rna-TanjilR_17303

Transcript Overview
Namerna-TanjilR_17303
Unique Namerna-TanjilR_17303_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length354
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG13-CM007373.1supercontigChr_LG13-CM007373.1:1421138..1421491 +Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananL072Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR227Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR233Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR239Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR240Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR254Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiR0331Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR0342Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR0343Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaR0290Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR0302Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR0317Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
anccR0349Cajanus cajan Asha genome v1.0Cajanus cajan
anccR0360Cajanus cajan Asha genome v1.0Cajanus cajan
anccR0371Cajanus cajan Asha genome v1.0Cajanus cajan
ancrR0335Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ancrR0337Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ancrR0367Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
anpsR0254Pisum sativum Cameor genome v1aPisum sativum
anpsR0264Pisum sativum Cameor genome v1aPisum sativum
anpsR0267Pisum sativum Cameor genome v1aPisum sativum
anpvR0315Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR0358Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anvuR0263Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR0301Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anasR0301Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR0307Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR0341Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anzwsR0279Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anzwsR0292Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
antifR0273Vicia faba cv. Tiffany genome v1.0Vicia faba
antifR0298Vicia faba cv. Tiffany genome v1.0Vicia faba
antifR0307Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR0275Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
anvfhR0300Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
anvfhR0308Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
anvrvR0271Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvrvR0294Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvrvR0299Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvuaR0247Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvuaR0280Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvssR0329Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR0334Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR0337Vicia sativa cv. Studenica genome v1.0Vicia sativa
ancanR0258Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR0267Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
anavjR0288Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0321Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
ancarR0291Cicer arietinum
ancarR0303Cicer arietinum
ancarR0317Cicer arietinum
anccaR0251Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR0265Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR0298Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR0305Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR0329Vigna umbellata FF25 genome v1.0Vigna umbellata
anvvaR0294Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvasR0293Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvasR0301Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0290Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvstR0297Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvstR0299Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvstR0302Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0324Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0323Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anpvfR0307Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anpvfR0314Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anvunR0248Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anpvfR0359Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anpvfR0360Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anvunR0287Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
PvulFLAVERTChr11.281Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
rna-KK1_007896Cajanus cajan Asha genome v1.0Cajanus cajan
Vigan.02G007400.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Vigan.06G223300.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Vum_06G01561.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Vigun09g265900.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vigun09g265900.3Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
rna-KK1_012376Cajanus cajan Asha genome v1.0Cajanus cajan
evm.model.Chr11.1647.1.62113172Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vigst.06G191800.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Va08G067840.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
LR48_mrnaVigan08g173400Vigna angularis Jingnong 6 genome v1.1Vigna angularis
rna-XM_014639092.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
jg30471.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vigun11g176600.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Phvul.011G044200.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Phvul.009G023300.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
LR48_mrnaVigan04g253100Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Ca_15377Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Cc_v2.0_14993.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Vfaba.Hedin2.R1.6g053160.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Psat07G0425400-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Vigun11g176600.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Va04G072270.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vfaba.Tiffany.R1.6g044120.1Vicia faba cv. Tiffany genome v1.0Vicia faba
PvulFLAVERTChr09.262Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
rna-XM_014646645.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Cr_15849.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Vum_02G00125.1Vigna umbellata FF25 genome v1.0Vigna umbellata
evm.model.Chr09.1123.1.62113174Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
rna-XM_004507402.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-TanjilR_23471Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_17303gene-TanjilG_17303_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_17303rna-TanjilR_17303_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_17303_La_Tanjil_v1.0rna-TanjilR_17303_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_17303_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:1421138..1421491rna-TanjilR_17303_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:1421138..1421491Lupinus angustifoliusexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_17303_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:1421138..1421491rna-TanjilR_17303_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:1421138..1421491Lupinus angustifoliusCDS


Homology
BLAST of rna-TanjilR_17303 vs. DB:Swiss
Match: RER1B_ARATH (Protein RER1B OS=Arabidopsis thaliana OX=3702 GN=RER1B PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.002e-40
Identity = 87/117 (74.36%), Postives = 97/117 (82.91%), Query Frame = 1
Query:    1 MEGTGGXXXXXXXPVNQWLLEFSRRFQYYLDKSTPHSTYRWIGTVVIASIYILRVFYLQGFYIVSXXXXXXXXXXXXXXXSPLVDPELEPSDGPMLPTKGSDEFKPFIRRLPEFKFW 351
            MEG+GG S S A PV + + E  R +QYYLDK+TPHST RWIGT+V   IY LRV+ + GFYI+SYGLGIYLLNLLIGFLSPLVDPELE SDG  LPT+GSDEFKPFIRRLPEFKFW
Sbjct:    1 MEGSGGDSGSMATPVQKKVHEAWRVYQYYLDKTTPHSTNRWIGTLVFFLIYCLRVYSIHGFYIISYGLGIYLLNLLIGFLSPLVDPELEVSDGATLPTRGSDEFKPFIRRLPEFKFW 117          
BLAST of rna-TanjilR_17303 vs. DB:Swiss
Match: RER1A_ARATH (Protein RER1A OS=Arabidopsis thaliana OX=3702 GN=RER1A PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 4.658e-39
Identity = 85/118 (72.03%), Postives = 98/118 (83.05%), Query Frame = 1
Query:    1 MEGTGGXXXXXXXPVNQWLLEFSRRFQYYLDKSTPHSTYRWIGTVVIASIYILRVFYLQGFYIVSXXXXXXXXXXXXXXXSPLVDPELEP-SDGPMLPTKGSDEFKPFIRRLPEFKFW 351
            M+ +GG S S A PV Q   E  R +Q+YLDK+TPH+ YRWIGT+V+A IY LRV+Y+QGFYI++YGLGIYLLNLLIGFLSPLVDPE    SDGP LPT+GSDEFKPFIRRLPEFKFW
Sbjct:    1 MDESGGDSGSVATPVQQRAHEAWRIYQHYLDKTTPHANYRWIGTLVVALIYCLRVYYIQGFYIIAYGLGIYLLNLLIGFLSPLVDPEAGGVSDGPSLPTRGSDEFKPFIRRLPEFKFW 118          
BLAST of rna-TanjilR_17303 vs. DB:Swiss
Match: RER1C_ARATH (Protein RER1C OS=Arabidopsis thaliana OX=3702 GN=RER1C PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.154e-27
Identity = 58/103 (56.31%), Postives = 79/103 (76.70%), Query Frame = 1
Query:   43 VNQWLLEFSRRFQYYLDKSTPHSTYRWIGTVVIASIYILRVFYLQGFYIVSXXXXXXXXXXXXXXXSPLVDPELEPSDGPMLPTKGSDEFKPFIRRLPEFKFW 351
            VN+ +  FS+R Q+ LDK+ PH  YRWI  + +  IYI+RV++++GFYI++Y +GIYLLNL+I FLSP  DPE   + G  LPT+ SDE++PF+RRLPEFKFW
Sbjct:   37 VNRLIHAFSQRQQHLLDKTVPHVLYRWIACLCVVLIYIVRVYFVEGFYIITYAIGIYLLNLIIAFLSPQEDPEASLTSGGSLPTRRSDEYRPFVRRLPEFKFW 139          
BLAST of rna-TanjilR_17303 vs. DB:Swiss
Match: RER1D_ARATH (Protein RER1D OS=Arabidopsis thaliana OX=3702 GN=At2g18240 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 2.210e-27
Identity = 62/104 (59.62%), Postives = 79/104 (75.96%), Query Frame = 1
Query:   40 PVNQWLLEFSRRFQYYLDKSTPHSTYRWIGTVVIASIYILRVFYLQGFYIVSXXXXXXXXXXXXXXXSPLVDPELEPSDGPMLPTKGSDEFKPFIRRLPEFKFW 351
            P+ +W +EFS+ FQ YLD+S P+   RW+ T+V A IYI RV+ + G++++SYGL  Y+LNLLIGFLSP VDPELE  D   LP   SDE+KPF+RRLPEFKFW
Sbjct:   18 PLAKWRIEFSKSFQNYLDRSAPNIVRRWLVTLVAAVIYIYRVYSVYGYFVISYGLATYILNLLIGFLSPKVDPELEALDPDSLPVDESDEYKPFVRRLPEFKFW 121          
BLAST of rna-TanjilR_17303 vs. DB:Swiss
Match: RER1_BOVIN (Protein RER1 OS=Bos taurus OX=9913 GN=RER1 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 2.313e-25
Identity = 60/105 (57.14%), Postives = 79/105 (75.24%), Query Frame = 1
Query:   43 VNQWLLEFSRRFQYYLDKSTPHSTYRWIGTVVIASIYILRVFYLQGFYIVSXXXXXXXXXXXXXXXSPLVDPEL--EPSDGPMLPTKGSDEFKPFIRRLPEFKFW 351
            V ++     + +Q +LDKSTPH+  RW+ T+ ++ IY++RV+ LQG+YIV+Y LGIY LNL I FLSP VDP L  +  DGP LPTK ++EF+PFIRRLPEFKFW
Sbjct:   18 VYRFFTRLGQIYQSWLDKSTPHTAVRWVVTLGLSFIYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFW 122          
BLAST of rna-TanjilR_17303 vs. DB:Swiss
Match: RER1_CHICK (Protein RER1 OS=Gallus gallus OX=9031 GN=RER1 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.772e-24
Identity = 59/105 (56.19%), Postives = 79/105 (75.24%), Query Frame = 1
Query:   43 VNQWLLEFSRRFQYYLDKSTPHSTYRWIGTVVIASIYILRVFYLQGFYIVSXXXXXXXXXXXXXXXSPLVDPEL--EPSDGPMLPTKGSDEFKPFIRRLPEFKFW 351
            V ++     + +Q +LDKSTP++  RWI T+ ++ IY++RV+ LQG+YIV+Y LGIY LNL I FLSP VDP L  +  DGP LPT+ ++EF+PFIRRLPEFKFW
Sbjct:   18 VYRFFTRLGQIYQSWLDKSTPYTAVRWIVTLGLSFIYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTRQNEEFRPFIRRLPEFKFW 122          
BLAST of rna-TanjilR_17303 vs. DB:Swiss
Match: RER1_PONAB (Protein RER1 OS=Pongo abelii OX=9601 GN=RER1 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.876e-24
Identity = 58/105 (55.24%), Postives = 79/105 (75.24%), Query Frame = 1
Query:   43 VNQWLLEFSRRFQYYLDKSTPHSTYRWIGTVVIASIYILRVFYLQGFYIVSXXXXXXXXXXXXXXXSPLVDPEL--EPSDGPMLPTKGSDEFKPFIRRLPEFKFW 351
            V ++     + +Q +LDKSTP++  RW+ T+ ++ +Y++RV+ LQG+YIV+Y LGIY LNL I FLSP VDP L  +  DGP LPTK ++EF+PFIRRLPEFKFW
Sbjct:   18 VYRFFTRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFW 122          
BLAST of rna-TanjilR_17303 vs. DB:Swiss
Match: RER1_HUMAN (Protein RER1 OS=Homo sapiens OX=9606 GN=RER1 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.876e-24
Identity = 58/105 (55.24%), Postives = 79/105 (75.24%), Query Frame = 1
Query:   43 VNQWLLEFSRRFQYYLDKSTPHSTYRWIGTVVIASIYILRVFYLQGFYIVSXXXXXXXXXXXXXXXSPLVDPEL--EPSDGPMLPTKGSDEFKPFIRRLPEFKFW 351
            V ++     + +Q +LDKSTP++  RW+ T+ ++ +Y++RV+ LQG+YIV+Y LGIY LNL I FLSP VDP L  +  DGP LPTK ++EF+PFIRRLPEFKFW
Sbjct:   18 VYRFFTRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFW 122          
BLAST of rna-TanjilR_17303 vs. DB:Swiss
Match: RER1_RAT (Protein RER1 OS=Rattus norvegicus OX=10116 GN=Rer1 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.030e-24
Identity = 57/94 (60.64%), Postives = 75/94 (79.79%), Query Frame = 1
Query:   76 FQYYLDKSTPHSTYRWIGTVVIASIYILRVFYLQGFYIVSXXXXXXXXXXXXXXXSPLVDPEL--EPSDGPMLPTKGSDEFKPFIRRLPEFKFW 351
            +Q +LDKSTP++  RW+ T+ ++ +Y++RV+ LQG+YIV+Y LGIY LNL I FLSP VDP L  +  DGP LPTK ++EF+PFIRRLPEFKFW
Sbjct:   29 YQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFW 122          
BLAST of rna-TanjilR_17303 vs. DB:Swiss
Match: RER1_MOUSE (Protein RER1 OS=Mus musculus OX=10090 GN=Rer1 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.030e-24
Identity = 57/94 (60.64%), Postives = 75/94 (79.79%), Query Frame = 1
Query:   76 FQYYLDKSTPHSTYRWIGTVVIASIYILRVFYLQGFYIVSXXXXXXXXXXXXXXXSPLVDPEL--EPSDGPMLPTKGSDEFKPFIRRLPEFKFW 351
            +Q +LDKSTP++  RW+ T+ ++ +Y++RV+ LQG+YIV+Y LGIY LNL I FLSP VDP L  +  DGP LPTK ++EF+PFIRRLPEFKFW
Sbjct:   29 YQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFW 122          
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_17303 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
RER1B_ARATH1.002e-4074.36Protein RER1B OS=Arabidopsis thaliana OX=3702 GN=R... [more]
RER1A_ARATH4.658e-3972.03Protein RER1A OS=Arabidopsis thaliana OX=3702 GN=R... [more]
RER1C_ARATH2.154e-2756.31Protein RER1C OS=Arabidopsis thaliana OX=3702 GN=R... [more]
RER1D_ARATH2.210e-2759.62Protein RER1D OS=Arabidopsis thaliana OX=3702 GN=A... [more]
RER1_BOVIN2.313e-2557.14Protein RER1 OS=Bos taurus OX=9913 GN=RER1 PE=2 SV... [more]
RER1_CHICK4.772e-2456.19Protein RER1 OS=Gallus gallus OX=9031 GN=RER1 PE=2... [more]
RER1_PONAB4.876e-2455.24Protein RER1 OS=Pongo abelii OX=9601 GN=RER1 PE=2 ... [more]
RER1_HUMAN4.876e-2455.24Protein RER1 OS=Homo sapiens OX=9606 GN=RER1 PE=1 ... [more]
RER1_RAT7.030e-2460.64Protein RER1 OS=Rattus norvegicus OX=10116 GN=Rer1... [more]
RER1_MOUSE7.030e-2460.64Protein RER1 OS=Mus musculus OX=10090 GN=Rer1 PE=1... [more]
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InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004932Retrieval of early ER protein Rer1PFAMPF03248Rer1coord: 19..117
e-value: 9.2E-38
score: 129.7

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_17303_La_Tanjil_v1.0 ID=rna-TanjilR_17303_La_Tanjil_v1.0; Name=rna-TanjilR_17303; organism=Lupinus angustifolius; type=mRNA; length=354bp
ATGGAAGGAACTGGAGGTAGCAGTGCTTCAGCTGCTGCACCTGTGAACCA
ATGGTTGCTGGAATTTTCGAGGCGATTTCAGTATTATCTTGATAAATCAA
CCCCACACTCTACGTATAGATGGATCGGGACTGTTGTTATTGCGTCAATC
TATATTTTGAGAGTTTTTTATTTACAGGGATTTTACATTGTGTCTTATGG
TCTGGGAATCTATTTGTTGAACCTGTTGATTGGGTTTCTGTCACCTTTGG
TTGATCCTGAGCTGGAGCCTTCTGATGGGCCTATGCTGCCAACTAAAGGT
TCTGATGAGTTCAAACCGTTCATTCGCCGGCTTCCTGAGTTCAAATTTTG
Gtaa
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protein sequence of rna-TanjilR_17303_La_Tanjil_v1.0

>rna-TanjilR_17303_La_Tanjil_v1.0 ID=rna-TanjilR_17303_La_Tanjil_v1.0; Name=rna-TanjilR_17303_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=117bp
MEGTGGSSASAAAPVNQWLLEFSRRFQYYLDKSTPHSTYRWIGTVVIASI
YILRVFYLQGFYIVSYGLGIYLLNLLIGFLSPLVDPELEPSDGPMLPTKG
SDEFKPFIRRLPEFKFW
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mRNA from alignment at Chr_LG13-CM007373.1:1421138..1421491+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_17303_La_Tanjil_v1.0 ID=rna-TanjilR_17303_La_Tanjil_v1.0; Name=rna-TanjilR_17303; organism=Lupinus angustifolius; type=mRNA; length=354bp; location=Sequence derived from: Chr_LG13-CM007373.1:1421138..1421491+ (Lupinus angustifolius
ATGGAAGGAACTGGAGGTAGCAGTGCTTCAGCTGCTGCACCTGTGAACCA ATGGTTGCTGGAATTTTCGAGGCGATTTCAGTATTATCTTGATAAATCAA CCCCACACTCTACGTATAGATGGATCGGGACTGTTGTTATTGCGTCAATC TATATTTTGAGAGTTTTTTATTTACAGGGATTTTACATTGTGTCTTATGG TCTGGGAATCTATTTGTTGAACCTGTTGATTGGGTTTCTGTCACCTTTGG TTGATCCTGAGCTGGAGCCTTCTGATGGGCCTATGCTGCCAACTAAAGGT TCTGATGAGTTCAAACCGTTCATTCGCCGGCTTCCTGAGTTCAAATTTTG Gtaa
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Coding sequence (CDS) from alignment at Chr_LG13-CM007373.1:1421138..1421491+

>rna-TanjilR_17303_La_Tanjil_v1.0 ID=rna-TanjilR_17303_La_Tanjil_v1.0; Name=rna-TanjilR_17303; organism=Lupinus angustifolius; type=CDS; length=354bp; location=Sequence derived from: Chr_LG13-CM007373.1:1421138..1421491+ (Lupinus angustifolius
ATGGAAGGAACTGGAGGTAGCAGTGCTTCAGCTGCTGCACCTGTGAACCA
ATGGTTGCTGGAATTTTCGAGGCGATTTCAGTATTATCTTGATAAATCAA
CCCCACACTCTACGTATAGATGGATCGGGACTGTTGTTATTGCGTCAATC
TATATTTTGAGAGTTTTTTATTTACAGGGATTTTACATTGTGTCTTATGG
TCTGGGAATCTATTTGTTGAACCTGTTGATTGGGTTTCTGTCACCTTTGG
TTGATCCTGAGCTGGAGCCTTCTGATGGGCCTATGCTGCCAACTAAAGGT
TCTGATGAGTTCAAACCGTTCATTCGCCGGCTTCCTGAGTTCAAATTTTG
Gtaa
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR004932Rer1
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane