rna-TanjilR_19345

Transcript Overview
Namerna-TanjilR_19345
Unique Namerna-TanjilR_19345_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length1833
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG10-CM007370.1supercontigChr_LG10-CM007370.1:14871306..14873138 -Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananR077Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR080Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR091Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR107Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR110Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaR0092Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR0103Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaiR0121Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR0127Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR0138Cicer arietinum ICC 4958 genome v2Cicer arietinum
anccR0143Cajanus cajan Asha genome v1.0Cajanus cajan
ancrR0114Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ancrR0121Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
anpsR0096Pisum sativum Cameor genome v1aPisum sativum
anpvR0103Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR0156Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anvuR0116Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR0124Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anasR0113Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR0131Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anzwsR0108Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
antifR0093Vicia faba cv. Tiffany genome v1.0Vicia faba
antifR0100Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR0095Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
anvfhR0104Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
anvrvR0108Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvrvR0115Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvssR0119Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR0129Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvuaR0106Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvuaR0114Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ancanR0087Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR0099Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
anavjR0122Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0136Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
ancarR0101Cicer arietinum
ancarR0109Cicer arietinum
anccaR0085Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR0095Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR0105Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR0113Vigna umbellata FF25 genome v1.0Vigna umbellata
anvvaR0109Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvvaR0112Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvvaR0119Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvasR0102Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvasR0112Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvasR0115Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0100Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvstR0106Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvstR0109Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anpvfR0099Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anpvfR0149Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anvunR0107Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anvunR0114Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
Vigun08g062200.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Cc_v2.0_06887.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Cr_09680.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
LR48_mrnaVigan07g236600Vigna angularis Jingnong 6 genome v1.1Vigna angularis
PvulFLAVERTChr01.354Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Phvul.001G057300.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
evm.model.Chr08.120Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vigst.03G140600.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Ca_09775.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Psat06G0086000-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
rna-KK1_004971Cajanus cajan Asha genome v1.0Cajanus cajan
rna-XM_014647993.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vigan.03G224100.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
jg35818.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Ca_01825Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Vum_03G01563.1Vigna umbellata FF25 genome v1.0Vigna umbellata
rna-XM_004501200.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Psat6g031560.1Pisum sativum Cameor genome v1aPisum sativum
Ca_14734.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Va07G060260.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Cc_v2.0_11209.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-TanjilR_01221Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_19345gene-TanjilG_19345_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_19345rna-TanjilR_19345_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_19345_La_Tanjil_v1.0rna-TanjilR_19345_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_19345_La_Tanjil_v1.0-CDS-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14873049..14873138rna-TanjilR_19345_La_Tanjil_v1.0-CDS-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14873049..14873138Lupinus angustifoliusCDS
rna-TanjilR_19345_La_Tanjil_v1.0-CDS-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14872268..14872482rna-TanjilR_19345_La_Tanjil_v1.0-CDS-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14872268..14872482Lupinus angustifoliusCDS
rna-TanjilR_19345_La_Tanjil_v1.0-CDS-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14871306..14871603rna-TanjilR_19345_La_Tanjil_v1.0-CDS-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14871306..14871603Lupinus angustifoliusCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_19345_La_Tanjil_v1.0-exon-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14873049..14873138rna-TanjilR_19345_La_Tanjil_v1.0-exon-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14873049..14873138Lupinus angustifoliusexon
rna-TanjilR_19345_La_Tanjil_v1.0-exon-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14872268..14872482rna-TanjilR_19345_La_Tanjil_v1.0-exon-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14872268..14872482Lupinus angustifoliusexon
rna-TanjilR_19345_La_Tanjil_v1.0-exon-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14871306..14871603rna-TanjilR_19345_La_Tanjil_v1.0-exon-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14871306..14871603Lupinus angustifoliusexon


Homology
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_19345 vs.
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009606Modifying wall lignin-1/2PFAMPF06749DUF1218coord: 63..154
e-value: 2.7E-14
score: 53.4

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_19345_La_Tanjil_v1.0 ID=rna-TanjilR_19345_La_Tanjil_v1.0; Name=rna-TanjilR_19345; organism=Lupinus angustifolius; type=mRNA; length=1833bp
ATGGCTCCTACGATTAAACAAATGGCTCTCATTATCTCCTTCTTTGGTTT
TGTCTCTTTTATACTTGGTATTCTTGCTGAAAACAAAAAGGTCATTAATT
ACTTATCCTCTATCATATTGGATTTCAACTCTTACTTTATTTTTAATTTA
TAATCGTTATTTTTATCAATTCATTACAATTTATCCCATCCTCGACTATT
GCACGAGACTTCTAGGTTTGGGAGTATAGACTGACACACAATCGTATCCC
AAAAGCAACAACTAAGAATTTGTTTTCAAGATTAAATCTATAAATTATTG
TGTGACAAGACACCAATGTAATCATTATGCCCAGGGTCAAATTTCAATGT
ATTTGAAAATTGTCATACCTAATTAATCTAGTCTATATCGTTATGGAGAC
TATAGATATCATAGCTGAAACTATGGTTCAACGGTTGATGGCAATAGTGC
ATATAGTATATGAGATGAGCTAATGAATTCATAACAAGTACAAATTTATT
TTATTGTATCCATAATATAAATTGGTGATTGTTGTGTAATAGTTTTAATA
TGTTTTATTTTTTAGGCTTGTTCATTCTATTACTTATATTCGTGTTTTAT
TGCTAATATATATTTTCCTCATACACATGAAATATTTGTTGTTATTGTTG
TTATAGCCTGTAGCTGGAACCCCAATACCTAATGGGAATGGTGTAACATG
CAAGTACCCAACTGATCCAAGTGTGACATTAGGATATCTTTCTACAATGT
TTCTTATTGGATCCACTGTGGTTGGTTATCTCTCTCTATTCTACCCTTAC
AAAGGAAAATCAATATCACAAGGGGTTCTCTTTAAACACACTACTTTTGT
GGTGTTCTTTAATGTTGCATTGTAAGTGCTCACATTTTTCCTTATCCTTA
TATGATTACCATTCTAGCTATTGTACAATATATTTTTCCATTTTTTATTG
TTCATAGAAATGTAATATTTGTCATGATTATCTTAGAGTTGATTCTTGTT
GAATTGTTTTAGATCAAAATTTCTAGTTTTTATATTGCTTTCACATCTAT
GATTCATCCATGTCTCATAATTAGACAGAGTTGACGCTTGTTACTAACTT
ATAATGCATTAGTCTGCATATGAAAGGCTACTTTCAGTTAATGGCATTGT
CGGTGTTATTTTCTTATATATATAAATATATACATTGTTCTAGTTTTCAT
ATCGACAAATGCCGGAACACTATGAACAAATGCCGGAACACTATGTTGGT
ATGCAAGTTCGTTCAAGTGTCTCACATATTTAGGGAAGGGAATGCTTGTA
TAGACAAGTTGGCAAACTTTGGTGTGAATTCTAGAATGGATTATTGGTGG
AATTATCCTCCTTCCTTCTTGTTGCATGATTTTCATAGAAATATGTTGCT
TCTCCCGAACTATAGGTTTAGGGGCTTGTAATAGTTCTTTACTTCGACAT
CGTTAATATATCTGTGGCTGTAGTTTCACCCTTGCTTTAAAAAAAATATG
AATGAATTGTTCTTCTTTGAAATGTATTTTCTTAGGTTTACTACCGGATT
AGCTACAACTATGCTTTTGTGGCCAACAATCACTGAGCAAATTCACTTGT
CTCATAATGTGCATAGTGATATCAACTATGAATGTCCTACAGCTAAAACT
GGTCTTCTTGGAGGTGGTGCATTTTTATCACTTGATTCATCTCTATTTTG
GTTGATAACACTTATGTTAGTTGATAATGTTCGTGAGGATTTCTTTGATG
GAGAAGATGGTGATAAAGGTGAATTTGGTAAAGCTTCTTCAAATGCTTAC
AATGTAGATATAGGAGTGAATGGGAGCTTGTGA
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protein sequence of rna-TanjilR_19345_La_Tanjil_v1.0

>rna-TanjilR_19345_La_Tanjil_v1.0 ID=rna-TanjilR_19345_La_Tanjil_v1.0; Name=rna-TanjilR_19345_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=200bp
MAPTIKQMALIISFFGFVSFILGILAENKKPVAGTPIPNGNGVTCKYPTD
PSVTLGYLSTMFLIGSTVVGYLSLFYPYKGKSISQGVLFKHTTFVVFFNV
ALFTTGLATTMLLWPTITEQIHLSHNVHSDINYECPTAKTGLLGGGAFLS
LDSSLFWLITLMLVDNVREDFFDGEDGDKGEFGKASSNAYNVDIGVNGSL
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mRNA from alignment at Chr_LG10-CM007370.1:14871306..14873138-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_19345_La_Tanjil_v1.0 ID=rna-TanjilR_19345_La_Tanjil_v1.0; Name=rna-TanjilR_19345; organism=Lupinus angustifolius; type=mRNA; length=1833bp; location=Sequence derived from: Chr_LG10-CM007370.1:14871306..14873138- (Lupinus angustifolius
ATGGCTCCTACGATTAAACAAATGGCTCTCATTATCTCCTTCTTTGGTTT
TGTCTCTTTTATACTTGGTATTCTTGCTGAAAACAAAAAGGTCATTAATT
ACTTATCCTCTATCATATTGGATTTCAACTCTTACTTTATTTTTAATTTA
TAATCGTTATTTTTATCAATTCATTACAATTTATCCCATCCTCGACTATT
GCACGAGACTTCTAGGTTTGGGAGTATAGACTGACACACAATCGTATCCC
AAAAGCAACAACTAAGAATTTGTTTTCAAGATTAAATCTATAAATTATTG
TGTGACAAGACACCAATGTAATCATTATGCCCAGGGTCAAATTTCAATGT
ATTTGAAAATTGTCATACCTAATTAATCTAGTCTATATCGTTATGGAGAC
TATAGATATCATAGCTGAAACTATGGTTCAACGGTTGATGGCAATAGTGC
ATATAGTATATGAGATGAGCTAATGAATTCATAACAAGTACAAATTTATT
TTATTGTATCCATAATATAAATTGGTGATTGTTGTGTAATAGTTTTAATA
TGTTTTATTTTTTAGGCTTGTTCATTCTATTACTTATATTCGTGTTTTAT
TGCTAATATATATTTTCCTCATACACATGAAATATTTGTTGTTATTGTTG
TTATAGCCTGTAGCTGGAACCCCAATACCTAATGGGAATGGTGTAACATG
CAAGTACCCAACTGATCCAAGTGTGACATTAGGATATCTTTCTACAATGT
TTCTTATTGGATCCACTGTGGTTGGTTATCTCTCTCTATTCTACCCTTAC
AAAGGAAAATCAATATCACAAGGGGTTCTCTTTAAACACACTACTTTTGT
GGTGTTCTTTAATGTTGCATTGTAAGTGCTCACATTTTTCCTTATCCTTA
TATGATTACCATTCTAGCTATTGTACAATATATTTTTCCATTTTTTATTG
TTCATAGAAATGTAATATTTGTCATGATTATCTTAGAGTTGATTCTTGTT
GAATTGTTTTAGATCAAAATTTCTAGTTTTTATATTGCTTTCACATCTAT
GATTCATCCATGTCTCATAATTAGACAGAGTTGACGCTTGTTACTAACTT
ATAATGCATTAGTCTGCATATGAAAGGCTACTTTCAGTTAATGGCATTGT
CGGTGTTATTTTCTTATATATATAAATATATACATTGTTCTAGTTTTCAT
ATCGACAAATGCCGGAACACTATGAACAAATGCCGGAACACTATGTTGGT
ATGCAAGTTCGTTCAAGTGTCTCACATATTTAGGGAAGGGAATGCTTGTA
TAGACAAGTTGGCAAACTTTGGTGTGAATTCTAGAATGGATTATTGGTGG
AATTATCCTCCTTCCTTCTTGTTGCATGATTTTCATAGAAATATGTTGCT
TCTCCCGAACTATAGGTTTAGGGGCTTGTAATAGTTCTTTACTTCGACAT
CGTTAATATATCTGTGGCTGTAGTTTCACCCTTGCTTTAAAAAAAATATG
AATGAATTGTTCTTCTTTGAAATGTATTTTCTTAGGTTTACTACCGGATT
AGCTACAACTATGCTTTTGTGGCCAACAATCACTGAGCAAATTCACTTGT
CTCATAATGTGCATAGTGATATCAACTATGAATGTCCTACAGCTAAAACT
GGTCTTCTTGGAGGTGGTGCATTTTTATCACTTGATTCATCTCTATTTTG
GTTGATAACACTTATGTTAGTTGATAATGTTCGTGAGGATTTCTTTGATG
GAGAAGATGGTGATAAAGGTGAATTTGGTAAAGCTTCTTCAAATGCTTAC
AATGTAGATATAGGAGTGAATGGGAGCTTGTGA
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Coding sequence (CDS) from alignment at Chr_LG10-CM007370.1:14871306..14873138-

>rna-TanjilR_19345_La_Tanjil_v1.0 ID=rna-TanjilR_19345_La_Tanjil_v1.0; Name=rna-TanjilR_19345; organism=Lupinus angustifolius; type=CDS; length=603bp; location=Sequence derived from: Chr_LG10-CM007370.1:14871306..14873138- (Lupinus angustifolius
ATGGCTCCTACGATTAAACAAATGGCTCTCATTATCTCCTTCTTTGGTTT
TGTCTCTTTTATACTTGGTATTCTTGCTGAAAACAAAAAGCCTGTAGCTG
GAACCCCAATACCTAATGGGAATGGTGTAACATGCAAGTACCCAACTGAT
CCAAGTGTGACATTAGGATATCTTTCTACAATGTTTCTTATTGGATCCAC
TGTGGTTGGTTATCTCTCTCTATTCTACCCTTACAAAGGAAAATCAATAT
CACAAGGGGTTCTCTTTAAACACACTACTTTTGTGGTGTTCTTTAATGTT
GCATTGTTTACTACCGGATTAGCTACAACTATGCTTTTGTGGCCAACAAT
CACTGAGCAAATTCACTTGTCTCATAATGTGCATAGTGATATCAACTATG
AATGTCCTACAGCTAAAACTGGTCTTCTTGGAGGTGGTGCATTTTTATCA
CTTGATTCATCTCTATTTTGGTTGATAACACTTATGTTAGTTGATAATGT
TCGTGAGGATTTCTTTGATGGAGAAGATGGTGATAAAGGTGAATTTGGTA
AAGCTTCTTCAAATGCTTACAATGTAGATATAGGAGTGAATGGGAGCTTG
TGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR009606DEAL/Modifying_wall_lignin1/2