rna-TanjilR_29143
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_29143 vs. DB:Swiss
Match: BH147_ARATH (Transcription factor bHLH147 OS=Arabidopsis thaliana OX=3702 GN=BHLH147 PE=1 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 4.353e-48 Identity = 91/165 (55.15%), Postives = 116/165 (70.30%), Query Frame = 1
Query: 115 SPTKWKSQEQQQIYSSKLHKAL------------TTSSPPRGGKAVREAADRVLAATAKGRTRWSRAILTNRLKLKFRKQRNKKQRM-----IAAATGISRCKKPRVSVLKLKGKGLPSMQRKVRFLGGLVPGCRKEPLPVILEETIDYIPALEMQVRAMTALFN 558
S KW+S++QQQIYS+KL AL ++SS PRGG+AVRE ADR LA A+G+T WSRAIL+ +KLKFRK +K+QR+ TG R KK R +VL+LK KGLP++QRKV+ L LVPGCRK+ LPV+LEET DYI A+EMQ+R MTA+ +
Sbjct: 46 SLEKWRSEKQQQIYSTKLVHALRELRISQQPSSSSSSSIPRGGRAVREVADRALAVAARGKTLWSRAILSKAVKLKFRK--HKRQRISNPTTTTLTTGSIRSKKQRATVLRLKAKGLPAVQRKVKVLSRLVPGCRKQSLPVVLEETTDYIAAMEMQIRTMTAILS 208
BLAST of rna-TanjilR_29143 vs. DB:Swiss
Match: BH148_ARATH (Transcription factor bHLH148 OS=Arabidopsis thaliana OX=3702 GN=BHLH148 PE=1 SV=1) HSP 1 Score: 146.747 bits (369), Expect = 6.163e-43 Identity = 86/165 (52.12%), Postives = 108/165 (65.45%), Query Frame = 1
Query: 124 KWKSQEQQQIYSSKLHKAL------------TTSSPPRGGKAVREAADRVLAATAKGRTRWSRAILTNRLKLKFRKQRNKKQRM-IAAATGISRCKKPRVS-----VLKLKGKGLPSMQRKVRFLGGLVPGCRKEPLPVILEETIDYIPALEMQVRAMTALFNLL 564
+W+S++QQ+IYS+KL +AL ++ + + GKAVREAADR LA +A+GRT WSRAIL NR+KLKFRKQR + M I A T + R VL+L K +P + RKVR LG LVPGC K+ +PVILEE DYI ALEMQVRAM +L LL
Sbjct: 47 RWRSEKQQRIYSAKLFQALQQVRLNSSASTSSSPTAQKRGKAVREAADRALAVSARGRTLWSRAILANRIKLKFRKQRRPRATMAIPAMTTVVSSSSNRSRKRRVSVLRLNKKSIPDVNRKVRVLGRLVPGCGKQSVPVILEEATDYIQALEMQVRAMNSLVQLL 211
BLAST of rna-TanjilR_29143 vs. DB:Swiss
Match: BH150_ARATH (Transcription factor bHLH150 OS=Arabidopsis thaliana OX=3702 GN=BHLH150 PE=1 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 4.043e-33 Identity = 70/147 (47.62%), Postives = 87/147 (59.18%), Query Frame = 1
Query: 124 KWKSQEQQQIYSSKLHKALTTSSPPRGGKAVREAADRVLAATAKGRTRWSRAILTNRLKLKFRKQRNKKQRMIAAATGISRCKKPRVSVLKLKGKGLPSMQRKVRFLGGLVPGCRKEPLPVILEETIDYIPALEMQVRAMTALFNLL 564
+W++ Q++YS KL+ AL S R VR+ AD+VLA TA+G TRWSRAIL +R R++RN K AA R L G +VR LGGLVPGCR+ LP +L+ET DYI ALEMQVRAMTAL +L
Sbjct: 62 RWRATTAQKVYSLKLYDALQRS---RRSATVRDTADKVLATTARGATRWSRAILVSRFGTSLRRRRNTKPASALAAAIRGSGGSGRRRKLSAVGN-------RVRVLGGLVPGCRRTALPELLDETADYIAALEMQVRAMTALSKIL 198
BLAST of rna-TanjilR_29143 vs. DB:Swiss
Match: BH149_ARATH (Transcription factor bHLH149 OS=Arabidopsis thaliana OX=3702 GN=BHLH149 PE=1 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.352e-28 Identity = 69/168 (41.07%), Postives = 101/168 (60.12%), Query Frame = 1
Query: 82 SQLRHQQQHSNSPTKWKSQEQQQIYSSKLHKAL--------TTSSPPR------GGKAVREAADRVLAATAKGRTRWSRAILTNRLKLKFRKQRNKKQRMIAAATGISRCKKPRVSVLKLKGKGLPSMQRKVRFLGGLVPGCRKEPLPVILEETIDYIPALEMQVRAM 543
+++ ++ + S +WK+ QQIY+ KL +AL TTS+ + +R+ ADRVLAA+A+G TRWSRAIL +R++ K KK R +TG + +K ++K LP+++RK++ LG LVPGCRK +P +L+E DYI ALEMQVRAM
Sbjct: 29 AEIEARRVNEESLKRWKTNRVQQIYACKLVEALRRVRQRSSTTSNNETDKLVSGAAREIRDTADRVLAASARGTTRWSRAILASRVRAKL-----KKHRKAKKSTGNCKSRKGLTETNRIK---LPAVERKLKILGRLVPGCRKVSVPNLLDEATDYIAALEMQVRAM 188 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_29143 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 4
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_29143_La_Tanjil_v1.0 ID=rna-TanjilR_29143_La_Tanjil_v1.0; Name=rna-TanjilR_29143; organism=Lupinus angustifolius; type=mRNA; length=615bpback to top protein sequence of rna-TanjilR_29143_La_Tanjil_v1.0 >rna-TanjilR_29143_La_Tanjil_v1.0 ID=rna-TanjilR_29143_La_Tanjil_v1.0; Name=rna-TanjilR_29143_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=204bpback to top mRNA from alignment at Chr_LG12-CM007372.1:15984838..15985452+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_29143_La_Tanjil_v1.0 ID=rna-TanjilR_29143_La_Tanjil_v1.0; Name=rna-TanjilR_29143; organism=Lupinus angustifolius; type=mRNA; length=615bp; location=Sequence derived from: Chr_LG12-CM007372.1:15984838..15985452+ (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG12-CM007372.1:15984838..15985452+ >rna-TanjilR_29143_La_Tanjil_v1.0 ID=rna-TanjilR_29143_La_Tanjil_v1.0; Name=rna-TanjilR_29143; organism=Lupinus angustifolius; type=CDS; length=615bp; location=Sequence derived from: Chr_LG12-CM007372.1:15984838..15985452+ (Lupinus angustifoliusback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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