rna-TanjilR_06545
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_06545 vs. DB:Swiss
Match: RMA1_CAPAN (E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1) HSP 1 Score: 164.466 bits (415), Expect = 3.173e-49 Identity = 91/211 (43.13%), Postives = 129/211 (61.14%), Query Frame = 1 Query: 70 GKWKSSSDVIADSDTNASGGFDCNICLERVEDPVVTLCGHLYCWPCIYKWL-----SSETEEQQKSQCPVCKSEVSRSSLVPLYCH-GQTRRASEGKGHQVGTVIPPRPPAPTSYNT----TSASHPTSQSXXXXXXXXXXXXXXXQQLNSIPTSYTSPMLSTSSLQDMPFGLFGGMIYSRVFSNQVTDIFTNPNSYDNSWNSNPRFRSHL 672 GKWKS +D + + N SGGFDCNICL+ V +PV+TLCGHLYCWPCIYKW+ SSE +QQ+ QCPVCK+EVS +L+PLY GQ+ + SEGK +G VIP RPP+P T+ S+P+ R + Q + + + SP +T+++ + + G + Y+R+F N T ++T PNSY+ + +S+PR R L Sbjct: 22 GKWKSMNDEVEE---NISGGFDCNICLDCVHEPVITLCGHLYCWPCIYKWIYFQSVSSENSDQQQPQCPVCKAEVSEKTLIPLYGRGGQSTKPSEGKAPNLGIVIPQRPPSPRCGGHFLLPTTDSNPSQLLQRRGYQQQSQTRQPAYQGSYMSSPMLSPGGATANM--LQHSMIGEVAYARIFGNSSTTMYTYPNSYNLAISSSPRMRRQL 227
BLAST of rna-TanjilR_06545 vs. DB:Swiss
Match: RMA1_ARATH (E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana OX=3702 GN=RMA1 PE=1 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 2.109e-38 Identity = 85/233 (36.48%), Postives = 115/233 (49.36%), Query Frame = 1 Query: 1 MAMDQYFEEAVPEIGSFEDKPYSGKWKSSSDVIAD--SDTNASGGFDCNICLERVEDPVVTLCGHLYCWPCIYKWL-----SSETEEQQKSQCPVCKSEVSRSSLVPLYCHGQTRRASEGKGHQVGTVIPPRPPAPTSYNTTSASHPTSQSXXXXXXXXXXXXXXXQQLNSIPTS--YTSPMLSTSSLQDMPFGLFGGMIYSRVFSNQVTDIFTNPNSYDNSWNSNPRFRSHL 672 MA+DQ FE+A + + + K K + SD FDCNICL+ V++PVVTLCGHL+CWPCI+KWL S+ E Q+ QCPVCKS+VS S+LVPLY G+ EGK +P RP P P S Q P S +S LS S++ D + G M+ +R+F +V D F P++Y+ + S PR R + Sbjct: 1 MALDQSFEDAALLGELYGEGAFCFKSKKPEPITVSVPSDDTDDSNFDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCKSKVSHSTLVPLYGRGRCTTQEEGKNS-----VPKRPVGP----VYRLEMPNSPYASTDLRLSQRVHFNSPQEGYYPVSGVMSSNSLSYSAVLDPVMVMVGEMVATRLFGTRVMDRFAYPDTYNLAGTSGPRMRRRI 224
BLAST of rna-TanjilR_06545 vs. DB:Swiss
Match: RMA3_ARATH (E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana OX=3702 GN=RMA3 PE=1 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 5.806e-29 Identity = 68/176 (38.64%), Postives = 94/176 (53.41%), Query Frame = 1 Query: 115 NASGGFDCNICLERVEDPVVTLCGHLYCWPCIYKW----LSSETEEQQKSQCPVCKSEVSRSSLVPLYCHGQTRRASE--GKGHQVGTVIPPRPPAPTSYN--TTSAS--HPTSQSXXXXXXXXX--------XXXXXXQQLNSIPTSYTSPMLSTSSLQDMPFGLFGGMIYSRVF 588 N SG FDCNICL+ DPVVTLCGHL+CWPCIYKW LSS + +Q ++ CPVCKS ++ +SLVPLY G + +S K + PR PAP++ TSAS +P+ Q H N++ S+ P++ G+FG ++Y+R+F Sbjct: 37 NESGCFDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHVQLSSVSVDQHQNNCPVCKSNITITSLVPLYGRGMSSPSSTFGSKKQDALSTDIPRRPAPSALRNPITSASSLNPSLQHQTLSPSFHNHQYSPRGFTTTESTDLANAVMMSFLYPVI----------GMFGDLVYTRIF 202
BLAST of rna-TanjilR_06545 vs. DB:Swiss
Match: RMA2_ARATH (E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana OX=3702 GN=RMA2 PE=1 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 7.268e-26 Identity = 48/103 (46.60%), Postives = 64/103 (62.14%), Query Frame = 1 Query: 112 TNASGGFDCNICLERVEDPVVTLCGHLYCWPCIYKWLSSETEEQQKS----------QCPVCKSEVSRSSLVPLYCHGQTRRASEGKGHQVGTVIPPRPPAPT 390 ++ G FDCNICL++V DPVVTLCGHL+CWPCI+KW + +Q+ +CPVCKS+VS ++LVP+Y GQ K Q G+ +P RP P Sbjct: 13 VDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYGRGQ-------KAPQSGSNVPSRPTGPV 108
BLAST of rna-TanjilR_06545 vs. DB:Swiss
Match: RNF5_HUMAN (E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens OX=9606 GN=RNF5 PE=1 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 1.949e-20 Identity = 44/97 (45.36%), Postives = 56/97 (57.73%), Query Frame = 1 Query: 115 NASGGFDCNICLERVEDPVVTLCGHLYCWPCIYKWLSSETEEQQKSQCPVCKSEVSRSSLVPLYCHGQTRRASEGKGHQVGTVIPPRP----PAPTS 393 A F+CNICLE + VV++CGHLYCWPC+++WL + E Q +CPVCK+ +SR +VPLY G K PPRP PAP S Sbjct: 20 GAGATFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQ---ECPVCKAGISREKVVPLYGRGSQ------KPQDPRLKTPPRPQGQRPAPES 107
BLAST of rna-TanjilR_06545 vs. DB:Swiss
Match: RNF5_RAT (E3 ubiquitin-protein ligase RNF5 OS=Rattus norvegicus OX=10116 GN=Rnf5 PE=2 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 2.099e-20 Identity = 44/97 (45.36%), Postives = 57/97 (58.76%), Query Frame = 1 Query: 115 NASGGFDCNICLERVEDPVVTLCGHLYCWPCIYKWLSSETEEQQKSQCPVCKSEVSRSSLVPLYCHGQTRRASEGKGHQVGTVIPPRP----PAPTS 393 AS F+CNICLE + VV++CGHLYCWPC+++WL + + Q +CPVCK+ +SR +VPLY G K PPRP PAP S Sbjct: 20 GASATFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPDRQ---ECPVCKAGISREKVVPLYGRGSQ------KPQDPRLKTPPRPQGQRPAPES 107
BLAST of rna-TanjilR_06545 vs. DB:Swiss
Match: RNF5_MOUSE (E3 ubiquitin-protein ligase RNF5 OS=Mus musculus OX=10090 GN=Rnf5 PE=1 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 2.099e-20 Identity = 44/97 (45.36%), Postives = 57/97 (58.76%), Query Frame = 1 Query: 115 NASGGFDCNICLERVEDPVVTLCGHLYCWPCIYKWLSSETEEQQKSQCPVCKSEVSRSSLVPLYCHGQTRRASEGKGHQVGTVIPPRP----PAPTS 393 AS F+CNICLE + VV++CGHLYCWPC+++WL + + Q +CPVCK+ +SR +VPLY G K PPRP PAP S Sbjct: 20 GASATFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPDRQ---ECPVCKAGISREKVVPLYGRGSQ------KPQDPRLKTPPRPQGQRPAPES 107
BLAST of rna-TanjilR_06545 vs. DB:Swiss
Match: RN185_CHICK (E3 ubiquitin-protein ligase RNF185 OS=Gallus gallus OX=9031 GN=RNF185 PE=2 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 3.007e-20 Identity = 35/74 (47.30%), Postives = 50/74 (67.57%), Query Frame = 1 Query: 100 ADSDTNASGGFDCNICLERVEDPVVTLCGHLYCWPCIYKWLSSETEEQQKSQCPVCKSEVSRSSLVPLYCHGQT 321 A +TN F+CNICL+ +D V++LCGHL+CWPC+++WL + Q CPVCK+ +SR ++PLY G T Sbjct: 29 AGDNTNQDNTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQ---VCPVCKAGISRDKVIPLYGRGST 99
BLAST of rna-TanjilR_06545 vs. DB:Swiss
Match: RN185_MOUSE (E3 ubiquitin-protein ligase RNF185 OS=Mus musculus OX=10090 GN=Rnf185 PE=2 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 1.376e-19 Identity = 36/74 (48.65%), Postives = 50/74 (67.57%), Query Frame = 1 Query: 112 TNASGG----FDCNICLERVEDPVVTLCGHLYCWPCIYKWLSSETEEQQKSQCPVCKSEVSRSSLVPLYCHGQT 321 T SGG F+CNICL+ +D V++LCGHL+CWPC+++WL + Q CPVCK+ +SR ++PLY G T Sbjct: 27 TGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQ---VCPVCKAGISRDKVIPLYGRGST 97
BLAST of rna-TanjilR_06545 vs. DB:Swiss
Match: RN185_RAT (E3 ubiquitin-protein ligase RNF185 OS=Rattus norvegicus OX=10116 GN=Rnf185 PE=2 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 8.986e-19 Identity = 35/71 (49.30%), Postives = 49/71 (69.01%), Query Frame = 1 Query: 121 SGG----FDCNICLERVEDPVVTLCGHLYCWPCIYKWLSSETEEQQKSQCPVCKSEVSRSSLVPLYCHGQT 321 SGG F+CNICL+ +D V++LCGHL+CWPC+++WL + Q CPVCK+ +SR ++PLY G T Sbjct: 30 SGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQ---VCPVCKAGISRDKVIPLYGRGST 97 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_06545 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_06545_La_Tanjil_v1.0 ID=rna-TanjilR_06545_La_Tanjil_v1.0; Name=rna-TanjilR_06545; organism=Lupinus angustifolius; type=mRNA; length=673bpback to top protein sequence of rna-TanjilR_06545_La_Tanjil_v1.0 >rna-TanjilR_06545_La_Tanjil_v1.0 ID=rna-TanjilR_06545_La_Tanjil_v1.0; Name=rna-TanjilR_06545_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=196bpback to top mRNA from alignment at Chr_LG13-CM007373.1:3507932..3508604+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_06545_La_Tanjil_v1.0 ID=rna-TanjilR_06545_La_Tanjil_v1.0; Name=rna-TanjilR_06545; organism=Lupinus angustifolius; type=mRNA; length=673bp; location=Sequence derived from: Chr_LG13-CM007373.1:3507932..3508604+ (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG13-CM007373.1:3507932..3508604+ >rna-TanjilR_06545_La_Tanjil_v1.0 ID=rna-TanjilR_06545_La_Tanjil_v1.0; Name=rna-TanjilR_06545; organism=Lupinus angustifolius; type=CDS; length=591bp; location=Sequence derived from: Chr_LG13-CM007373.1:3507932..3508604+ (Lupinus angustifoliusback to top |