rna-TanjilR_17303
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_17303 vs. DB:Swiss
Match: RER1B_ARATH (Protein RER1B OS=Arabidopsis thaliana OX=3702 GN=RER1B PE=1 SV=2) HSP 1 Score: 136.732 bits (343), Expect = 1.002e-40 Identity = 87/117 (74.36%), Postives = 97/117 (82.91%), Query Frame = 1 Query: 1 MEGTGGXXXXXXXPVNQWLLEFSRRFQYYLDKSTPHSTYRWIGTVVIASIYILRVFYLQGFYIVSXXXXXXXXXXXXXXXSPLVDPELEPSDGPMLPTKGSDEFKPFIRRLPEFKFW 351 MEG+GG S S A PV + + E R +QYYLDK+TPHST RWIGT+V IY LRV+ + GFYI+SYGLGIYLLNLLIGFLSPLVDPELE SDG LPT+GSDEFKPFIRRLPEFKFW Sbjct: 1 MEGSGGDSGSMATPVQKKVHEAWRVYQYYLDKTTPHSTNRWIGTLVFFLIYCLRVYSIHGFYIISYGLGIYLLNLLIGFLSPLVDPELEVSDGATLPTRGSDEFKPFIRRLPEFKFW 117
BLAST of rna-TanjilR_17303 vs. DB:Swiss
Match: RER1A_ARATH (Protein RER1A OS=Arabidopsis thaliana OX=3702 GN=RER1A PE=1 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 4.658e-39 Identity = 85/118 (72.03%), Postives = 98/118 (83.05%), Query Frame = 1 Query: 1 MEGTGGXXXXXXXPVNQWLLEFSRRFQYYLDKSTPHSTYRWIGTVVIASIYILRVFYLQGFYIVSXXXXXXXXXXXXXXXSPLVDPELEP-SDGPMLPTKGSDEFKPFIRRLPEFKFW 351 M+ +GG S S A PV Q E R +Q+YLDK+TPH+ YRWIGT+V+A IY LRV+Y+QGFYI++YGLGIYLLNLLIGFLSPLVDPE SDGP LPT+GSDEFKPFIRRLPEFKFW Sbjct: 1 MDESGGDSGSVATPVQQRAHEAWRIYQHYLDKTTPHANYRWIGTLVVALIYCLRVYYIQGFYIIAYGLGIYLLNLLIGFLSPLVDPEAGGVSDGPSLPTRGSDEFKPFIRRLPEFKFW 118
BLAST of rna-TanjilR_17303 vs. DB:Swiss
Match: RER1C_ARATH (Protein RER1C OS=Arabidopsis thaliana OX=3702 GN=RER1C PE=2 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 2.154e-27 Identity = 58/103 (56.31%), Postives = 79/103 (76.70%), Query Frame = 1 Query: 43 VNQWLLEFSRRFQYYLDKSTPHSTYRWIGTVVIASIYILRVFYLQGFYIVSXXXXXXXXXXXXXXXSPLVDPELEPSDGPMLPTKGSDEFKPFIRRLPEFKFW 351 VN+ + FS+R Q+ LDK+ PH YRWI + + IYI+RV++++GFYI++Y +GIYLLNL+I FLSP DPE + G LPT+ SDE++PF+RRLPEFKFW Sbjct: 37 VNRLIHAFSQRQQHLLDKTVPHVLYRWIACLCVVLIYIVRVYFVEGFYIITYAIGIYLLNLIIAFLSPQEDPEASLTSGGSLPTRRSDEYRPFVRRLPEFKFW 139
BLAST of rna-TanjilR_17303 vs. DB:Swiss
Match: RER1D_ARATH (Protein RER1D OS=Arabidopsis thaliana OX=3702 GN=At2g18240 PE=2 SV=2) HSP 1 Score: 103.219 bits (256), Expect = 2.210e-27 Identity = 62/104 (59.62%), Postives = 79/104 (75.96%), Query Frame = 1 Query: 40 PVNQWLLEFSRRFQYYLDKSTPHSTYRWIGTVVIASIYILRVFYLQGFYIVSXXXXXXXXXXXXXXXSPLVDPELEPSDGPMLPTKGSDEFKPFIRRLPEFKFW 351 P+ +W +EFS+ FQ YLD+S P+ RW+ T+V A IYI RV+ + G++++SYGL Y+LNLLIGFLSP VDPELE D LP SDE+KPF+RRLPEFKFW Sbjct: 18 PLAKWRIEFSKSFQNYLDRSAPNIVRRWLVTLVAAVIYIYRVYSVYGYFVISYGLATYILNLLIGFLSPKVDPELEALDPDSLPVDESDEYKPFVRRLPEFKFW 121
BLAST of rna-TanjilR_17303 vs. DB:Swiss
Match: RER1_BOVIN (Protein RER1 OS=Bos taurus OX=9913 GN=RER1 PE=2 SV=2) HSP 1 Score: 97.4413 bits (241), Expect = 2.313e-25 Identity = 60/105 (57.14%), Postives = 79/105 (75.24%), Query Frame = 1 Query: 43 VNQWLLEFSRRFQYYLDKSTPHSTYRWIGTVVIASIYILRVFYLQGFYIVSXXXXXXXXXXXXXXXSPLVDPEL--EPSDGPMLPTKGSDEFKPFIRRLPEFKFW 351 V ++ + +Q +LDKSTPH+ RW+ T+ ++ IY++RV+ LQG+YIV+Y LGIY LNL I FLSP VDP L + DGP LPTK ++EF+PFIRRLPEFKFW Sbjct: 18 VYRFFTRLGQIYQSWLDKSTPHTAVRWVVTLGLSFIYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFW 122
BLAST of rna-TanjilR_17303 vs. DB:Swiss
Match: RER1_CHICK (Protein RER1 OS=Gallus gallus OX=9031 GN=RER1 PE=2 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 4.772e-24 Identity = 59/105 (56.19%), Postives = 79/105 (75.24%), Query Frame = 1 Query: 43 VNQWLLEFSRRFQYYLDKSTPHSTYRWIGTVVIASIYILRVFYLQGFYIVSXXXXXXXXXXXXXXXSPLVDPEL--EPSDGPMLPTKGSDEFKPFIRRLPEFKFW 351 V ++ + +Q +LDKSTP++ RWI T+ ++ IY++RV+ LQG+YIV+Y LGIY LNL I FLSP VDP L + DGP LPT+ ++EF+PFIRRLPEFKFW Sbjct: 18 VYRFFTRLGQIYQSWLDKSTPYTAVRWIVTLGLSFIYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTRQNEEFRPFIRRLPEFKFW 122
BLAST of rna-TanjilR_17303 vs. DB:Swiss
Match: RER1_PONAB (Protein RER1 OS=Pongo abelii OX=9601 GN=RER1 PE=2 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 4.876e-24 Identity = 58/105 (55.24%), Postives = 79/105 (75.24%), Query Frame = 1 Query: 43 VNQWLLEFSRRFQYYLDKSTPHSTYRWIGTVVIASIYILRVFYLQGFYIVSXXXXXXXXXXXXXXXSPLVDPEL--EPSDGPMLPTKGSDEFKPFIRRLPEFKFW 351 V ++ + +Q +LDKSTP++ RW+ T+ ++ +Y++RV+ LQG+YIV+Y LGIY LNL I FLSP VDP L + DGP LPTK ++EF+PFIRRLPEFKFW Sbjct: 18 VYRFFTRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFW 122
BLAST of rna-TanjilR_17303 vs. DB:Swiss
Match: RER1_HUMAN (Protein RER1 OS=Homo sapiens OX=9606 GN=RER1 PE=1 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 4.876e-24 Identity = 58/105 (55.24%), Postives = 79/105 (75.24%), Query Frame = 1 Query: 43 VNQWLLEFSRRFQYYLDKSTPHSTYRWIGTVVIASIYILRVFYLQGFYIVSXXXXXXXXXXXXXXXSPLVDPEL--EPSDGPMLPTKGSDEFKPFIRRLPEFKFW 351 V ++ + +Q +LDKSTP++ RW+ T+ ++ +Y++RV+ LQG+YIV+Y LGIY LNL I FLSP VDP L + DGP LPTK ++EF+PFIRRLPEFKFW Sbjct: 18 VYRFFTRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFW 122
BLAST of rna-TanjilR_17303 vs. DB:Swiss
Match: RER1_RAT (Protein RER1 OS=Rattus norvegicus OX=10116 GN=Rer1 PE=1 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 7.030e-24 Identity = 57/94 (60.64%), Postives = 75/94 (79.79%), Query Frame = 1 Query: 76 FQYYLDKSTPHSTYRWIGTVVIASIYILRVFYLQGFYIVSXXXXXXXXXXXXXXXSPLVDPEL--EPSDGPMLPTKGSDEFKPFIRRLPEFKFW 351 +Q +LDKSTP++ RW+ T+ ++ +Y++RV+ LQG+YIV+Y LGIY LNL I FLSP VDP L + DGP LPTK ++EF+PFIRRLPEFKFW Sbjct: 29 YQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFW 122
BLAST of rna-TanjilR_17303 vs. DB:Swiss
Match: RER1_MOUSE (Protein RER1 OS=Mus musculus OX=10090 GN=Rer1 PE=1 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 7.030e-24 Identity = 57/94 (60.64%), Postives = 75/94 (79.79%), Query Frame = 1 Query: 76 FQYYLDKSTPHSTYRWIGTVVIASIYILRVFYLQGFYIVSXXXXXXXXXXXXXXXSPLVDPEL--EPSDGPMLPTKGSDEFKPFIRRLPEFKFW 351 +Q +LDKSTP++ RW+ T+ ++ +Y++RV+ LQG+YIV+Y LGIY LNL I FLSP VDP L + DGP LPTK ++EF+PFIRRLPEFKFW Sbjct: 29 YQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFW 122 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_17303 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_17303_La_Tanjil_v1.0 ID=rna-TanjilR_17303_La_Tanjil_v1.0; Name=rna-TanjilR_17303; organism=Lupinus angustifolius; type=mRNA; length=354bpback to top protein sequence of rna-TanjilR_17303_La_Tanjil_v1.0 >rna-TanjilR_17303_La_Tanjil_v1.0 ID=rna-TanjilR_17303_La_Tanjil_v1.0; Name=rna-TanjilR_17303_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=117bpback to top mRNA from alignment at Chr_LG13-CM007373.1:1421138..1421491+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_17303_La_Tanjil_v1.0 ID=rna-TanjilR_17303_La_Tanjil_v1.0; Name=rna-TanjilR_17303; organism=Lupinus angustifolius; type=mRNA; length=354bp; location=Sequence derived from: Chr_LG13-CM007373.1:1421138..1421491+ (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG13-CM007373.1:1421138..1421491+ >rna-TanjilR_17303_La_Tanjil_v1.0 ID=rna-TanjilR_17303_La_Tanjil_v1.0; Name=rna-TanjilR_17303; organism=Lupinus angustifolius; type=CDS; length=354bp; location=Sequence derived from: Chr_LG13-CM007373.1:1421138..1421491+ (Lupinus angustifoliusback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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