rna-TanjilR_17331
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_17331 vs. DB:Swiss
Match: AX6B_SOYBN (Auxin-induced protein 6B OS=Glycine max OX=3847 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 4.992e-16 Identity = 36/80 (45.00%), Postives = 50/80 (62.50%), Query Frame = 1 Query: 79 KARVTATRAPS---EVPAGYIAVCVGPTMRRFIIRATYLNHPIFVKLLEEVEEEYGFCN-NGPLAIPCDEEYFRELLRVM 306 KA +A +A S +V GY+AV VG MRRF+I +YLN P F LL + EEE+G+ + NG L IPC E+ F+ + + Sbjct: 10 KASFSANQASSKAVDVEKGYLAVYVGEKMRRFVIPVSYLNKPSFQDLLSQAEEEFGYHHPNGGLTIPCSEDVFQHITSFL 89
BLAST of rna-TanjilR_17331 vs. DB:Swiss
Match: AX10A_SOYBN (Auxin-induced protein X10A OS=Glycine max OX=3847 PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 1.294e-14 Identity = 35/73 (47.95%), Postives = 45/73 (61.64%), Query Frame = 1 Query: 79 KARVTATRAPS---EVPAGYIAVCVGPTMRRFIIRATYLNHPIFVKLLEEVEEEYGFCN-NGPLAIPCDEEYF 285 K + A +A S EVP GY+ V VG MRRF+I +YLN P F LL + EEE+G+ + G L IPC E+ F Sbjct: 10 KTSIAANQASSKSVEVPKGYLVVYVGDKMRRFLIPVSYLNQPSFQDLLNQAEEEFGYDHPMGGLTIPCKEDEF 82
BLAST of rna-TanjilR_17331 vs. DB:Swiss
Match: ARG7_VIGRR (Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata OX=3916 GN=ARG7 PE=2 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 1.849e-14 Identity = 31/78 (39.74%), Postives = 48/78 (61.54%), Query Frame = 1 Query: 79 KARVTATRAPSEVPAGYIAVCVGPTMRRFIIRATYLNHPIFVKLLEEVEEEYGFCN-NGPLAIPCDEEYFRELLRVMA 309 AR A+ + P GY+AV VG M+RF+I ++LN P+F LL + EEE+G+ + G L IPC E+ F+ + ++ Sbjct: 13 SARNEASSKVLDAPKGYLAVYVGENMKRFVIPVSHLNQPLFQDLLSQAEEEFGYDHPMGGLTIPCSEDLFQHITSCLS 90
BLAST of rna-TanjilR_17331 vs. DB:Swiss
Match: SAU71_ARATH (Auxin-responsive protein SAUR71 OS=Arabidopsis thaliana OX=3702 GN=SAUR71 PE=2 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 3.441e-14 Identity = 30/74 (40.54%), Postives = 42/74 (56.76%), Query Frame = 1 Query: 76 NKARVTATRAPSEVPAGYIAVCVGPTMRRFIIRATYLNHPIFVKLLEEVEEEYGFCNNGPLAIPCDEEYFRELL 297 + R + S VP G++ V VG M RF++ A LNHP+FV LL++ +EYG+ G L IPC F +L Sbjct: 25 QRGRTKKEKHKSWVPEGHVPVYVGHEMERFVVNAELLNHPVFVALLKQSAQEYGYEQQGVLRIPCHVLVFERIL 98
BLAST of rna-TanjilR_17331 vs. DB:Swiss
Match: SAU50_ARATH (Auxin-responsive protein SAUR50 OS=Arabidopsis thaliana OX=3702 GN=SAUR50 PE=1 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 6.583e-14 Identity = 35/97 (36.08%), Postives = 52/97 (53.61%), Query Frame = 1 Query: 19 NSSKIRRIVRLRQMLFRW-----RNKARVTATRAPSEVPAGYIAVCVGPTMRRFIIRATYLNHPIFVKLLEEVEEEYGFCNNGPLAIPCDEEYFREL 294 +SK+ + L+Q+L R +N P +VP G+ V VG R+I+ ++L HP F LL+ EEE+GF ++ L IPCDE F+ L Sbjct: 6 KTSKLTQTAMLKQILKRCSSLGKKNGGGYDEDCLPLDVPKGHFPVYVGENRSRYIVPISFLTHPEFQSLLQRAEEEFGFDHDMGLTIPCDELVFQTL 102
BLAST of rna-TanjilR_17331 vs. DB:Swiss
Match: A10A5_SOYBN (Auxin-induced protein 10A5 OS=Glycine max OX=3847 PE=2 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 1.012e-13 Identity = 43/92 (46.74%), Postives = 52/92 (56.52%), Query Frame = 1 Query: 58 MLFRWRNKARVTA---TRAPS---EVPAGYIAVCVGPTMRRFIIRATYLNHPIFVKLLEEVEEEYGFCN-NGPLAIPCDEEYFRELLRVMAQ 312 M FR R T+ T+A S +VP GY AV VG MRRF I +YLN P F +LL + EEE+G+ + G L IPC EE E L V A Sbjct: 1 MGFRIAGIVRRTSFYTTQAASKRVDVPKGYAAVYVGDKMRRFTIPVSYLNEPSFQELLSQAEEEFGYDHPMGGLTIPCKEE---EFLNVTAH 89
BLAST of rna-TanjilR_17331 vs. DB:Swiss
Match: SAU10_ARATH (Protein SMALL AUXIN UP-REGULATED RNA 10 OS=Arabidopsis thaliana OX=3702 GN=SAUR10 PE=2 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 1.060e-13 Identity = 34/101 (33.66%), Postives = 57/101 (56.44%), Query Frame = 1 Query: 10 STGNSSKIRRIVRLRQMLFRWRNKARVTATRA---PSEVPAGYIAVCVGPTMRRFIIRATYLNHPIFVKLLEEVEEEYGFCNNGPLAIPCDEEYFRELLRV 303 ++ ++ I++IV+ L + +N + P +VP G+ V VGP R+I+ ++L+H F LL EEE+GF ++ L IPCDE +FR L+ + Sbjct: 10 TSSQAASIKQIVKRCSSLRKMKNVNGCYYNQEDDLPQDVPKGHFPVYVGPNRSRYIVPISWLHHSEFQTLLRLAEEEFGFDHDMGLTIPCDEVFFRSLISM 110
BLAST of rna-TanjilR_17331 vs. DB:Swiss
Match: SAU41_ARATH (Auxin-responsive protein SAUR41 OS=Arabidopsis thaliana OX=3702 GN=SAUR41 PE=2 SV=1) HSP 1 Score: 65.0846 bits (157), Expect = 4.831e-13 Identity = 35/90 (38.89%), Postives = 48/90 (53.33%), Query Frame = 1 Query: 115 VPAGYIAVCVGPTMRRFIIRATYLNHPIFVKLLEEVEEEYGFCNNGPLAIPCDEEYFRELLRVMAQPKCFNTIEDFRNRESWPLLREELI 384 VPAG++ V VG M RF++ A +NHPIFV LL +EYG+ G L IPC F ++ + + F D N + L +ELI Sbjct: 54 VPAGHVPVYVGEEMERFVVSAELMNHPIFVGLLNRSAQEYGYAQKGVLHIPCHVIVFERVVETL-RLGGFEGSGDLENLVASLLSGDELI 142
BLAST of rna-TanjilR_17331 vs. DB:Swiss
Match: SAU40_ARATH (Auxin-responsive protein SAUR40 OS=Arabidopsis thaliana OX=3702 GN=SAUR40 PE=2 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 6.375e-13 Identity = 29/76 (38.16%), Postives = 43/76 (56.58%), Query Frame = 1 Query: 109 SEVPAGYIAVCVGPTMRRFIIRATYLNHPIFVKLLEEVEEEYGFCNNGPLAIPCDEEYFRELLRVMAQPKCFNTIE 336 S VP+G++ V VG RF++ A LNHP+FV LL +EYG+ G L IPC+ F +++ + +T E Sbjct: 46 SSVPSGHVPVNVGEDKERFVVSAELLNHPVFVGLLNRSAQEYGYTQKGVLHIPCNVFVFEQVVESLRSGIADDTSE 121
BLAST of rna-TanjilR_17331 vs. DB:Swiss
Match: AXX15_SOYBN (Auxin-induced protein X15 OS=Glycine max OX=3847 PE=2 SV=1) HSP 1 Score: 62.7734 bits (151), Expect = 6.884e-13 Identity = 29/62 (46.77%), Postives = 41/62 (66.13%), Query Frame = 1 Query: 112 EVPAGYIAVCVGPTMRRFIIRATYLNHPIFVKLLEEVEEEYGFCNN-GPLAIPCDEEYFREL 294 + P GY+AV VG M+RF+I +Y+N P F LL + EEE+G+ + G L IPC EE F+ + Sbjct: 16 DAPKGYLAVYVGEKMKRFVIPVSYMNQPSFQDLLTQAEEEFGYDHPMGGLTIPCSEEVFQRI 77 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_17331 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_17331_La_Tanjil_v1.0 ID=rna-TanjilR_17331_La_Tanjil_v1.0; Name=rna-TanjilR_17331; organism=Lupinus angustifolius; type=mRNA; length=390bpback to top protein sequence of rna-TanjilR_17331_La_Tanjil_v1.0 >rna-TanjilR_17331_La_Tanjil_v1.0 ID=rna-TanjilR_17331_La_Tanjil_v1.0; Name=rna-TanjilR_17331_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=129bpback to top mRNA from alignment at Chr_LG13-CM007373.1:1219922..1220311- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_17331_La_Tanjil_v1.0 ID=rna-TanjilR_17331_La_Tanjil_v1.0; Name=rna-TanjilR_17331; organism=Lupinus angustifolius; type=mRNA; length=390bp; location=Sequence derived from: Chr_LG13-CM007373.1:1219922..1220311- (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG13-CM007373.1:1219922..1220311- >rna-TanjilR_17331_La_Tanjil_v1.0 ID=rna-TanjilR_17331_La_Tanjil_v1.0; Name=rna-TanjilR_17331; organism=Lupinus angustifolius; type=CDS; length=390bp; location=Sequence derived from: Chr_LG13-CM007373.1:1219922..1220311- (Lupinus angustifoliusback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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