rna-TanjilR_19695
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_19695 vs. DB:Swiss
Match: OEP61_ARATH (Outer envelope protein 61 OS=Arabidopsis thaliana OX=3702 GN=OEP61 PE=1 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 2.124e-35 Identity = 92/197 (46.70%), Postives = 122/197 (61.93%), Query Frame = 1
Query: 3526 RSFQNFISNADPATLASLNTEQSKDLPPEMIRTASNMIGKMSPEELQKMLDMAASFQGDNPFARGSPDSPFNPGSIPPNVSPDMFKTASDMISKMPPDELQKMFEMASSLKGRESPSLSAVAKEERNVSQSNFPSSSTSGTNAFRE--------SSSFLDAFSNMRNASQPNFPSS-STDLQEQMRNQMKDPAMRQV 4089
R+FQNFIS DP TLA+L+ ++ D+ P+M +TAS+MIGKMSPEE+QKM+ A+SF+GDNPFA P +P P +PDM K ASDM+ KM P+E ++MF MASSLK +N P+S++ G E SS ++F R+ +P+ PS+ DLQEQMRNQMKDPAMRQ+
Sbjct: 287 RTFQNFISKTDPDTLAALSGGKAGDMSPDMFKTASSMIGKMSPEEIQKMVQTASSFKGDNPFA---PTAPSTENGFTP--TPDMLKLASDMMGKMSPEERERMFNMASSLK-------------------ANAPASTSYGNAEASEPRESLGASGSSSGNSFVAPRSGFEPSIPSAPPADLQEQMRNQMKDPAMRQM 459 HSP 2 Score: 120.168 bits (300), Expect = 1.661e-26 Identity = 73/151 (48.34%), Postives = 93/151 (61.59%), Query Frame = 1
Query: 1030 VELQMMSNPELMRMASESMKNMSSEDFKLAAEQLKHTRPEEMAQIGEKMANATPDEVAAMRARADAQIKYQLDAAEILKKQVSIWHKT*TVS-VCEKWIISTDISFLILRKYV*HEMNAG*KTKGEPGVSSIIPAVWPVCSLNEVLTSCVL 1479
++ QMMSNP+LM MA+ESMKNM ED K AAEQLKHTRPE+MA+I EKMA A+P+++AAMRA ADAQ YQ++AA++LKKQ + H S EK++ + + K P SS A+ CSLN L SC L
Sbjct: 29 IQQQMMSNPDLMNMATESMKNMRPEDLKQAAEQLKHTRPEDMAEISEKMAKASPEDIAAMRAHADAQFTYQINAAQMLKKQGNELHSRGNFSDAAEKYLRAKN------------------NLKEIP--SSKGGAILLACSLN--LMSCYL 157 HSP 3 Score: 82.8037 bits (203), Expect = 1.555e-14 Identity = 45/104 (43.27%), Postives = 54/104 (51.92%), Query Frame = 3
Query: 1761 QGNELHSQGKFNNALQKYLIVSALSLFALLRNNLAKLLETGKFFWSITVLPNFHFFIL*AKENIKEIPPFQSRKLLLACSLNLMSCYLKTRQYEECVKEGSEVF 2072
QGNELHS+G F++A +KYL AK N+KEIP + +LLACSLNLMSCYLKT Q+EEC+KEGSEV
Sbjct: 109 QGNELHSRGNFSDAAEKYLR---------------------------------------AKNNLKEIPSSKGGAILLACSLNLMSCYLKTNQHEECIKEGSEVL 173 HSP 4 Score: 81.6481 bits (200), Expect = 3.511e-14 Identity = 39/50 (78.00%), Postives = 48/50 (96.00%), Query Frame = 3
Query: 4320 QMFTSMIKNMSPEMMANMGEQFGVKLSKEDAAKAQQAMSSFSPESLDKMV 4469
QMFTSMIKNM+PEMMA+M EQFG+KLS+EDAAKAQQAM+S SP++L+KM+
Sbjct: 458 QMFTSMIKNMNPEMMASMSEQFGMKLSQEDAAKAQQAMASLSPDALEKMM 507 HSP 5 Score: 70.0922 bits (170), Expect = 1.236e-10 Identity = 29/47 (61.70%), Postives = 34/47 (72.34%), Query Frame = 3
Query: 5286 MLWADRVQRVVEGVKKTKNWLLGKPGMALAIFMLILAVLLHRLGYIG 5426
M WADR Q +E KK K WL GK G+ AI ML+LA++LHRLGYIG
Sbjct: 507 MRWADRAQTGMEKAKKAKKWLFGKGGLIFAILMLVLAMVLHRLGYIG 553 HSP 6 Score: 64.6994 bits (156), Expect = 6.332e-9 Identity = 33/76 (43.42%), Postives = 45/76 (59.21%), Query Frame = 1
Query: 2488 YDAKNLKALYRRGQAYKELGLLNVSYQ*LS*HLG*NCLLTIYHI*RHSCFFQDAVTDLSMALEVAPDDDTIAELLQ 2715
YDA+N+KALYRRGQAY++LGL F+DAV+DLS A EV+P+D+TIA++L+
Sbjct: 175 YDARNVKALYRRGQAYRDLGL-----------------------------FEDAVSDLSKAHEVSPEDETIADVLR 221 HSP 7 Score: 61.2326 bits (147), Expect = 8.092e-8 Identity = 25/33 (75.76%), Postives = 32/33 (96.97%), Query Frame = 1
Query: 1 MFNGMMDPEMLRIAQEQMSRMSPAELARIQQQV 99
MFNG+MDPEM+R+AQ+QMSRM+PA+ ARIQQQ+
Sbjct: 1 MFNGLMDPEMIRLAQDQMSRMTPADFARIQQQM 33 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_19695 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 1
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_19695_La_Tanjil_v1.0 ID=rna-TanjilR_19695_La_Tanjil_v1.0; Name=rna-TanjilR_19695; organism=Lupinus angustifolius; type=mRNA; length=5432bpback to top protein sequence of rna-TanjilR_19695_La_Tanjil_v1.0 >rna-TanjilR_19695_La_Tanjil_v1.0 ID=rna-TanjilR_19695_La_Tanjil_v1.0; Name=rna-TanjilR_19695_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=586bpback to top mRNA from alignment at Chr_LG13-CM007373.1:3900403..3905834+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_19695_La_Tanjil_v1.0 ID=rna-TanjilR_19695_La_Tanjil_v1.0; Name=rna-TanjilR_19695; organism=Lupinus angustifolius; type=mRNA; length=5432bp; location=Sequence derived from: Chr_LG13-CM007373.1:3900403..3905834+ (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG13-CM007373.1:3900403..3905834+ >rna-TanjilR_19695_La_Tanjil_v1.0 ID=rna-TanjilR_19695_La_Tanjil_v1.0; Name=rna-TanjilR_19695; organism=Lupinus angustifolius; type=CDS; length=1761bp; location=Sequence derived from: Chr_LG13-CM007373.1:3900403..3905834+ (Lupinus angustifoliusback to top |