rna-TanjilR_06533

Transcript Overview
Namerna-TanjilR_06533
Unique Namerna-TanjilR_06533_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length2926
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG13-CM007373.1supercontigChr_LG13-CM007373.1:3594158..3597083 +Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananR246Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR250Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiR0307Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR0316Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR0337Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaR0263Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR0268Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR0297Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR0299Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
anccR0339Cajanus cajan Asha genome v1.0Cajanus cajan
anccR0364Cajanus cajan Asha genome v1.0Cajanus cajan
ancrR0333Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ancrR0357Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
anpsR0255Pisum sativum Cameor genome v1aPisum sativum
anpvR0322Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR0331Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anvuR0258Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR0274Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anasR0290Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR0298Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR0305Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR0343Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR0350Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anzwsR0281Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anzwsR0298Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anzwsR0308Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
antifR0261Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR0262Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
antifR0301Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR0303Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
anvrvR0277Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvuaR0242Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvssR0289Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvuaR0258Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvssR0319Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR0321Vicia sativa cv. Studenica genome v1.0Vicia sativa
ancanR0237Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR0266Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
anavjR0283Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0294Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0300Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0324Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
ancarR0264Cicer arietinum
ancarR0295Cicer arietinum
anccaR0238Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR0256Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR0284Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR0322Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR0324Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR0340Vigna umbellata FF25 genome v1.0Vigna umbellata
anvvaR0284Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvvaR0301Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvvaR0311Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvasR0292Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0289Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0317Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvasR0319Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0316Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvstR0318Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0335Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0334Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvunR0243Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anpvfR0320Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anpvfR0326Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anpvfR0331Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anvunR0262Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anpvfR0339Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris

Orthologs
Gene/TranscriptAssemblySpecies
evm.model.Chr11.1064Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
PvulFLAVERTChr11.1000711Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Vfaba.Tiffany.R1.1g034240.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Vigun11g109000.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
XM_058917898.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Vfaba.Hedin2.R1.1g050520.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Cr_11513.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Va08G052960.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vum_06G00910.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Cr_17283.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Phvul.011G112400.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-KK1_022476Cajanus cajan Asha genome v1.0Cajanus cajan
Cc_v2.0_09727.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
jg43886.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
rna-XM_004507148.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
LR48_mrnaVigan08g111400Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vigan.06G137800.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Vigun11g109000.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Psat05G0748000-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Vfaba.Hedin2.R1.6g007880.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Ca_18036.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
jg5658.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Ca_14103Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Vigst.06G133900.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Psat07G0522400-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
XM_058877155.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Ca_19013Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
rna-XM_014665020.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
rna-XM_004487263.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Psat5g270160.1Pisum sativum Cameor genome v1aPisum sativum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-TanjilR_03065Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_06533gene-TanjilG_06533_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_06533rna-TanjilR_06533_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_06533_La_Tanjil_v1.0rna-TanjilR_06533_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_06533_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3594158..3594796rna-TanjilR_06533_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3594158..3594796Lupinus angustifoliusexon
rna-TanjilR_06533_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3595718..3595795rna-TanjilR_06533_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3595718..3595795Lupinus angustifoliusexon
rna-TanjilR_06533_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3596007..3597083rna-TanjilR_06533_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3596007..3597083Lupinus angustifoliusexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_06533_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3594158..3594796rna-TanjilR_06533_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3594158..3594796Lupinus angustifoliusCDS
rna-TanjilR_06533_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3595718..3595795rna-TanjilR_06533_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3595718..3595795Lupinus angustifoliusCDS
rna-TanjilR_06533_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3596007..3597083rna-TanjilR_06533_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3596007..3597083Lupinus angustifoliusCDS


Homology
[Close]
BLAST of rna-TanjilR_06533 vs. DB:Swiss
Match: NAF1_HUMAN (H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Homo sapiens OX=9606 GN=NAF1 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.314e-15
Identity = 59/183 (32.24%), Postives = 103/183 (56.28%), Query Frame = 2 
Query: 1748 SLKKITIIIRPEEMDQNRL*IIVEMNLLKILILQIVGAQVIVEGVEKHEPLNEGSILWMTENRKPLGLVDEIFGPVKTPYYIVRYNSESEV-PEGIHAGTLISFVP---EFADYVLNNKDVYKKGYDASGANDEELSDE-YEFSDDEKEAEYRRMQRTAKRDKTDQNQGQRKINRKKSSPKQN 2281
            S++++TII+ PE+++      +  + ++  +I Q+V    I+E +    P+NE ++++ + +R+  G + EIFGPV  P+Y++R+NS   +  +GI     + F P   +F  Y+   K    KG DAS  ND+E   E  +FSDDEKE E       AK+ K  Q QG++K+  + + P ++
Sbjct:  184 SVEELTIIL-PEDIE------LKPLGMVSSIIEQLV----IIESMTNLPPVNEETVIFKS-DRQAAGKIFEIFGPVAHPFYVLRFNSSDHIESKGIKIKETMYFAPSMKDFTQYIFTEKLKQDKGSDASWKNDQEPPPEALDFSDDEKEKE-------AKQRKKSQIQGRKKLKSEFNEPGED 347
[Close]
BLAST of rna-TanjilR_06533 vs. DB:Swiss
Match: NAF1_RAT (H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Rattus norvegicus OX=10116 GN=Naf1 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.946e-14
Identity = 50/145 (34.48%), Postives = 80/145 (55.17%), Query Frame = 2 
Query: 1841 ILQIVGAQVIVEGVEKHEPLNEGSILWMTENRKPLGLVDEIFGPVKTPYYIVRYNSESEV-PEGIHAGTLISFVP---EFADYVLNNKDVYKKGYDASGANDEELSDE-YEFSDDEKEAEYRRMQRTAKRDKTDQNQGQRKINRK 2260
            +  I+   VI+E +    P+NE ++++ + +R+  G + EIFGPV  P+Y++R+NS   +  +GI     + F P   +F  Y+   K    +G DAS  ND+E   E  +FSDDEKE E       AK+ K  Q QG++K+  +
Sbjct:  169 VSSIIEQLVIIESMTNIPPVNEDTVIFKS-DRQAAGKIFEIFGPVAHPFYVLRFNSSEHIESKGIKIKDTMYFAPSMKDFTQYIFTEKLKQDRGSDASWKNDQEPPPEALDFSDDEKEKE-------AKQRKKSQIQGRKKLKSE 305
[Close]
BLAST of rna-TanjilR_06533 vs. DB:Swiss
Match: NAF1_MOUSE (H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Mus musculus OX=10090 GN=Naf1 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 2.000e-14
Identity = 59/175 (33.71%), Postives = 95/175 (54.29%), Query Frame = 2 
Query: 1748 SLKKITIIIRPEEMDQNRL*IIVEMNLLKIL--ILQIVGAQVIVEGVEKHEPLNEGSILWMTENRKPLGLVDEIFGPVKTPYYIVRYNSESEV-PEGIHAGTLISFVP---EFADYVLNNKDVYKKGYDASGANDEELSDE-YEFSDDEKEAEYRRMQRTAKRDKTDQNQGQRKI 2251
            S++++T+I+ PE++             LK L  +  I+   VI+E V    P+NE ++++ + +R+  G + EIFGPV  P+Y++R+NS   +  +GI     + F P   +F  Y+   K    +G DAS  ND+E   E  +FSDDEKE E       AK+ K  Q QG++K+
Sbjct:  177 SVEELTVIL-PEDI------------ALKPLGKVSSIIEQLVIIESVTNIPPVNEDTVIFKS-DRQAAGKIFEIFGPVAHPFYVLRFNSSDHIESKGIKINDTMYFAPSMKDFTQYIFTEKLKQDRGSDASWKNDQEPPPEVLDFSDDEKEKE-------AKQRKKSQIQGRKKL 330
[Close]
BLAST of rna-TanjilR_06533 vs. DB:Swiss
Match: NAF1_SCHPO (H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=naf1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.713e-11
Identity = 46/119 (38.66%), Postives = 70/119 (58.82%), Query Frame = 2 
Query: 1841 ILQIVGAQVIVEGVEKHEPL--NEGSILWMTENRKPLGLVDEIFGPVKTPYYIVRYNSESEVPEGIHA--GTLISFVPEFADYVLNNKDVYKKGYDASGANDEELS-DEYEFSDDEKEA 2182
            I+Q++  +V+V+     E +  +E ++L   E+R  +G + E FGPV +PYYIVR+++E E    I+A  G  + +VP  A+ +      Y KG DAS   DEE++  E EFSDDE E 
Sbjct:  256 IIQVLKREVVVKSDIDDEKIVFDEKTVLCF-EDRSIIGYIHETFGPVSSPYYIVRFSTEEEC-SAINACMGRPVFYVPTMANKIDPEPLKYIKGSDASNVYDEEINPSEQEFSDDEAEV 372
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_06533 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 4
Match NameE-valueIdentityDescription
NAF1_HUMAN1.314e-1532.24H/ACA ribonucleoprotein complex non-core subunit N... [more]
NAF1_RAT1.946e-1434.48H/ACA ribonucleoprotein complex non-core subunit N... [more]
NAF1_MOUSE2.000e-1433.71H/ACA ribonucleoprotein complex non-core subunit N... [more]
NAF1_SCHPO1.713e-1138.66H/ACA ribonucleoprotein complex non-core subunit N... [more]
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InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007504H/ACA ribonucleoprotein complex, subunit Gar1/Naf1PFAMPF04410Gar1coord: 213..359
e-value: 9.4E-39
score: 132.6
IPR038664H/ACA RNP complex subunit Gar1/Naf1, Cbf5-binding domainGENE3D2.40.10.230coord: 203..308
e-value: 4.0E-29
score: 102.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 327..415
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..109
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 545..597
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 545..559
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 67..189
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 347..372
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 379..408
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 160..174
IPR009000Translation protein, beta-barrel domain superfamilySUPERFAMILY50447Translation proteinscoord: 231..294

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_06533_La_Tanjil_v1.0 ID=rna-TanjilR_06533_La_Tanjil_v1.0; Name=rna-TanjilR_06533; organism=Lupinus angustifolius; type=mRNA; length=2926bp
ATGGCTACCCAACACAATATCAATGGCAACAACTTCGAAGGGAATGGGAT
TGCACTTGCTACCCAGTTGGAATTGGAGCTTGACCCAAATTTGATTGGGG
CTAACTGGGTTGAAGAGTGTGAAAAGGTTGGGTCTTTTGATGTGGGTTAC
CCTATTGAAGAAGCGGTAGAGAAAATCAGTTTAGTTGATGGGTCTCAAAC
TTGTGTTACAACAACTCATGGGAATGGTAACAAAGATGAGACTAAAGATG
AGAGTAAAGATGAGATTAAAGATGAGAGTAAAGATAAGATTAAAGATGAG
attaaagatgaaaataaatCTGAGTCTGAATCTGATTCTGAAAGTGAAAG
TGAAGATTCAAGTTCTGAAGAAAGCAGTAGAAGTAGTAGCAGCAGTGACA
GTGACAGTGACAGTGACAGTGACAGTGATAGtgatagtgatgaagatgat
aagAAAAACAAAGGGGATGTTGAAGAAGGTGAGATTGAAGGttctgagga
tgaggatgacgatgatgatagCAAAGGCGGGGATAAGATGGTTACTTGTG
GCttggatgatgatgatattgatgttcttgaatttgatgaagatgatggt
gCAAAAGGAGAACCTATCAGGTCAAAAAATGAGCTTGaggtatttatttt
ttaaaattatctttcttatattattaatcaaatattaacattttacaaCA
CCACCACCGTGGTTCTTTTGTGAATTAGTTCCTGTATACCAATCTGTGGT
TCTTTTTCTGAATTTGTTCTTGCGTACAAATCCGTGTTTCTTTTGCGAAT
TTGTTCCTGAGAAGGAACGAGAATGAACCAGATTTTCATCTATAGTTTAA
gttaaagaaagaacaaaaaaaaagagtaattcTGTCATGTGTATTCACCT
ACATGATTGAGCTAtaacaaacaataaataattttatcatgtGGTATTTT
TCATATGGTGAAACAAAAGTTGTTTCGAACCTACAAGAAACAACATTAGA
AACAGCTGTGCATGGAGCTACAGAAACCCTATGACTATACCCCTAATGTA
CCGGTATTTGATGGGTAAAGTACCGTGTACTACCTACTCGTGCCAGTACC
GAAGATAACTGTGTATCACGTCATGTGACTATGAACACGACTCTATATGG
TCTCATAGTGTTTCATTAGGAATTACCAGCAGTGCAAGTGAAAGATGCAC
TTTATGCATATACTGAGTTGTTTGGTTTGTCTCACAATGCTTTTATTTGA
GTTCGGTTTGTTCTGAGAGGCTATTTCGTGCCAATTTTTGTCACACTAGT
TATATGTGGGCTGTCATTATTTGAGTCCTTGACTTTTTACTTCGAGACTA
TATTAGGAACCTAGAATTGAACGAAGTTTGGATGTGAGAAAATTTGCAAA
TCTCAACTGGATGAAATACACGTCACAAACTAAAGATGaagaataatttt
tattcaGTAATATCTTTAACTAAGTGTGTGGCTACTAGGCTAAGATGTGT
GTTattctacaaatttattttGCTTATTGGGCTTTCTTTTGAATGGTATA
AACTTTGCAGAATCTGCCTCCAGTTCCTCCAGTCGAGGTGACCTTAGAGC
CACACCATCAAGTGCAGCCTGTGGGAGTTGTTATGTCGGTAAGGTCAAAG
GACTCTCATCTCTAATCACAGAATTTGAGTAGACATTCTAGTACAGAGTT
TGTTTATTGCAAATTTAGTTTCTATAGCTGCTTTGTGAACCTCtgtctct
ttaaaaaaaattacgaTAATAATACGACCAGAGGAAATGGATCAGAACAG
GTTATAGATTATCGTTGAAATGAACTTACTTAAGATTCTCATTTTACAGA
TTGTTGGTGCTCAAGTTATTGTGGAAGGAGTAGAAAAGCACGAGCCTCTA
AATGAGGGTTCTATTCTCTGGATGACTGAAAACCGAAAACCACTAGGGTT
AGTTGATGAAATCTTTGGACCAGTCAAAACCCCTTACTATATAGTGAGAT
ACAATTCTGAAAGTGAAGTTCCCGAGGGTATCCACGCTGGAACTTTGATC
TCATTCGTTCCAGAATTTGCAGATTATGTGCTTAATAACAAGGATGTTTA
TAAGAAAGGGTACGATGCATCTGGTGCGAATGATGAAGAGTTGTCTGATG
AATATGAGTTTTCAGATGACGAGAAAGAGGCAGAGTACAGGAGAATGCAA
AGAACAGCGAAGAGAGACAAAACTGATCAAAATCAGGGCCAGAGAAAAAT
CAATAGAAAGAAATCTTCACCCAAACAGAATGTTGCCCCTTCCATCTCTG
GTACACCTGCACCGACATTGCCTGTTCATGGAAATTCTTCACCTTTTCCA
GGAAATTTGCAAAGACATTTTGGGGGACCTACTATGGCTCCACCGTTCCG
GATTCCACCCTCAAATGCAGGTCCTAACTTTGCAACAAATGGAGTTTGGA
CAAATGGGACAACACTCCCACAGCAGCCACAGTCTGCTCTGCCTCCTAAT
GCATTTCCTAACAATGGCATCCCATGGTACCCACAAAACACTCAAATTCC
TCATCAGTTGTCTGGGCCAGGAATGCAATTTCAACAGCAGTTACATCCCA
ATCAGGGACCTTTTTTGCAAGCCATGTTTCCTGGGATACTTCCCAATATG
TTTGCACAGCCCATGAATGCACTGGGGCTTGTTGGTCAAAACCAAATGCA
GTTTGGGTTGAACACACCCTTTCAACAGGTTCAGCGACCTGTATTTTCTG
CACAACAGGGTTTCCCATCTGGTGAATTGCAGTCTCAAGGAAACCTTAAT
TTGCCTTCCTGTACTATTCCAGGTCCCCCACCTCAATTTCGTCCTAACGC
ATCTTCTAATCGTGGTAGTCGTGGGGGGAGAACATTTCGTGGAGCGGGTA
GAAAAGGGTGGCGACCATCCAGGTGA
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protein sequence of rna-TanjilR_06533_La_Tanjil_v1.0

>rna-TanjilR_06533_La_Tanjil_v1.0 ID=rna-TanjilR_06533_La_Tanjil_v1.0; Name=rna-TanjilR_06533_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=597bp
MATQHNINGNNFEGNGIALATQLELELDPNLIGANWVEECEKVGSFDVGY
PIEEAVEKISLVDGSQTCVTTTHGNGNKDETKDESKDEIKDESKDKIKDE
IKDENKSESESDSESESEDSSSEESSRSSSSSDSDSDSDSDSDSDSDEDD
KKNKGDVEEGEIEGSEDEDDDDDSKGGDKMVTCGLDDDDIDVLEFDEDDG
AKGEPIRSKNELENLPPVPPVEVTLEPHHQVQPVGVVMSIVGAQVIVEGV
EKHEPLNEGSILWMTENRKPLGLVDEIFGPVKTPYYIVRYNSESEVPEGI
HAGTLISFVPEFADYVLNNKDVYKKGYDASGANDEELSDEYEFSDDEKEA
EYRRMQRTAKRDKTDQNQGQRKINRKKSSPKQNVAPSISGTPAPTLPVHG
NSSPFPGNLQRHFGGPTMAPPFRIPPSNAGPNFATNGVWTNGTTLPQQPQ
SALPPNAFPNNGIPWYPQNTQIPHQLSGPGMQFQQQLHPNQGPFLQAMFP
GILPNMFAQPMNALGLVGQNQMQFGLNTPFQQVQRPVFSAQQGFPSGELQ
SQGNLNLPSCTIPGPPPQFRPNASSNRGSRGGRTFRGAGRKGWRPSR
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mRNA from alignment at Chr_LG13-CM007373.1:3594158..3597083+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_06533_La_Tanjil_v1.0 ID=rna-TanjilR_06533_La_Tanjil_v1.0; Name=rna-TanjilR_06533; organism=Lupinus angustifolius; type=mRNA; length=2926bp; location=Sequence derived from: Chr_LG13-CM007373.1:3594158..3597083+ (Lupinus angustifolius
ATGGCTACCCAACACAATATCAATGGCAACAACTTCGAAGGGAATGGGAT
TGCACTTGCTACCCAGTTGGAATTGGAGCTTGACCCAAATTTGATTGGGG
CTAACTGGGTTGAAGAGTGTGAAAAGGTTGGGTCTTTTGATGTGGGTTAC
CCTATTGAAGAAGCGGTAGAGAAAATCAGTTTAGTTGATGGGTCTCAAAC
TTGTGTTACAACAACTCATGGGAATGGTAACAAAGATGAGACTAAAGATG
AGAGTAAAGATGAGATTAAAGATGAGAGTAAAGATAAGATTAAAGATGAG
attaaagatgaaaataaatCTGAGTCTGAATCTGATTCTGAAAGTGAAAG
TGAAGATTCAAGTTCTGAAGAAAGCAGTAGAAGTAGTAGCAGCAGTGACA
GTGACAGTGACAGTGACAGTGACAGTGATAGtgatagtgatgaagatgat
aagAAAAACAAAGGGGATGTTGAAGAAGGTGAGATTGAAGGttctgagga
tgaggatgacgatgatgatagCAAAGGCGGGGATAAGATGGTTACTTGTG
GCttggatgatgatgatattgatgttcttgaatttgatgaagatgatggt
gCAAAAGGAGAACCTATCAGGTCAAAAAATGAGCTTGaggtatttatttt
ttaaaattatctttcttatattattaatcaaatattaacattttacaaCA
CCACCACCGTGGTTCTTTTGTGAATTAGTTCCTGTATACCAATCTGTGGT
TCTTTTTCTGAATTTGTTCTTGCGTACAAATCCGTGTTTCTTTTGCGAAT
TTGTTCCTGAGAAGGAACGAGAATGAACCAGATTTTCATCTATAGTTTAA
gttaaagaaagaacaaaaaaaaagagtaattcTGTCATGTGTATTCACCT
ACATGATTGAGCTAtaacaaacaataaataattttatcatgtGGTATTTT
TCATATGGTGAAACAAAAGTTGTTTCGAACCTACAAGAAACAACATTAGA
AACAGCTGTGCATGGAGCTACAGAAACCCTATGACTATACCCCTAATGTA
CCGGTATTTGATGGGTAAAGTACCGTGTACTACCTACTCGTGCCAGTACC
GAAGATAACTGTGTATCACGTCATGTGACTATGAACACGACTCTATATGG
TCTCATAGTGTTTCATTAGGAATTACCAGCAGTGCAAGTGAAAGATGCAC
TTTATGCATATACTGAGTTGTTTGGTTTGTCTCACAATGCTTTTATTTGA
GTTCGGTTTGTTCTGAGAGGCTATTTCGTGCCAATTTTTGTCACACTAGT
TATATGTGGGCTGTCATTATTTGAGTCCTTGACTTTTTACTTCGAGACTA
TATTAGGAACCTAGAATTGAACGAAGTTTGGATGTGAGAAAATTTGCAAA
TCTCAACTGGATGAAATACACGTCACAAACTAAAGATGaagaataatttt
tattcaGTAATATCTTTAACTAAGTGTGTGGCTACTAGGCTAAGATGTGT
GTTattctacaaatttattttGCTTATTGGGCTTTCTTTTGAATGGTATA
AACTTTGCAGAATCTGCCTCCAGTTCCTCCAGTCGAGGTGACCTTAGAGC
CACACCATCAAGTGCAGCCTGTGGGAGTTGTTATGTCGGTAAGGTCAAAG
GACTCTCATCTCTAATCACAGAATTTGAGTAGACATTCTAGTACAGAGTT
TGTTTATTGCAAATTTAGTTTCTATAGCTGCTTTGTGAACCTCtgtctct
ttaaaaaaaattacgaTAATAATACGACCAGAGGAAATGGATCAGAACAG
GTTATAGATTATCGTTGAAATGAACTTACTTAAGATTCTCATTTTACAGA
TTGTTGGTGCTCAAGTTATTGTGGAAGGAGTAGAAAAGCACGAGCCTCTA
AATGAGGGTTCTATTCTCTGGATGACTGAAAACCGAAAACCACTAGGGTT
AGTTGATGAAATCTTTGGACCAGTCAAAACCCCTTACTATATAGTGAGAT
ACAATTCTGAAAGTGAAGTTCCCGAGGGTATCCACGCTGGAACTTTGATC
TCATTCGTTCCAGAATTTGCAGATTATGTGCTTAATAACAAGGATGTTTA
TAAGAAAGGGTACGATGCATCTGGTGCGAATGATGAAGAGTTGTCTGATG
AATATGAGTTTTCAGATGACGAGAAAGAGGCAGAGTACAGGAGAATGCAA
AGAACAGCGAAGAGAGACAAAACTGATCAAAATCAGGGCCAGAGAAAAAT
CAATAGAAAGAAATCTTCACCCAAACAGAATGTTGCCCCTTCCATCTCTG
GTACACCTGCACCGACATTGCCTGTTCATGGAAATTCTTCACCTTTTCCA
GGAAATTTGCAAAGACATTTTGGGGGACCTACTATGGCTCCACCGTTCCG
GATTCCACCCTCAAATGCAGGTCCTAACTTTGCAACAAATGGAGTTTGGA
CAAATGGGACAACACTCCCACAGCAGCCACAGTCTGCTCTGCCTCCTAAT
GCATTTCCTAACAATGGCATCCCATGGTACCCACAAAACACTCAAATTCC
TCATCAGTTGTCTGGGCCAGGAATGCAATTTCAACAGCAGTTACATCCCA
ATCAGGGACCTTTTTTGCAAGCCATGTTTCCTGGGATACTTCCCAATATG
TTTGCACAGCCCATGAATGCACTGGGGCTTGTTGGTCAAAACCAAATGCA
GTTTGGGTTGAACACACCCTTTCAACAGGTTCAGCGACCTGTATTTTCTG
CACAACAGGGTTTCCCATCTGGTGAATTGCAGTCTCAAGGAAACCTTAAT
TTGCCTTCCTGTACTATTCCAGGTCCCCCACCTCAATTTCGTCCTAACGC
ATCTTCTAATCGTGGTAGTCGTGGGGGGAGAACATTTCGTGGAGCGGGTA
GAAAAGGGTGGCGACCATCCAGGTGA
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Coding sequence (CDS) from alignment at Chr_LG13-CM007373.1:3594158..3597083+

>rna-TanjilR_06533_La_Tanjil_v1.0 ID=rna-TanjilR_06533_La_Tanjil_v1.0; Name=rna-TanjilR_06533; organism=Lupinus angustifolius; type=CDS; length=1794bp; location=Sequence derived from: Chr_LG13-CM007373.1:3594158..3597083+ (Lupinus angustifolius
ATGGCTACCCAACACAATATCAATGGCAACAACTTCGAAGGGAATGGGAT
TGCACTTGCTACCCAGTTGGAATTGGAGCTTGACCCAAATTTGATTGGGG
CTAACTGGGTTGAAGAGTGTGAAAAGGTTGGGTCTTTTGATGTGGGTTAC
CCTATTGAAGAAGCGGTAGAGAAAATCAGTTTAGTTGATGGGTCTCAAAC
TTGTGTTACAACAACTCATGGGAATGGTAACAAAGATGAGACTAAAGATG
AGAGTAAAGATGAGATTAAAGATGAGAGTAAAGATAAGATTAAAGATGAG
attaaagatgaaaataaatCTGAGTCTGAATCTGATTCTGAAAGTGAAAG
TGAAGATTCAAGTTCTGAAGAAAGCAGTAGAAGTAGTAGCAGCAGTGACA
GTGACAGTGACAGTGACAGTGACAGTGATAGtgatagtgatgaagatgat
aagAAAAACAAAGGGGATGTTGAAGAAGGTGAGATTGAAGGttctgagga
tgaggatgacgatgatgatagCAAAGGCGGGGATAAGATGGTTACTTGTG
GCttggatgatgatgatattgatgttcttgaatttgatgaagatgatggt
gCAAAAGGAGAACCTATCAGGTCAAAAAATGAGCTTGagAATCTGCCTCC
AGTTCCTCCAGTCGAGGTGACCTTAGAGCCACACCATCAAGTGCAGCCTG
TGGGAGTTGTTATGTCGATTGTTGGTGCTCAAGTTATTGTGGAAGGAGTA
GAAAAGCACGAGCCTCTAAATGAGGGTTCTATTCTCTGGATGACTGAAAA
CCGAAAACCACTAGGGTTAGTTGATGAAATCTTTGGACCAGTCAAAACCC
CTTACTATATAGTGAGATACAATTCTGAAAGTGAAGTTCCCGAGGGTATC
CACGCTGGAACTTTGATCTCATTCGTTCCAGAATTTGCAGATTATGTGCT
TAATAACAAGGATGTTTATAAGAAAGGGTACGATGCATCTGGTGCGAATG
ATGAAGAGTTGTCTGATGAATATGAGTTTTCAGATGACGAGAAAGAGGCA
GAGTACAGGAGAATGCAAAGAACAGCGAAGAGAGACAAAACTGATCAAAA
TCAGGGCCAGAGAAAAATCAATAGAAAGAAATCTTCACCCAAACAGAATG
TTGCCCCTTCCATCTCTGGTACACCTGCACCGACATTGCCTGTTCATGGA
AATTCTTCACCTTTTCCAGGAAATTTGCAAAGACATTTTGGGGGACCTAC
TATGGCTCCACCGTTCCGGATTCCACCCTCAAATGCAGGTCCTAACTTTG
CAACAAATGGAGTTTGGACAAATGGGACAACACTCCCACAGCAGCCACAG
TCTGCTCTGCCTCCTAATGCATTTCCTAACAATGGCATCCCATGGTACCC
ACAAAACACTCAAATTCCTCATCAGTTGTCTGGGCCAGGAATGCAATTTC
AACAGCAGTTACATCCCAATCAGGGACCTTTTTTGCAAGCCATGTTTCCT
GGGATACTTCCCAATATGTTTGCACAGCCCATGAATGCACTGGGGCTTGT
TGGTCAAAACCAAATGCAGTTTGGGTTGAACACACCCTTTCAACAGGTTC
AGCGACCTGTATTTTCTGCACAACAGGGTTTCCCATCTGGTGAATTGCAG
TCTCAAGGAAACCTTAATTTGCCTTCCTGTACTATTCCAGGTCCCCCACC
TCAATTTCGTCCTAACGCATCTTCTAATCGTGGTAGTCGTGGGGGGAGAA
CATTTCGTGGAGCGGGTAGAAAAGGGTGGCGACCATCCAGGTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR007504H/ACA_rnp_Gar1/Naf1
IPR038664Gar1/Naf1_Cbf5-bd_sf
IPR009000Transl_B-barrel_sf
Vocabulary: Biological Process
TermDefinition
GO:0001522pseudouridine synthesis
GO:0042254ribosome biogenesis