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Transcript Overview
Name | rna-TanjilR_19345 |
Unique Name | rna-TanjilR_19345_La_Tanjil_v1.0 |
Type | mRNA |
Organism | Lupinus angustifolius (blue lupin) |
Sequence length | 1833 |
Product | hypothetical protein |
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
rna-TanjilR_19345 | rna-TanjilR_19345_La_Tanjil_v1.0-protein | Lupinus angustifolius | polypeptide |
rna-TanjilR_19345_La_Tanjil_v1.0 | rna-TanjilR_19345_La_Tanjil_v1.0 | Lupinus angustifolius | polypeptide |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
rna-TanjilR_19345_La_Tanjil_v1.0-CDS-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14873049..14873138 | rna-TanjilR_19345_La_Tanjil_v1.0-CDS-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14873049..14873138 | Lupinus angustifolius | CDS |
rna-TanjilR_19345_La_Tanjil_v1.0-CDS-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14872268..14872482 | rna-TanjilR_19345_La_Tanjil_v1.0-CDS-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14872268..14872482 | Lupinus angustifolius | CDS |
rna-TanjilR_19345_La_Tanjil_v1.0-CDS-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14871306..14871603 | rna-TanjilR_19345_La_Tanjil_v1.0-CDS-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14871306..14871603 | Lupinus angustifolius | CDS |
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
rna-TanjilR_19345_La_Tanjil_v1.0-exon-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14873049..14873138 | rna-TanjilR_19345_La_Tanjil_v1.0-exon-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14873049..14873138 | Lupinus angustifolius | exon |
rna-TanjilR_19345_La_Tanjil_v1.0-exon-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14872268..14872482 | rna-TanjilR_19345_La_Tanjil_v1.0-exon-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14872268..14872482 | Lupinus angustifolius | exon |
rna-TanjilR_19345_La_Tanjil_v1.0-exon-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14871306..14871603 | rna-TanjilR_19345_La_Tanjil_v1.0-exon-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14871306..14871603 | Lupinus angustifolius | exon |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR009606 | Modifying wall lignin-1/2 | PFAM | PF06749 | DUF1218 | coord: 63..154 e-value: 2.7E-14 score: 53.4 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_19345_La_Tanjil_v1.0 ID=rna-TanjilR_19345_La_Tanjil_v1.0; Name=rna-TanjilR_19345; organism=Lupinus angustifolius; type=mRNA; length=1833bp ATGGCTCCTACGATTAAACAAATGGCTCTCATTATCTCCTTCTTTGGTTT TGTCTCTTTTATACTTGGTATTCTTGCTGAAAACAAAAAGGTCATTAATT ACTTATCCTCTATCATATTGGATTTCAACTCTTACTTTATTTTTAATTTA TAATCGTTATTTTTATCAATTCATTACAATTTATCCCATCCTCGACTATT GCACGAGACTTCTAGGTTTGGGAGTATAGACTGACACACAATCGTATCCC AAAAGCAACAACTAAGAATTTGTTTTCAAGATTAAATCTATAAATTATTG TGTGACAAGACACCAATGTAATCATTATGCCCAGGGTCAAATTTCAATGT ATTTGAAAATTGTCATACCTAATTAATCTAGTCTATATCGTTATGGAGAC TATAGATATCATAGCTGAAACTATGGTTCAACGGTTGATGGCAATAGTGC ATATAGTATATGAGATGAGCTAATGAATTCATAACAAGTACAAATTTATT TTATTGTATCCATAATATAAATTGGTGATTGTTGTGTAATAGTTTTAATA TGTTTTATTTTTTAGGCTTGTTCATTCTATTACTTATATTCGTGTTTTAT TGCTAATATATATTTTCCTCATACACATGAAATATTTGTTGTTATTGTTG TTATAGCCTGTAGCTGGAACCCCAATACCTAATGGGAATGGTGTAACATG CAAGTACCCAACTGATCCAAGTGTGACATTAGGATATCTTTCTACAATGT TTCTTATTGGATCCACTGTGGTTGGTTATCTCTCTCTATTCTACCCTTAC AAAGGAAAATCAATATCACAAGGGGTTCTCTTTAAACACACTACTTTTGT GGTGTTCTTTAATGTTGCATTGTAAGTGCTCACATTTTTCCTTATCCTTA TATGATTACCATTCTAGCTATTGTACAATATATTTTTCCATTTTTTATTG TTCATAGAAATGTAATATTTGTCATGATTATCTTAGAGTTGATTCTTGTT GAATTGTTTTAGATCAAAATTTCTAGTTTTTATATTGCTTTCACATCTAT GATTCATCCATGTCTCATAATTAGACAGAGTTGACGCTTGTTACTAACTT ATAATGCATTAGTCTGCATATGAAAGGCTACTTTCAGTTAATGGCATTGT CGGTGTTATTTTCTTATATATATAAATATATACATTGTTCTAGTTTTCAT ATCGACAAATGCCGGAACACTATGAACAAATGCCGGAACACTATGTTGGT ATGCAAGTTCGTTCAAGTGTCTCACATATTTAGGGAAGGGAATGCTTGTA TAGACAAGTTGGCAAACTTTGGTGTGAATTCTAGAATGGATTATTGGTGG AATTATCCTCCTTCCTTCTTGTTGCATGATTTTCATAGAAATATGTTGCT TCTCCCGAACTATAGGTTTAGGGGCTTGTAATAGTTCTTTACTTCGACAT CGTTAATATATCTGTGGCTGTAGTTTCACCCTTGCTTTAAAAAAAATATG AATGAATTGTTCTTCTTTGAAATGTATTTTCTTAGGTTTACTACCGGATT AGCTACAACTATGCTTTTGTGGCCAACAATCACTGAGCAAATTCACTTGT CTCATAATGTGCATAGTGATATCAACTATGAATGTCCTACAGCTAAAACT GGTCTTCTTGGAGGTGGTGCATTTTTATCACTTGATTCATCTCTATTTTG GTTGATAACACTTATGTTAGTTGATAATGTTCGTGAGGATTTCTTTGATG GAGAAGATGGTGATAAAGGTGAATTTGGTAAAGCTTCTTCAAATGCTTAC AATGTAGATATAGGAGTGAATGGGAGCTTGTGA back to topprotein sequence of rna-TanjilR_19345_La_Tanjil_v1.0 >rna-TanjilR_19345_La_Tanjil_v1.0 ID=rna-TanjilR_19345_La_Tanjil_v1.0; Name=rna-TanjilR_19345_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=200bp MAPTIKQMALIISFFGFVSFILGILAENKKPVAGTPIPNGNGVTCKYPTD PSVTLGYLSTMFLIGSTVVGYLSLFYPYKGKSISQGVLFKHTTFVVFFNV ALFTTGLATTMLLWPTITEQIHLSHNVHSDINYECPTAKTGLLGGGAFLS LDSSLFWLITLMLVDNVREDFFDGEDGDKGEFGKASSNAYNVDIGVNGSL back to topmRNA from alignment at Chr_LG10-CM007370.1:14871306..14873138- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >rna-TanjilR_19345_La_Tanjil_v1.0 ID=rna-TanjilR_19345_La_Tanjil_v1.0; Name=rna-TanjilR_19345; organism=Lupinus angustifolius; type=mRNA; length=1833bp; location=Sequence derived from: Chr_LG10-CM007370.1:14871306..14873138- (Lupinus angustifolius ATGGCTCCTACGATTAAACAAATGGCTCTCATTATCTCCTTCTTTGGTTT
TGTCTCTTTTATACTTGGTATTCTTGCTGAAAACAAAAAGGTCATTAATT
ACTTATCCTCTATCATATTGGATTTCAACTCTTACTTTATTTTTAATTTA
TAATCGTTATTTTTATCAATTCATTACAATTTATCCCATCCTCGACTATT
GCACGAGACTTCTAGGTTTGGGAGTATAGACTGACACACAATCGTATCCC
AAAAGCAACAACTAAGAATTTGTTTTCAAGATTAAATCTATAAATTATTG
TGTGACAAGACACCAATGTAATCATTATGCCCAGGGTCAAATTTCAATGT
ATTTGAAAATTGTCATACCTAATTAATCTAGTCTATATCGTTATGGAGAC
TATAGATATCATAGCTGAAACTATGGTTCAACGGTTGATGGCAATAGTGC
ATATAGTATATGAGATGAGCTAATGAATTCATAACAAGTACAAATTTATT
TTATTGTATCCATAATATAAATTGGTGATTGTTGTGTAATAGTTTTAATA
TGTTTTATTTTTTAGGCTTGTTCATTCTATTACTTATATTCGTGTTTTAT
TGCTAATATATATTTTCCTCATACACATGAAATATTTGTTGTTATTGTTG
TTATAGCCTGTAGCTGGAACCCCAATACCTAATGGGAATGGTGTAACATG
CAAGTACCCAACTGATCCAAGTGTGACATTAGGATATCTTTCTACAATGT
TTCTTATTGGATCCACTGTGGTTGGTTATCTCTCTCTATTCTACCCTTAC
AAAGGAAAATCAATATCACAAGGGGTTCTCTTTAAACACACTACTTTTGT
GGTGTTCTTTAATGTTGCATTGTAAGTGCTCACATTTTTCCTTATCCTTA
TATGATTACCATTCTAGCTATTGTACAATATATTTTTCCATTTTTTATTG
TTCATAGAAATGTAATATTTGTCATGATTATCTTAGAGTTGATTCTTGTT
GAATTGTTTTAGATCAAAATTTCTAGTTTTTATATTGCTTTCACATCTAT
GATTCATCCATGTCTCATAATTAGACAGAGTTGACGCTTGTTACTAACTT
ATAATGCATTAGTCTGCATATGAAAGGCTACTTTCAGTTAATGGCATTGT
CGGTGTTATTTTCTTATATATATAAATATATACATTGTTCTAGTTTTCAT
ATCGACAAATGCCGGAACACTATGAACAAATGCCGGAACACTATGTTGGT
ATGCAAGTTCGTTCAAGTGTCTCACATATTTAGGGAAGGGAATGCTTGTA
TAGACAAGTTGGCAAACTTTGGTGTGAATTCTAGAATGGATTATTGGTGG
AATTATCCTCCTTCCTTCTTGTTGCATGATTTTCATAGAAATATGTTGCT
TCTCCCGAACTATAGGTTTAGGGGCTTGTAATAGTTCTTTACTTCGACAT
CGTTAATATATCTGTGGCTGTAGTTTCACCCTTGCTTTAAAAAAAATATG
AATGAATTGTTCTTCTTTGAAATGTATTTTCTTAGGTTTACTACCGGATT
AGCTACAACTATGCTTTTGTGGCCAACAATCACTGAGCAAATTCACTTGT
CTCATAATGTGCATAGTGATATCAACTATGAATGTCCTACAGCTAAAACT
GGTCTTCTTGGAGGTGGTGCATTTTTATCACTTGATTCATCTCTATTTTG
GTTGATAACACTTATGTTAGTTGATAATGTTCGTGAGGATTTCTTTGATG
GAGAAGATGGTGATAAAGGTGAATTTGGTAAAGCTTCTTCAAATGCTTAC
AATGTAGATATAGGAGTGAATGGGAGCTTGTGA back to topCoding sequence (CDS) from alignment at Chr_LG10-CM007370.1:14871306..14873138- >rna-TanjilR_19345_La_Tanjil_v1.0 ID=rna-TanjilR_19345_La_Tanjil_v1.0; Name=rna-TanjilR_19345; organism=Lupinus angustifolius; type=CDS; length=603bp; location=Sequence derived from: Chr_LG10-CM007370.1:14871306..14873138- (Lupinus angustifolius ATGGCTCCTACGATTAAACAAATGGCTCTCATTATCTCCTTCTTTGGTTT TGTCTCTTTTATACTTGGTATTCTTGCTGAAAACAAAAAGCCTGTAGCTG GAACCCCAATACCTAATGGGAATGGTGTAACATGCAAGTACCCAACTGAT CCAAGTGTGACATTAGGATATCTTTCTACAATGTTTCTTATTGGATCCAC TGTGGTTGGTTATCTCTCTCTATTCTACCCTTACAAAGGAAAATCAATAT CACAAGGGGTTCTCTTTAAACACACTACTTTTGTGGTGTTCTTTAATGTT GCATTGTTTACTACCGGATTAGCTACAACTATGCTTTTGTGGCCAACAAT CACTGAGCAAATTCACTTGTCTCATAATGTGCATAGTGATATCAACTATG AATGTCCTACAGCTAAAACTGGTCTTCTTGGAGGTGGTGCATTTTTATCA CTTGATTCATCTCTATTTTGGTTGATAACACTTATGTTAGTTGATAATGT TCGTGAGGATTTCTTTGATGGAGAAGATGGTGATAAAGGTGAATTTGGTA AAGCTTCTTCAAATGCTTACAATGTAGATATAGGAGTGAATGGGAGCTTG TGA back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: INTERPRO
Term | Definition |
IPR009606 | DEAL/Modifying_wall_lignin1/2 |
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