSSSSYYNPHASLFPSHSTTSYPDIYSGSMTYPSS-FGSDLQQPENYQSQFHYQNTITYTHQDNNTCMLNFIEPSQPGFMTQPGPSSGSVSKPAKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDRAAFKLRGDSARLNFPALRYQTGSSPSDTGEYGPIQAAVDAKLEAILAEPKNQPGKTERTSRKRAKAAASSAEQPSAPQQHSGSGESDGSGS-----------PTSDVMVQEMCQEPEMPWNENFMLGKCPSYEIDWASI 312
BLAST of rna-TanjilR_01640 vs. DB:Swiss
Match: ERF62_ARATH (Ethylene-responsive transcription factor ERF062 OS=Arabidopsis thaliana OX=3702 GN=ERF062 PE=2 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 3.745e-24 Identity = 61/83 (73.49%), Postives = 70/83 (84.34%), Query Frame = 1 Query: 430 PTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTXXXXXXXXXXXXXXXRGDFARLNFPNLKHQ---GS--CVGGAFGEYK 663 PTKLYRGVRQRHWGKWVAEIRLP+NRTR+WLGTF+TAE+AA+AYD AAY LRG+FA LNFP+LKHQ GS C+ + E K Sbjct: 228 PTKLYRGVRQRHWGKWVAEIRLPRNRTRVWLGTFETAEQAAMAYDTAAYILRGEFAHLNFPDLKHQLKSGSLRCMIASLLESK 310
BLAST of rna-TanjilR_01640 vs. DB:Swiss
Match: ERF61_ARATH (Ethylene-responsive transcription factor ERF061 OS=Arabidopsis thaliana OX=3702 GN=ERF061 PE=2 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 1.055e-21 Identity = 62/98 (63.27%), Postives = 74/98 (75.51%), Query Frame = 1 Query: 415 GLPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTXXXXXXXXXXXXXXXRGDFARLNFPNLKHQGSCVG-GAFGEYKPLHSSVYAKLDAIC 705 G K KLYRGVRQRHWGKWVAEIRLP+NR R+WLGT+DTAE AA AYD+AAYKLRG++ARLNFPNLK +G G + L ++V K+ +IC Sbjct: 127 GRVTKKKKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYDTAEAAAYAYDRAAYKLRGEYARLNFPNLKDPSELLGLGDSSKLIALKNAVDGKIQSIC 224
BLAST of rna-TanjilR_01640 vs. DB:Swiss
Match: ERF53_ARATH (Ethylene-responsive transcription factor ERF053 OS=Arabidopsis thaliana OX=3702 GN=ERF053 PE=1 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 1.205e-20 Identity = 58/84 (69.05%), Postives = 63/84 (75.00%), Query Frame = 1 Query: 433 TKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTXXXXXXXXXXXXXXXRGDFARLNFPNL---------KHQGSCVGGAFGE 657 TKLYRGVRQRHWGKWVAEIR P+NRTRLWLGTFDTAEEAA+AYD+ A+KLRG+ ARLNFP L HQ C G E Sbjct: 184 TKLYRGVRQRHWGKWVAEIRKPRNRTRLWLGTFDTAEEAAMAYDREAFKLRGETARLNFPELFLNKQEPTPVHQKQCETGTTSE 267
BLAST of rna-TanjilR_01640 vs. DB:Swiss
Match: ERF54_ARATH (Ethylene-responsive transcription factor ERF054 OS=Arabidopsis thaliana OX=3702 GN=ERF054 PE=2 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 2.444e-16 Identity = 48/61 (78.69%), Postives = 53/61 (86.89%), Query Frame = 1 Query: 433 TKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTXXXXXXXXXXXXXXXRGDFARLNFPN 615 TKLYRGVRQR WGKWVAEIR P++R RLWLGTFDTAEEAA+AYD+ A+KLRG A LNFP Sbjct: 140 TKLYRGVRQRQWGKWVAEIRKPRSRARLWLGTFDTAEEAAMAYDRQAFKLRGHSATLNFPE 200 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_01640 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_01640_La_Tanjil_v1.0 ID=rna-TanjilR_01640_La_Tanjil_v1.0; Name=rna-TanjilR_01640; organism=Lupinus angustifolius; type=mRNA; length=984bpback to top protein sequence of rna-TanjilR_01640_La_Tanjil_v1.0 >rna-TanjilR_01640_La_Tanjil_v1.0 ID=rna-TanjilR_01640_La_Tanjil_v1.0; Name=rna-TanjilR_01640_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=327bpback to top mRNA from alignment at Chr_LG09-CM007369.1:18478017..18479000- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_01640_La_Tanjil_v1.0 ID=rna-TanjilR_01640_La_Tanjil_v1.0; Name=rna-TanjilR_01640; organism=Lupinus angustifolius; type=mRNA; length=984bp; location=Sequence derived from: Chr_LG09-CM007369.1:18478017..18479000- (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG09-CM007369.1:18478017..18479000- >rna-TanjilR_01640_La_Tanjil_v1.0 ID=rna-TanjilR_01640_La_Tanjil_v1.0; Name=rna-TanjilR_01640; organism=Lupinus angustifolius; type=CDS; length=984bp; location=Sequence derived from: Chr_LG09-CM007369.1:18478017..18479000- (Lupinus angustifoliusback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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