rna-TanjilR_19346
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_19346 vs. DB:Swiss
Match: SIA1_ARATH (Sialyltransferase-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=SIA1 PE=2 SV=1) HSP 1 Score: 233.417 bits (594), Expect = 3.218e-65 Identity = 118/184 (64.13%), Postives = 132/184 (71.74%), Query Frame = 3
Query: 4680 TRYFSDPRKGHNPLQGRAYYQLLECLGVFTLILNFYIKRTLCLLNVSDIRFYYQVIRIHSPMRSARRQDWSDVPSREMISEANAAALRLKKSQA------SDIGQFGNCKVWGNVNPEKSGPISGTSDMSDVRKFSNYSKWEVMPFKSLRKEAQDHYMQMQEVSLYKMDGNKLDDLVCVRHSLK 5213
TRYFS PRKGHNPLQGRAYYQLLECLG VIRIHSPMRS R++DWS VPSREMIS A+ AALRL++SQ GQFGNCKVWG+ +P K GP+SG+ DMS+ RK SNY KWEVMPF+SLRKEA+DHY+QM+ VS YKMDGNKLDDLVCVRH LK
Sbjct: 316 TRYFSTPRKGHNPLQGRAYYQLLECLG---------------------------VIRIHSPMRSERKEDWSSVPSREMISRAHTAALRLQRSQQPTSSKRDGSGQFGNCKVWGDADPTK-GPVSGSPDMSETRKKSNYKKWEVMPFRSLRKEARDHYIQMKGVSQYKMDGNKLDDLVCVRHPLK 471 HSP 2 Score: 196.438 bits (498), Expect = 6.760e-61 Identity = 102/190 (53.68%), Postives = 112/190 (58.95%), Query Frame = 3
Query: 1839 YNAQFKKFEPLEYNYNMCETILLWEQVDHHSF*PVFELYFQDESVLNTEMLGMLQYRNMTTVLTREYLEARPDGWVHYAPLRIAQLYVSQILTLMFVTDIIVLLFDMSVLL*KMSNYTLSSCRGTKKCHNRTLCEEHLNILLPAKPPFRPRQFRTCAVVGNSGDLLKTEFGKEIDSHDAVFRDNEAPVNE 2408
YNAQFK FE LE+ YN+CE +LLWEQ YRNMTTVLTREYL+ RPDGW+ YA +RIAQL G KC+NRTLCEEHLN++LPAKPPF PRQF CAVVGNSGDLLKTEFG+EIDSHDAVFRDNEAPVNE
Sbjct: 92 YNAQFKVFEALEFKYNVCEAVLLWEQ-----------------------------YRNMTTVLTREYLDVRPDGWLDYAAMRIAQL-------------------------------------GADKCYNRTLCEEHLNVILPAKPPFHPRQFHKCAVVGNSGDLLKTEFGEEIDSHDAVFRDNEAPVNE 215 HSP 3 Score: 63.1586 bits (152), Expect = 6.760e-61 Identity = 26/31 (83.87%), Postives = 29/31 (93.55%), Query Frame = 1
Query: 1663 ANRGLGLTAHIVDHCKLILKYPEGTNSTWVN 1755
ANRGLGL+AHI+DHC LILK+PEGTNSTW N
Sbjct: 63 ANRGLGLSAHIIDHCNLILKFPEGTNSTWYN 93 HSP 4 Score: 117.087 bits (292), Expect = 7.557e-26 Identity = 64/116 (55.17%), Postives = 68/116 (58.62%), Query Frame = 2
Query: 3737 ADNEVLIIKSVTHREINAVIKVKICSLLAYLFDAFWNIKYKLIIDGSKXXXXXXXXXXXXXXXXXXXIPNPVYLFQGIVLRRGAKGTGMKSIELALSMCDIVDMYGFTVDPGYTEW 4084
+DNEVLIIKSVTHR+ N +IK IPNPVYLFQGIVLRRGAKGTGMKSIELALSMCDIVD+YGFTVDPGYTEW
Sbjct: 245 SDNEVLIIKSVTHRDFNEMIK---------------------------------------------RIPNPVYLFQGIVLRRGAKGTGMKSIELALSMCDIVDIYGFTVDPGYTEW 315 HSP 5 Score: 58.9214 bits (141), Expect = 3.491e-7 Identity = 29/39 (74.36%), Postives = 35/39 (89.74%), Query Frame = 2
Query: 2711 KYAKYVGLKRDFRLVVRGAARNMVPILNGS-GKLLFMKA 2824
KYAKYVG+KRDFRLVVRGAARNM+ ILNGS ++L +K+
Sbjct: 216 KYAKYVGVKRDFRLVVRGAARNMIKILNGSDNEVLIIKS 254
BLAST of rna-TanjilR_19346 vs. DB:Swiss
Match: STLP5_ORYSJ (Sialyltransferase-like protein 5 OS=Oryza sativa subsp. japonica OX=39947 GN=STLP5 PE=2 SV=1) HSP 1 Score: 220.32 bits (560), Expect = 1.449e-60 Identity = 111/182 (60.99%), Postives = 126/182 (69.23%), Query Frame = 3
Query: 4680 TRYFSDPRKGHNPLQGRAYYQLLECLGVFTLILNFYIKRTLCLLNVSDIRFYYQVIRIHSPMRSARRQDWSDVPSREMISEANAAALRLKK---SQASDIGQFGNCKVWGNVNPEKSGPISGTSDMSDVRKFSNYSKWEVMPFKSLRKEAQDHYMQMQEVSLYKMDGNKLDDLVCVRHSLKS 5216
TRYFS PRKGHNPLQGRAYYQLLECLG VIRIHSPMR+ R +DWSD+PSRE I A+AAA RLK+ Q+ +G F NCKVWG V+P+ GP+SGT DMS+ RK SNY KWEV+PF SLR EAQ+H++QM VSLYKMDGNKLDDLVCVRH S
Sbjct: 326 TRYFSPPRKGHNPLQGRAYYQLLECLG---------------------------VIRIHSPMRAKRVEDWSDIPSREEIRTAHAAAFRLKRHETGQSDQMGPFSNCKVWGTVDPD-YGPVSGTPDMSETRKSSNYKKWEVLPFDSLRMEAQEHHVQMGGVSLYKMDGNKLDDLVCVRHERSS 479 HSP 2 Score: 195.667 bits (496), Expect = 8.686e-60 Identity = 103/190 (54.21%), Postives = 113/190 (59.47%), Query Frame = 3
Query: 1839 YNAQFKKFEPLEYNYNMCETILLWEQVDHHSF*PVFELYFQDESVLNTEMLGMLQYRNMTTVLTREYLEARPDGWVHYAPLRIAQLYVSQILTLMFVTDIIVLLFDMSVLL*KMSNYTLSSCRGTKKCHNRTLCEEHLNILLPAKPPFRPRQFRTCAVVGNSGDLLKTEFGKEIDSHDAVFRDNEAPVNE 2408
YN QFK FEPLEYNY++CETILLWEQ YRNMTTVLTREYL+ RPDGW+ YA RIAQL G KC+NRTLCEE L++LLPAKPPF PRQF TCAVVGNSGDLLKTEFG+EID+HDAVFRDNEAPVN+
Sbjct: 102 YNTQFKYFEPLEYNYDVCETILLWEQ-----------------------------YRNMTTVLTREYLDVRPDGWLDYAAKRIAQL-------------------------------------GADKCYNRTLCEELLSVLLPAKPPFHPRQFATCAVVGNSGDLLKTEFGQEIDAHDAVFRDNEAPVNK 225 HSP 3 Score: 60.077 bits (144), Expect = 8.686e-60 Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 1
Query: 1663 ANRGLGLTAHIVDHCKLILKYPEGTNSTWVNISIPY 1770
A RGLGLTA I+DHCKL+L++P+GTNSTW N Y
Sbjct: 73 ARRGLGLTADIIDHCKLVLRFPKGTNSTWYNTQFKY 108 HSP 4 Score: 114.39 bits (285), Expect = 7.658e-25 Identity = 62/116 (53.45%), Postives = 68/116 (58.62%), Query Frame = 2
Query: 3737 ADNEVLIIKSVTHREINAVIKVKICSLLAYLFDAFWNIKYKLIIDGSKXXXXXXXXXXXXXXXXXXXIPNPVYLFQGIVLRRGAKGTGMKSIELALSMCDIVDMYGFTVDPGYTEW 4084
+ +EVLIIKS+TH+EINAVIK +PNPVYLFQGIVLRRGAKGTGMKSIELALSMCDI+DMYGFTVDP YTEW
Sbjct: 255 SSDEVLIIKSLTHKEINAVIK---------------------------------------------ELPNPVYLFQGIVLRRGAKGTGMKSIELALSMCDIIDMYGFTVDPNYTEW 325 HSP 5 Score: 60.4622 bits (145), Expect = 9.282e-8 Identity = 30/42 (71.43%), Postives = 34/42 (80.95%), Query Frame = 2
Query: 2711 KYAKYVGLKRDFRLVVRGAARNMVPILNGSG-KLLFMKAFQQ 2833
KYAKYVGLKRDFRLVVRGAARNM PIL GS ++L +K+
Sbjct: 226 KYAKYVGLKRDFRLVVRGAARNMAPILKGSSDEVLIIKSLTH 267
BLAST of rna-TanjilR_19346 vs. DB:Swiss
Match: STLP4_ORYSJ (Sialyltransferase-like protein 4 OS=Oryza sativa subsp. japonica OX=39947 GN=STLP4 PE=2 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 4.118e-28 Identity = 69/186 (37.10%), Postives = 88/186 (47.31%), Query Frame = 3
Query: 1863 EPLEYNYNMCETILLWEQVDHHSF*PVFELYFQDESVLNTEMLGMLQYRNMTTVLTREYLEARPDGWVHYAPLRIAQLYVSQILTLMFVTDIIVLLFDMSVLL*KMSNYTLSSCRGTKKCHNRTLCEEHLNILLPAKPPFRPRQFRTCAVVGNSGDLLKTEFGKEIDSHDAVFRDNEAPVNEVITY 2420
E L + +N+CE + WEQV RN TT+LT+EY++A P+GW YA RI + + L KC NRTLC E L+++LP PP+ PRQF CAVVGNSGDLLKT+FG EIDS+D V R+N AP+ Y
Sbjct: 92 EGLSFEFNLCEAVASWEQV-----------------------------RNSTTILTKEYIDALPNGWEEYAWRRI----------------------NKGIHL--------------NKCQNRTLCMEKLSLVLPETPPYVPRQFGRCAVVGNSGDLLKTKFGDEIDSYDVVIRENGAPIQNYTEY 212 HSP 2 Score: 30.0314 bits (66), Expect = 4.118e-28 Identity = 14/38 (36.84%), Postives = 22/38 (57.89%), Query Frame = 1
Query: 1672 GLGLTA-HIVDHCKLILKYPEGTNSTWVNISIPYPFFL 1782
GLGL A D+C+++++YP T+S W + P L
Sbjct: 57 GLGLKAIPGEDYCRVVIQYPSDTDSKWKDPKTGEPEGL 94 HSP 3 Score: 76.6406 bits (187), Expect = 7.265e-13 Identity = 34/49 (69.39%), Postives = 37/49 (75.51%), Query Frame = 2
Query: 3938 IPNPVYLFQGIVLRRGAKGTGMKSIELALSMCDIVDMYGFTVDPGYTEW 4084
I NPVYL G AKGTG+K++E ALSMCD VDMYGFTVDPGY EW
Sbjct: 263 ITNPVYLMLGTSFGSSAKGTGLKALEFALSMCDSVDMYGFTVDPGYKEW 311 HSP 4 Score: 64.3142 bits (155), Expect = 5.896e-9 Identity = 38/108 (35.19%), Postives = 53/108 (49.07%), Query Frame = 3
Query: 4680 TRYFSDPRKGHNPLQGRAYYQLLECLGVFTLILNFYIKRTLCLLNVSDIRFYYQVIRIHSPMRS--ARRQDWSDVPSREMISEANAAALR-LKKSQASDIGQFGNCKV 4994
TRYFS+ RKGH PL GRAYYQ++ECLG +++IHSPMR R W+ P+++ I A A+ + LK+ A G +C +
Sbjct: 312 TRYFSESRKGHTPLHGRAYYQMMECLG---------------------------LVKIHSPMRGDPGRVVKWA--PTKDTIEAARVASEKLLKRPGAGSEGPLSSCTM 390
BLAST of rna-TanjilR_19346 vs. DB:Swiss
Match: SIA2_ARATH (Sialyltransferase-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=SIA2 PE=2 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 2.842e-25 Identity = 64/188 (34.04%), Postives = 90/188 (47.87%), Query Frame = 3
Query: 1857 KFEPLEYNYNMCETILLWEQVDHHSF*PVFELYFQDESVLNTEMLGMLQYRNMTTVLTREYLEARPDGWVHYAPLRIAQLYVSQILTLMFVTDIIVLLFDMSVLL*KMSNYTLSSCRGTKKCHNRTLCEEHLNILLPAKPPFRPRQFRTCAVVGNSGDLLKTEFGKEIDSHDAVFRDNEAPVNEVITY 2420
+ E L Y +++CE + WEQV RN +T+LT+EY++A P+GW YA RI + + L +C N++LC E L+++LP PP+ PRQF CAV+GNSGDLLKT+FGKEID++D V R+N AP+ Y
Sbjct: 91 ELEGLSYEFDLCEAVATWEQV-----------------------------RNSSTILTKEYIDALPNGWEDYAWRRI----------------------NKGIQL--------------NRCQNKSLCIEKLSLVLPETPPYFPRQFGRCAVIGNSGDLLKTKFGKEIDTYDTVLRENGAPIQNYKEY 213 HSP 2 Score: 74.7146 bits (182), Expect = 3.182e-12 Identity = 33/49 (67.35%), Postives = 36/49 (73.47%), Query Frame = 2
Query: 3938 IPNPVYLFQGIVLRRGAKGTGMKSIELALSMCDIVDMYGFTVDPGYTEW 4084
I NPVYL G AKGTG+K++E ALS CD VDMYGFTVDPGY EW
Sbjct: 264 IKNPVYLMLGASFGSAAKGTGLKALEFALSTCDSVDMYGFTVDPGYKEW 312 HSP 3 Score: 66.2402 bits (160), Expect = 1.643e-9 Identity = 49/174 (28.16%), Postives = 71/174 (40.80%), Query Frame = 3
Query: 4680 TRYFSDPRKGHNPLQGRAYYQLLECLGVFTLILNFYIKRTLCLLNVSDIRFYYQVIRIHSPMRSARRQDWSDVPSREMISEANAAALR-LKKSQASDIGQFGNCKVWGNVNPEKSGPISGTSDMSDVRKFSNYSKWEVMPFKSLRKEAQDHYMQMQEVSLYKMDGNKLDDLVCV 5198
TRYFS+ R+GH PL GRAYYQ++ECLG +I+IHSPMR+ + VPSR I A AA + L++ A +C + N K +S LRK DH ++ S+Y ++ + +C+
Sbjct: 313 TRYFSESRQGHTPLHGRAYYQMMECLG---------------------------LIKIHSPMRADPNRVVKWVPSRSTIRSARIAAEKLLRRVGAGSADPLASCSIVKKRNKNKRPMVS-----------------------HLRKPVSDHQKFVRSTSMYPVEHSPGHGQLCI 436
BLAST of rna-TanjilR_19346 vs. DB:Swiss
Match: SIA8D_PANTR (CMP-N-acetylneuraminate-poly-alpha-2,8-sialyltransferase OS=Pan troglodytes OX=9598 GN=ST8SIA4 PE=2 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 5.135e-10 Identity = 37/61 (60.66%), Postives = 43/61 (70.49%), Query Frame = 3
Query: 2229 RTLCEEH-LNILLPAKPPFRPRQFRTCAVVGNSGDLLKTEFGKEIDSHDAVFRDNEAPVNE 2408
RTL H L+ LLP P + R+F+TCAVVGNSG LL +E GKEIDSH+ V R N APV E
Sbjct: 116 RTLNISHDLHSLLPEVSPMKNRRFKTCAVVGNSGILLDSECGKEIDSHNFVIRCNLAPVVE 176
BLAST of rna-TanjilR_19346 vs. DB:Swiss
Match: SIA8D_HUMAN (CMP-N-acetylneuraminate-poly-alpha-2,8-sialyltransferase OS=Homo sapiens OX=9606 GN=ST8SIA4 PE=1 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 5.135e-10 Identity = 37/61 (60.66%), Postives = 43/61 (70.49%), Query Frame = 3
Query: 2229 RTLCEEH-LNILLPAKPPFRPRQFRTCAVVGNSGDLLKTEFGKEIDSHDAVFRDNEAPVNE 2408
RTL H L+ LLP P + R+F+TCAVVGNSG LL +E GKEIDSH+ V R N APV E
Sbjct: 116 RTLNISHDLHSLLPEVSPMKNRRFKTCAVVGNSGILLDSECGKEIDSHNFVIRCNLAPVVE 176
BLAST of rna-TanjilR_19346 vs. DB:Swiss
Match: SIA8D_BOVIN (CMP-N-acetylneuraminate-poly-alpha-2,8-sialyltransferase OS=Bos taurus OX=9913 GN=ST8SIA4 PE=2 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 1.003e-9 Identity = 36/61 (59.02%), Postives = 43/61 (70.49%), Query Frame = 3
Query: 2229 RTL-CEEHLNILLPAKPPFRPRQFRTCAVVGNSGDLLKTEFGKEIDSHDAVFRDNEAPVNE 2408
RTL + L+ LLP P + R+F+TCAVVGNSG LL +E GKEIDSH+ V R N APV E
Sbjct: 116 RTLNISQDLHSLLPEVSPMKNRRFKTCAVVGNSGILLDSECGKEIDSHNFVIRCNLAPVVE 176
BLAST of rna-TanjilR_19346 vs. DB:Swiss
Match: SIA8D_CRIGR (CMP-N-acetylneuraminate-poly-alpha-2,8-sialyltransferase OS=Cricetulus griseus OX=10029 GN=ST8SIA4 PE=1 SV=1) HSP 1 Score: 64.6994 bits (156), Expect = 3.082e-9 Identity = 36/61 (59.02%), Postives = 42/61 (68.85%), Query Frame = 3
Query: 2229 RTLCEEH-LNILLPAKPPFRPRQFRTCAVVGNSGDLLKTEFGKEIDSHDAVFRDNEAPVNE 2408
RTL H L+ LLP P + R+F+TCAVVGNSG LL + GKEIDSH+ V R N APV E
Sbjct: 116 RTLNISHDLHSLLPEVSPMKNRRFKTCAVVGNSGILLDSGCGKEIDSHNFVIRCNLAPVVE 176
BLAST of rna-TanjilR_19346 vs. DB:Swiss
Match: SIA8D_MOUSE (CMP-N-acetylneuraminate-poly-alpha-2,8-sialyltransferase OS=Mus musculus OX=10090 GN=St8sia4 PE=2 SV=1) HSP 1 Score: 64.6994 bits (156), Expect = 3.166e-9 Identity = 36/61 (59.02%), Postives = 42/61 (68.85%), Query Frame = 3
Query: 2229 RTLCEEH-LNILLPAKPPFRPRQFRTCAVVGNSGDLLKTEFGKEIDSHDAVFRDNEAPVNE 2408
RTL H L+ LLP P + R+F+TCAVVGNSG LL + GKEIDSH+ V R N APV E
Sbjct: 116 RTLNISHNLHSLLPEVSPMKNRRFKTCAVVGNSGILLDSGCGKEIDSHNFVIRCNLAPVVE 176
BLAST of rna-TanjilR_19346 vs. DB:Swiss
Match: SIA4B_RAT (CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 2 OS=Rattus norvegicus OX=10116 GN=St3gal2 PE=2 SV=1) HSP 1 Score: 59.6918 bits (143), Expect = 1.029e-7 Identity = 29/64 (45.31%), Postives = 42/64 (65.62%), Query Frame = 3
Query: 2217 KCHNRTLCEEHLNILLPAKPPFR---PRQFRTCAVVGNSGDLLKTEFGKEIDSHDAVFRDNEAP 2399
K HN E L ++P + P+R P+Q R CAVVGNSG+L + +G+E+DSH+ + R N+AP
Sbjct: 120 KSHNTNEVLEKLFQIVPGENPYRFRDPQQCRRCAVVGNSGNLRGSGYGQEVDSHNFIMRMNQAP 183 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_19346 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_19346_La_Tanjil_v1.0 ID=rna-TanjilR_19346_La_Tanjil_v1.0; Name=rna-TanjilR_19346; organism=Lupinus angustifolius; type=mRNA; length=5365bpback to top protein sequence of rna-TanjilR_19346_La_Tanjil_v1.0 >rna-TanjilR_19346_La_Tanjil_v1.0 ID=rna-TanjilR_19346_La_Tanjil_v1.0; Name=rna-TanjilR_19346_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=478bpback to top mRNA from alignment at Chr_LG10-CM007370.1:14860325..14865689+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_19346_La_Tanjil_v1.0 ID=rna-TanjilR_19346_La_Tanjil_v1.0; Name=rna-TanjilR_19346; organism=Lupinus angustifolius; type=mRNA; length=5365bp; location=Sequence derived from: Chr_LG10-CM007370.1:14860325..14865689+ (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG10-CM007370.1:14860325..14865689+ >rna-TanjilR_19346_La_Tanjil_v1.0 ID=rna-TanjilR_19346_La_Tanjil_v1.0; Name=rna-TanjilR_19346; organism=Lupinus angustifolius; type=CDS; length=1437bp; location=Sequence derived from: Chr_LG10-CM007370.1:14860325..14865689+ (Lupinus angustifoliusback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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