rna-TanjilR_26408

Transcript Overview
Namerna-TanjilR_26408
Unique Namerna-TanjilR_26408_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length1459
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG12-CM007372.1supercontigChr_LG12-CM007372.1:18888621..18890079 -Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananL016Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR207Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR218Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiR0243Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaR0215Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaiR0291Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaR0258Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
anccR0262Cajanus cajan Asha genome v1.0Cajanus cajan
anccR0283Cajanus cajan Asha genome v1.0Cajanus cajan
ancrR0246Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ancrR0304Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
anpsR0187Pisum sativum Cameor genome v1aPisum sativum
anpsR0206Pisum sativum Cameor genome v1aPisum sativum
anpsR0207Pisum sativum Cameor genome v1aPisum sativum
anpvR0272Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR0282Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anvuR0223Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR0231Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anasR0230Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR0240Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR0243Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anzwsR0209Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anzwsR0226Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
antifR0213Vicia faba cv. Tiffany genome v1.0Vicia faba
antifR0238Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR0215Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
antifR0245Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR0240Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
anvfhR0247Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
anvrvR0213Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvrvR0252Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvssR0232Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvuaR0202Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvuaR0215Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvssR0280Vicia sativa cv. Studenica genome v1.0Vicia sativa
ancanR0193Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR0235Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
anavjR0222Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0238Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
ancarR0210Cicer arietinum
ancarR0260Cicer arietinum
anccaR0201Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR0222Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR0231Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR0277Vigna umbellata FF25 genome v1.0Vigna umbellata
anvvaR0229Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvvaR0249Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvasR0242Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0233Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0280Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0274Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anpvfR0269Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anpvfR0278Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anvunR0209Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anvunR0216Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
PvulFLAVERTChr03.1000486Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
rna-XM_014653847.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
evm.model.Chr03.1062Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Cr_22205.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
XM_058876669.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Vfaba.Hedin2.R1.4g231840.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
LR48_mrnaVigan01g334700Vigna angularis Jingnong 6 genome v1.1Vigna angularis
rna-KK1_004551Cajanus cajan Asha genome v1.0Cajanus cajan
Vigst.01G384900.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Cc_v2.0_28093.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Vigun03g445100.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vigan.01G546700.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Va01G100890.2Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Ca_03383Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Vigun03g445100.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Psat04G0016300-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Vum_01G04160.1Vigna umbellata FF25 genome v1.0Vigna umbellata
rna-XM_004507622.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Vfaba.Tiffany.R1.4g177880.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Psat4g006040.1Pisum sativum Cameor genome v1aPisum sativum
jg20841.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Phvul.003G080300.2Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Ca_22049.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_26408gene-TanjilG_26408_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_26408rna-TanjilR_26408_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_26408_La_Tanjil_v1.0rna-TanjilR_26408_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_26408_La_Tanjil_v1.0-CDS-Chr_LG12-CM007372.1_La_Tanjil_v1.0-1579734366:18889822..18890079rna-TanjilR_26408_La_Tanjil_v1.0-CDS-Chr_LG12-CM007372.1_La_Tanjil_v1.0-1579734366:18889822..18890079Lupinus angustifoliusCDS
rna-TanjilR_26408_La_Tanjil_v1.0-CDS-Chr_LG12-CM007372.1_La_Tanjil_v1.0-1579734366:18889614..18889733rna-TanjilR_26408_La_Tanjil_v1.0-CDS-Chr_LG12-CM007372.1_La_Tanjil_v1.0-1579734366:18889614..18889733Lupinus angustifoliusCDS
rna-TanjilR_26408_La_Tanjil_v1.0-CDS-Chr_LG12-CM007372.1_La_Tanjil_v1.0-1579734366:18889387..18889545rna-TanjilR_26408_La_Tanjil_v1.0-CDS-Chr_LG12-CM007372.1_La_Tanjil_v1.0-1579734366:18889387..18889545Lupinus angustifoliusCDS
rna-TanjilR_26408_La_Tanjil_v1.0-CDS-Chr_LG12-CM007372.1_La_Tanjil_v1.0-1579734366:18889092..18889264rna-TanjilR_26408_La_Tanjil_v1.0-CDS-Chr_LG12-CM007372.1_La_Tanjil_v1.0-1579734366:18889092..18889264Lupinus angustifoliusCDS
rna-TanjilR_26408_La_Tanjil_v1.0-CDS-Chr_LG12-CM007372.1_La_Tanjil_v1.0-1579734366:18888880..18888985rna-TanjilR_26408_La_Tanjil_v1.0-CDS-Chr_LG12-CM007372.1_La_Tanjil_v1.0-1579734366:18888880..18888985Lupinus angustifoliusCDS
rna-TanjilR_26408_La_Tanjil_v1.0-CDS-Chr_LG12-CM007372.1_La_Tanjil_v1.0-1579734366:18888621..18888650rna-TanjilR_26408_La_Tanjil_v1.0-CDS-Chr_LG12-CM007372.1_La_Tanjil_v1.0-1579734366:18888621..18888650Lupinus angustifoliusCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_26408_La_Tanjil_v1.0-exon-Chr_LG12-CM007372.1_La_Tanjil_v1.0-1579734366:18889822..18890079rna-TanjilR_26408_La_Tanjil_v1.0-exon-Chr_LG12-CM007372.1_La_Tanjil_v1.0-1579734366:18889822..18890079Lupinus angustifoliusexon
rna-TanjilR_26408_La_Tanjil_v1.0-exon-Chr_LG12-CM007372.1_La_Tanjil_v1.0-1579734366:18889614..18889733rna-TanjilR_26408_La_Tanjil_v1.0-exon-Chr_LG12-CM007372.1_La_Tanjil_v1.0-1579734366:18889614..18889733Lupinus angustifoliusexon
rna-TanjilR_26408_La_Tanjil_v1.0-exon-Chr_LG12-CM007372.1_La_Tanjil_v1.0-1579734366:18889387..18889545rna-TanjilR_26408_La_Tanjil_v1.0-exon-Chr_LG12-CM007372.1_La_Tanjil_v1.0-1579734366:18889387..18889545Lupinus angustifoliusexon
rna-TanjilR_26408_La_Tanjil_v1.0-exon-Chr_LG12-CM007372.1_La_Tanjil_v1.0-1579734366:18889092..18889264rna-TanjilR_26408_La_Tanjil_v1.0-exon-Chr_LG12-CM007372.1_La_Tanjil_v1.0-1579734366:18889092..18889264Lupinus angustifoliusexon
rna-TanjilR_26408_La_Tanjil_v1.0-exon-Chr_LG12-CM007372.1_La_Tanjil_v1.0-1579734366:18888880..18888985rna-TanjilR_26408_La_Tanjil_v1.0-exon-Chr_LG12-CM007372.1_La_Tanjil_v1.0-1579734366:18888880..18888985Lupinus angustifoliusexon
rna-TanjilR_26408_La_Tanjil_v1.0-exon-Chr_LG12-CM007372.1_La_Tanjil_v1.0-1579734366:18888621..18888650rna-TanjilR_26408_La_Tanjil_v1.0-exon-Chr_LG12-CM007372.1_La_Tanjil_v1.0-1579734366:18888621..18888650Lupinus angustifoliusexon


Homology
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_26408 vs.
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_26408_La_Tanjil_v1.0 ID=rna-TanjilR_26408_La_Tanjil_v1.0; Name=rna-TanjilR_26408; organism=Lupinus angustifolius; type=mRNA; length=1459bp
ATGCTGATGGTGTATGCTCCAGGAGCATATCAACATTCAGCTTCTGCACA
ACAATCTTATCCATACAAGACCATTAATGTTATTTTCATAAATTCTAATC
CTGCTTTTCTTAAACCCAATTGGTGGAGTCCTTGTAATAGTAATAGTACT
AGTAGTAGTAACATATTTCACAGTTCCTCCTTCTCCGGGAAATGTGTTAA
GCCACACAAGAACCTTCACCTTTTATTCCATCATGTAGCTACTACACACA
AATGCCTGGTAAGCCTGCAACCTCCTCTGCTTTCTGACATTATTTATTAT
ATGTTCTTCTGGTCATTGATATGTTTTTTCAACATCTAATTTGCAGTGTG
GATTACATGATTCCATTTCATTAGATGATGAGTTTAGATCATCACGCAAT
ATAGCAATCACTTTGTTTAGGCGATACAGAAATTTCATTGATCGCGGTGG
AGCTGATCATCTAAAAGTATGTCCATTAGCCTACTGTACTTGTTATTTGT
TTGAGATAATCCATTTGTTTCTTTTCACTCTCAGGAGTTCATCGCTGCTG
GCGTAAATGCATATGCACTAGGATGCACTGATGAAGGGTTAAGGAAAGAA
CTTACTGATATGAAGGACTCTGGTTTTGAAATTGAAGCAATGCAAAATTA
TGGTGGAAGCACAAGCTTGAAATCTAAGATCATCTCAGAGGAGGTCACTT
CTAATTCATAGTCGTCAATCTTGATCATCACAACCATTGTTTTAATGGTA
TTTTGTGCAACCGTGAATTCTGCTAGATCTTAGTTGTCTTATTCTTCAAG
TTATGTGTCATGCAGGTTGATGAATGCATTCTTTGGTTAAGCATCATATT
CATCACCATCTTATGTACACCCCAACCAACTATTGTTAGATGGTCATCCA
CACCCTCAGTGTCAGATGAAGTGAAACTTCAGTGGGAAGGCTTTTGTGCT
CTTATAGCAAATGCATATTTTATGAAGGGGATGGCTTGGTAAGATGCATT
GCTATCGTATTGTTGTTGATACCTGTTACCTTCTTAAATGTCAGCAAAAT
CATAATGAATGTTCATGGTGCTGTTTACTATGTGTTTATTGAAGGCTTCC
TGTAAAGACTCTTCAACTTGAACAAACAGCTGTGATGGGTCAAGCTGAGA
AGCCATCAGTTGTTGCTAGCCGAATGCGATTAGTCTTTAGCACACTCGAG
GTTAGCATTTTACAGTTTGCGACCTATCTCTGTAGAAATTAATGCATAGG
TTAGAAATTGAGGAAGGAACATGGATCTCAGTAGTATCTCACATTAGATT
GATGATCTCACATCAATTCATTGCCTGGATTGTTAACTTGCTTAAAAATA
GTAATTGTAGAACAGAAGATCACAGGTATGTTCTAGAGACTATTATTTGT
ATTACAAGTCATGCTATTCACTGTTGCAGGTAGTGAGTCCACAATGGCCA
AGAGTATAG
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protein sequence of rna-TanjilR_26408_La_Tanjil_v1.0

>rna-TanjilR_26408_La_Tanjil_v1.0 ID=rna-TanjilR_26408_La_Tanjil_v1.0; Name=rna-TanjilR_26408_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=281bp
MLMVYAPGAYQHSASAQQSYPYKTINVIFINSNPAFLKPNWWSPCNSNST
SSSNIFHSSSFSGKCVKPHKNLHLLFHHVATTHKCLCGLHDSISLDDEFR
SSRNIAITLFRRYRNFIDRGGADHLKEFIAAGVNAYALGCTDEGLRKELT
DMKDSGFEIEAMQNYGGSTSLKSKIISEEVDECILWLSIIFITILCTPQP
TIVRWSSTPSVSDEVKLQWEGFCALIANAYFMKGMAWLPVKTLQLEQTAV
MGQAEKPSVVASRMRLVFSTLEVVSPQWPRV
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mRNA from alignment at Chr_LG12-CM007372.1:18888621..18890079-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_26408_La_Tanjil_v1.0 ID=rna-TanjilR_26408_La_Tanjil_v1.0; Name=rna-TanjilR_26408; organism=Lupinus angustifolius; type=mRNA; length=1459bp; location=Sequence derived from: Chr_LG12-CM007372.1:18888621..18890079- (Lupinus angustifolius
ATGCTGATGGTGTATGCTCCAGGAGCATATCAACATTCAGCTTCTGCACA
ACAATCTTATCCATACAAGACCATTAATGTTATTTTCATAAATTCTAATC
CTGCTTTTCTTAAACCCAATTGGTGGAGTCCTTGTAATAGTAATAGTACT
AGTAGTAGTAACATATTTCACAGTTCCTCCTTCTCCGGGAAATGTGTTAA
GCCACACAAGAACCTTCACCTTTTATTCCATCATGTAGCTACTACACACA
AATGCCTGGTAAGCCTGCAACCTCCTCTGCTTTCTGACATTATTTATTAT
ATGTTCTTCTGGTCATTGATATGTTTTTTCAACATCTAATTTGCAGTGTG
GATTACATGATTCCATTTCATTAGATGATGAGTTTAGATCATCACGCAAT
ATAGCAATCACTTTGTTTAGGCGATACAGAAATTTCATTGATCGCGGTGG
AGCTGATCATCTAAAAGTATGTCCATTAGCCTACTGTACTTGTTATTTGT
TTGAGATAATCCATTTGTTTCTTTTCACTCTCAGGAGTTCATCGCTGCTG
GCGTAAATGCATATGCACTAGGATGCACTGATGAAGGGTTAAGGAAAGAA
CTTACTGATATGAAGGACTCTGGTTTTGAAATTGAAGCAATGCAAAATTA
TGGTGGAAGCACAAGCTTGAAATCTAAGATCATCTCAGAGGAGGTCACTT
CTAATTCATAGTCGTCAATCTTGATCATCACAACCATTGTTTTAATGGTA
TTTTGTGCAACCGTGAATTCTGCTAGATCTTAGTTGTCTTATTCTTCAAG
TTATGTGTCATGCAGGTTGATGAATGCATTCTTTGGTTAAGCATCATATT
CATCACCATCTTATGTACACCCCAACCAACTATTGTTAGATGGTCATCCA
CACCCTCAGTGTCAGATGAAGTGAAACTTCAGTGGGAAGGCTTTTGTGCT
CTTATAGCAAATGCATATTTTATGAAGGGGATGGCTTGGTAAGATGCATT
GCTATCGTATTGTTGTTGATACCTGTTACCTTCTTAAATGTCAGCAAAAT
CATAATGAATGTTCATGGTGCTGTTTACTATGTGTTTATTGAAGGCTTCC
TGTAAAGACTCTTCAACTTGAACAAACAGCTGTGATGGGTCAAGCTGAGA
AGCCATCAGTTGTTGCTAGCCGAATGCGATTAGTCTTTAGCACACTCGAG
GTTAGCATTTTACAGTTTGCGACCTATCTCTGTAGAAATTAATGCATAGG
TTAGAAATTGAGGAAGGAACATGGATCTCAGTAGTATCTCACATTAGATT
GATGATCTCACATCAATTCATTGCCTGGATTGTTAACTTGCTTAAAAATA
GTAATTGTAGAACAGAAGATCACAGGTATGTTCTAGAGACTATTATTTGT
ATTACAAGTCATGCTATTCACTGTTGCAGGTAGTGAGTCCACAATGGCCA
AGAGTATAG
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Coding sequence (CDS) from alignment at Chr_LG12-CM007372.1:18888621..18890079-

>rna-TanjilR_26408_La_Tanjil_v1.0 ID=rna-TanjilR_26408_La_Tanjil_v1.0; Name=rna-TanjilR_26408; organism=Lupinus angustifolius; type=CDS; length=846bp; location=Sequence derived from: Chr_LG12-CM007372.1:18888621..18890079- (Lupinus angustifolius
ATGCTGATGGTGTATGCTCCAGGAGCATATCAACATTCAGCTTCTGCACA
ACAATCTTATCCATACAAGACCATTAATGTTATTTTCATAAATTCTAATC
CTGCTTTTCTTAAACCCAATTGGTGGAGTCCTTGTAATAGTAATAGTACT
AGTAGTAGTAACATATTTCACAGTTCCTCCTTCTCCGGGAAATGTGTTAA
GCCACACAAGAACCTTCACCTTTTATTCCATCATGTAGCTACTACACACA
AATGCCTGTGTGGATTACATGATTCCATTTCATTAGATGATGAGTTTAGA
TCATCACGCAATATAGCAATCACTTTGTTTAGGCGATACAGAAATTTCAT
TGATCGCGGTGGAGCTGATCATCTAAAAGAGTTCATCGCTGCTGGCGTAA
ATGCATATGCACTAGGATGCACTGATGAAGGGTTAAGGAAAGAACTTACT
GATATGAAGGACTCTGGTTTTGAAATTGAAGCAATGCAAAATTATGGTGG
AAGCACAAGCTTGAAATCTAAGATCATCTCAGAGGAGGTTGATGAATGCA
TTCTTTGGTTAAGCATCATATTCATCACCATCTTATGTACACCCCAACCA
ACTATTGTTAGATGGTCATCCACACCCTCAGTGTCAGATGAAGTGAAACT
TCAGTGGGAAGGCTTTTGTGCTCTTATAGCAAATGCATATTTTATGAAGG
GGATGGCTTGGCTTCCTGTAAAGACTCTTCAACTTGAACAAACAGCTGTG
ATGGGTCAAGCTGAGAAGCCATCAGTTGTTGCTAGCCGAATGCGATTAGT
CTTTAGCACACTCGAGGTAGTGAGTCCACAATGGCCAAGAGTATAG
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