rna-TanjilR_22304

Transcript Overview
Namerna-TanjilR_22304
Unique Namerna-TanjilR_22304_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length438
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG10-CM007370.1supercontigChr_LG10-CM007370.1:2996394..2996831 -Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananR088Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR089Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR099Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR104Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR109Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiR0108Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR0145Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR0148Cicer arietinum ICC 4958 genome v2Cicer arietinum
anccR0119Cajanus cajan Asha genome v1.0Cajanus cajan
anccR0150Cajanus cajan Asha genome v1.0Cajanus cajan
ancrR0133Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ancrR0146Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
anpsR0070Pisum sativum Cameor genome v1aPisum sativum
anpsR0111Pisum sativum Cameor genome v1aPisum sativum
anpvR0130Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR0141Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR0152Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anasR0093Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR0100Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR0102Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anzwsR0077Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anzwsR0113Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anzwsR0122Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
antifR0077Vicia faba cv. Tiffany genome v1.0Vicia faba
antifR0103Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR0079Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
antifR0118Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR0106Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
anvfhR0123Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
anvrvR0085Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvrvR0119Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvrvR0124Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvssR0091Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR0103Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvuaR0084Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvuaR0089Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvssR0137Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvuaR0102Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anavjR0089Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0106Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0111Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
ancarR0105Cicer arietinum
ancarR0118Cicer arietinum
ancarR0123Cicer arietinum
ancarR0130Cicer arietinum
anvumR0085Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR0090Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR0098Vigna umbellata FF25 genome v1.0Vigna umbellata
anvasR0087Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvasR0095Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0084Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvstR0092Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0134Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0131Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvunR0084Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anvunR0089Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anvunR0105Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
LR48_mrnaVigan10g020600Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vigan.01G022700.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Vfaba.Tiffany.R1.1g123520.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Va01G002160.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vigan.11G238400.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
jg47131.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Ca_00042.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Vum_01G00193.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Vum_11G01567.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Va10G002790.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
evm.model.Chr04.170Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vigun04g021201.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
rna-XM_014652779.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Psat01G0100000-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
LR48_mrnaVigan11g079700Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vigst.11G128900.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Cr_21370.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
evm.model.Chr03.850Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Psat1g038120.1Pisum sativum Cameor genome v1aPisum sativum
Vfaba.Hedin2.R1.1g162240.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
rna-KK1_008883Cajanus cajan Asha genome v1.0Cajanus cajan
Phvul.004G157900.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-TanjilR_32790Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_22304gene-TanjilG_22304_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_22304rna-TanjilR_22304_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_22304_La_Tanjil_v1.0rna-TanjilR_22304_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_22304_La_Tanjil_v1.0-CDS-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:2996394..2996831rna-TanjilR_22304_La_Tanjil_v1.0-CDS-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:2996394..2996831Lupinus angustifoliusCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_22304_La_Tanjil_v1.0-exon-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:2996394..2996831rna-TanjilR_22304_La_Tanjil_v1.0-exon-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:2996394..2996831Lupinus angustifoliusexon


Homology
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_22304 vs.
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_22304_La_Tanjil_v1.0 ID=rna-TanjilR_22304_La_Tanjil_v1.0; Name=rna-TanjilR_22304; organism=Lupinus angustifolius; type=mRNA; length=438bp
ATGGAAGTAGAAAAAATCAGAAAGAAGAACAAGAGAGTCTTCATAGAAGA
TGTGTTGCATGAAGAGGAGGAAGAAGAAGAAGCCGATAAGGAAGAGAATA
GTGACCATAGATTGAAGAAATTGAAGGCAGGTCAAGAAACTGCTTTTACC
GGAGCCGGTTGTAGCAATAGTGGGGTGGTGCCCACGGAAGAGGAGGTGGA
GGAGTTTTTTGCCATATTGAGGAGGATGAAGGTGGCAGTCAAATACTTCC
ATAATAAAGGAAAAGTGGGTGGCAATCAGTGGAGGGAGGAACTGGAGCAG
GTGGATGTCACGGTGGACGACGACGGCACCGGGGTCGATGGAGTTGTTGA
CGGTAAGAAGGGTGGGAAGGTCATAATTAATGAGGGGTTAGATTTGAATA
CGGTGGCTCCTGAATCATCCGAGAGCGGTGGCGCGTAG
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protein sequence of rna-TanjilR_22304_La_Tanjil_v1.0

>rna-TanjilR_22304_La_Tanjil_v1.0 ID=rna-TanjilR_22304_La_Tanjil_v1.0; Name=rna-TanjilR_22304_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=145bp
MEVEKIRKKNKRVFIEDVLHEEEEEEEADKEENSDHRLKKLKAGQETAFT
GAGCSNSGVVPTEEEVEEFFAILRRMKVAVKYFHNKGKVGGNQWREELEQ
VDVTVDDDGTGVDGVVDGKKGGKVIINEGLDLNTVAPESSESGGA
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mRNA from alignment at Chr_LG10-CM007370.1:2996394..2996831-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_22304_La_Tanjil_v1.0 ID=rna-TanjilR_22304_La_Tanjil_v1.0; Name=rna-TanjilR_22304; organism=Lupinus angustifolius; type=mRNA; length=438bp; location=Sequence derived from: Chr_LG10-CM007370.1:2996394..2996831- (Lupinus angustifolius
ATGGAAGTAGAAAAAATCAGAAAGAAGAACAAGAGAGTCTTCATAGAAGA
TGTGTTGCATGAAGAGGAGGAAGAAGAAGAAGCCGATAAGGAAGAGAATA
GTGACCATAGATTGAAGAAATTGAAGGCAGGTCAAGAAACTGCTTTTACC
GGAGCCGGTTGTAGCAATAGTGGGGTGGTGCCCACGGAAGAGGAGGTGGA
GGAGTTTTTTGCCATATTGAGGAGGATGAAGGTGGCAGTCAAATACTTCC
ATAATAAAGGAAAAGTGGGTGGCAATCAGTGGAGGGAGGAACTGGAGCAG
GTGGATGTCACGGTGGACGACGACGGCACCGGGGTCGATGGAGTTGTTGA
CGGTAAGAAGGGTGGGAAGGTCATAATTAATGAGGGGTTAGATTTGAATA
CGGTGGCTCCTGAATCATCCGAGAGCGGTGGCGCGTAG
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Coding sequence (CDS) from alignment at Chr_LG10-CM007370.1:2996394..2996831-

>rna-TanjilR_22304_La_Tanjil_v1.0 ID=rna-TanjilR_22304_La_Tanjil_v1.0; Name=rna-TanjilR_22304; organism=Lupinus angustifolius; type=CDS; length=438bp; location=Sequence derived from: Chr_LG10-CM007370.1:2996394..2996831- (Lupinus angustifolius
ATGGAAGTAGAAAAAATCAGAAAGAAGAACAAGAGAGTCTTCATAGAAGA
TGTGTTGCATGAAGAGGAGGAAGAAGAAGAAGCCGATAAGGAAGAGAATA
GTGACCATAGATTGAAGAAATTGAAGGCAGGTCAAGAAACTGCTTTTACC
GGAGCCGGTTGTAGCAATAGTGGGGTGGTGCCCACGGAAGAGGAGGTGGA
GGAGTTTTTTGCCATATTGAGGAGGATGAAGGTGGCAGTCAAATACTTCC
ATAATAAAGGAAAAGTGGGTGGCAATCAGTGGAGGGAGGAACTGGAGCAG
GTGGATGTCACGGTGGACGACGACGGCACCGGGGTCGATGGAGTTGTTGA
CGGTAAGAAGGGTGGGAAGGTCATAATTAATGAGGGGTTAGATTTGAATA
CGGTGGCTCCTGAATCATCCGAGAGCGGTGGCGCGTAG
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