rna-TanjilR_19692
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_19692 vs. DB:Swiss
Match: UBP8_ARATH (Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana OX=3702 GN=UBP8 PE=2 SV=2) HSP 1 Score: 125.561 bits (314), Expect = 3.003e-44 Identity = 61/91 (67.03%), Postives = 75/91 (82.42%), Query Frame = 3
Query: 6099 QGQYKSTLVCPVCRKVSVTFDPFMYLSLPLPSTAMRTMTLTVINSYIDGNSQISPYTISVPKNGRFQDLTRALSIACSLGADETILVAEVY 6371
QGQYKSTLVCP+C+KVSV FDPFMYLSLPLP T+MRTM LTV+++ DG+S P T++VPK G+F+DL +AL ACSL +ET+LV EVY
Sbjct: 428 QGQYKSTLVCPICKKVSVMFDPFMYLSLPLPCTSMRTMDLTVMSA--DGSSLPIPLTVNVPKFGKFEDLHKALVTACSLPEEETLLVTEVY 516 HSP 2 Score: 78.9518 bits (193), Expect = 3.003e-44 Identity = 34/57 (59.65%), Postives = 47/57 (82.46%), Query Frame = 2
Query: 6458 EARTVPQVYNNCIIRFLEDPSDSLSLIRDADRLIAYRFKKDNGDAPLVVFMNQRMEE 6628
E V +VYNN IIRFLE+P+DSL+LIRD D+L+ YR KKD ++PL+V+M+Q++EE
Sbjct: 508 ETLLVTEVYNNRIIRFLEEPTDSLTLIRDGDKLVVYRLKKDANNSPLIVYMHQKLEE 564 HSP 3 Score: 167.548 bits (423), Expect = 2.607e-40 Identity = 79/96 (82.29%), Postives = 83/96 (86.46%), Query Frame = 2
Query: 9314 YCPGCKKHRQASKKLDLWRLPEILVIHLKRFQYSRFMKNKLETYVDFPADNLDLSGYIAYGNDK-PYRYMLYAISNHYGSMGGGHYTAFVHVSATR 9598
YCPGCK+HRQA KKLDLWRLPEILVIHLKRF YSRFMKNKLE YVDFP DNLDLS YI+Y N + YRYMLYAISNHYGSMGGGHYTA+VH R
Sbjct: 744 YCPGCKEHRQAIKKLDLWRLPEILVIHLKRFSYSRFMKNKLEAYVDFPLDNLDLSSYISYKNGQTTYRYMLYAISNHYGSMGGGHYTAYVHHGGDR 839 HSP 4 Score: 156.762 bits (395), Expect = 7.312e-37 Identity = 107/199 (53.77%), Postives = 125/199 (62.81%), Query Frame = 1
Query: 4105 DIQIFLELQVYGLSDSLRCKEGKKDEIGSFXXXXXXXXXXXXXXX----XXXXLTYSSRPGAAXXXXXXXXXXXXXXCFMNSALQCLAHTPKLVDYFLDDYGKEINHDNPLGMNVCYHFSFISL*ILLQGTSVCA*DVFIFLLFTWYMLL*QGEIASAFGDLLRKLWVPGASPVAPRIFKLKLARFAPQFSGFNQHDSQ 4689
D +I LELQ+YGLSDS++ KE KK++ GS + + ++ NSL++ + G AG+LGLTGLQNLGNTCFMNS+LQCLAHTPKLVD+FL +Y KEIN DNPLGM +GEIA AFGDLLR LW PGAS VAPR FK KLARFAPQFSGFNQHDSQ
Sbjct: 212 DQEILLELQIYGLSDSIKLKESKKED-GSTQQTNGITNGMNGGTVFRFGRSNSLSFLGKAGEAGTLGLTGLQNLGNTCFMNSSLQCLAHTPKLVDFFLGEYSKEINLDNPLGM--------------------------------------KGEIALAFGDLLRSLWAPGASTVAPRTFKAKLARFAPQFSGFNQHDSQ 371 HSP 5 Score: 138.658 bits (348), Expect = 3.196e-31 Identity = 85/225 (37.78%), Postives = 122/225 (54.22%), Query Frame = 3
Query: 8142 FLHRNLAFDICIARQYVHGKLTPNWKAFGIPIVARLSNITDGFDLRNLYLKLLSPFQISTEETLGDFDVSKKTEETLLDFDVSKKTEETLGDFDVSKKTEEIAKSEGTRPPSLSPNVNGSDSPSDGGMEFYITDEKGTVKDSKILLNEPLAINGELKLLHVLVDWSDKQIQQYDTRLFNSLPEVFKYSFFTKKPQEPVSLYKCLEAFLQEEPLGPDDMWLVSIAK 8816
++H+ L Q++ GK +P WKAFGIP+V+RL ++ +G D+ NLYLKLLS F++ TE + + + E T + E DV + TE + D + Y+TD++G ++++L +P+ + K L+VL W K++ YDT L +SLPEV K TK+PQE VSL+KCLEAFL EEPLGPDDMW K
Sbjct: 557 YMHQKLE------EQFISGKSSPTWKAFGIPLVSRLCDVENGSDVENLYLKLLSSFKMPTEFFTENLENPTEEEATDKTDTDGTTSVEDTNSTDVKETTESLP---------------------DPVLRLYLTDDRGNSIEAEMLKEKPV---NKSKRLNVLARWPVKELDVYDTCLLSSLPEVSKSG--TKRPQESVSLFKCLEAFLTEEPLGPDDMWYCPGCK 749 HSP 6 Score: 105.145 bits (261), Expect = 7.430e-21 Identity = 59/89 (66.29%), Postives = 70/89 (78.65%), Query Frame = 2
Query: 404 YV*FSWWKDAQDSVPADSDETKGILYMALPGST--GPMKIINNIFSSDIVFNLRREKDLPXXXXXXXXXXSGRDFALVSGEMWLQALKW 664
+V WWKDAQDS+P++S E + ILY A GS+ GPMK+INNIF+SDI+F+LRRE D NGE GE VSGRDFALVS +MWLQALKW
Sbjct: 28 FVPLRWWKDAQDSMPSESVEKREILYTASCGSSYGGPMKLINNIFNSDILFDLRREGDALQNGETGEASVSGRDFALVSSDMWLQALKW 116 HSP 7 Score: 98.5969 bits (244), Expect = 6.678e-19 Identity = 43/50 (86.00%), Postives = 45/50 (90.00%), Query Frame = 2
Query: 4826 DGLHEDLNRVKRKPYAEVKDGDGRPDEEVADEYWHNHLARNDSIIVDLCQ 4975
DGLHEDLNRVK KPY E KDGDGRPD EVADEYW NH+ARNDSIIVD+CQ
Sbjct: 379 DGLHEDLNRVKNKPYVEAKDGDGRPDAEVADEYWRNHVARNDSIIVDVCQ 428 HSP 8 Score: 68.1662 bits (165), Expect = 1.251e-9 Identity = 37/73 (50.68%), Postives = 49/73 (67.12%), Query Frame = 2
Query: 9914 LSSYIVFCN*CSPS--LFYALAFH----------VFM*HGGDQWYDFDDSHVHPISKEKIKSGAAYVLFYRRV 10096
LSSYI + N + + YA++ H ++ HGGD+WYDFDDSHVH IS+EKIK+ AAYVLFY+R+
Sbjct: 797 LSSYISYKNGQTTYRYMLYAISNHYGSMGGGHYTAYVHHGGDRWYDFDDSHVHQISQEKIKTSAAYVLFYKRL 869
BLAST of rna-TanjilR_19692 vs. DB:Swiss
Match: UBP9_ARATH (Ubiquitin carboxyl-terminal hydrolase 9 OS=Arabidopsis thaliana OX=3702 GN=UBP9 PE=2 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 3.009e-32 Identity = 58/91 (63.74%), Postives = 69/91 (75.82%), Query Frame = 3
Query: 6099 QGQYKSTLVCPVCRKVSVTFDPFMYLSLPLPSTAMRTMTLTVINSYIDGNSQISPYTISVPKNGRFQDLTRALSIACSLGADETILVAEVY 6371
QGQYKSTLVCP C K+S+TFDPFMYLS+PLPST R+MT+TV Y DG+ PYT+ VPKNG +DL AL AC L DE++L+AEVY
Sbjct: 452 QGQYKSTLVCPACGKISITFDPFMYLSVPLPSTLTRSMTVTVF--YCDGSHLPMPYTVIVPKNGSIRDLITALGTACLLAEDESLLLAEVY 540 HSP 2 Score: 44.2838 bits (103), Expect = 3.009e-32 Identity = 28/95 (29.47%), Postives = 47/95 (49.47%), Query Frame = 2
Query: 6458 EARTVPQVYNNCIIRFLEDPSDSLSLIRDADRLIAYRF---KKDNGDAPLVVFMNQRMEE*VNTFDNLLVIFFRSFLVCYTNLE--LGCDMSLFL 6727
E+ + +VY++ I ++ E+P DSLS I+D + ++AYR K +G A L + + + + V F + V Y N E G D+ L
Sbjct: 532 ESLLLAEVYDHKIFKYFENPLDSLSSIKDDEHIVAYRLNQMPKGSGKAKLEILHGGQKRPILESVRGRDVKLFGTPFVTYVNTEPLSGADIDAVL 626 HSP 3 Score: 126.331 bits (316), Expect = 2.238e-27 Identity = 65/122 (53.28%), Postives = 72/122 (59.02%), Query Frame = 1
Query: 4324 CFMNSALQCLAHTPKLVDYFLDDYGKEINHDNPLGMNVCYHFSFISL*ILLQGTSVCA*DVFIFLLFTWYMLL*QGEIASAFGDLLRKLWVPGASPVAPRIFKLKLARFAPQFSGFNQHDSQ 4689
CFMNSALQCLAHTP +V+YFL DY +IN DNPLGM C GE+A AFGDLL+KLW G + VAPR FK KLARFAPQFSG+NQHDSQ
Sbjct: 312 CFMNSALQCLAHTPPIVEYFLQDYSDDINRDNPLGM--------------------C------------------GELAIAFGDLLKKLWSSGRNSVAPRAFKTKLARFAPQFSGYNQHDSQ 395 HSP 4 Score: 125.561 bits (314), Expect = 4.174e-27 Identity = 58/91 (63.74%), Postives = 76/91 (83.52%), Query Frame = 2
Query: 9314 YCPGCKKHRQASKKLDLWRLPEILVIHLKRFQYSRFMKNKLETYVDFPADNLDLSGYIAYGNDKPYRYMLYAISNHYGSMGGGHYTAFVHV 9586
+CP CK+HRQA+KKLDLW+LP+ILV HLKRF YSR++KNK++T+V+FP +LDLS Y+ ND+ Y Y LYA+SNHYG +GGGHYTA+ +
Sbjct: 769 FCPSCKEHRQANKKLDLWKLPDILVFHLKRFTYSRYLKNKIDTFVNFPVHDLDLSKYVKNKNDQSYLYELYAVSNHYGGLGGGHYTAYAKL 859 HSP 5 Score: 85.8853 bits (211), Expect = 4.954e-15 Identity = 37/50 (74.00%), Postives = 44/50 (88.00%), Query Frame = 2
Query: 4826 DGLHEDLNRVKRKPYAEVKDGDGRPDEEVADEYWHNHLARNDSIIVDLCQ 4975
DGLHEDLN+VKRKPY E+KD D RPD+EVA+E W+ H ARNDS+IVD+CQ
Sbjct: 403 DGLHEDLNKVKRKPYIELKDSDSRPDDEVAEELWNYHKARNDSVIVDVCQ 452 HSP 6 Score: 80.4925 bits (197), Expect = 2.609e-13 Identity = 48/111 (43.24%), Postives = 64/111 (57.66%), Query Frame = 3
Query: 8502 DSPSDGGMEF--YITDEKGTVKDSKILLNEPLAINGELKL---LHVLVDWSDKQIQQYDTRLFNSLPEVFKYSFFTKKP-QEPVSLYKCLEAFLQEEPLGPDDMWLVSIAK 8816
D SD + F ++TDE+G L +PL + L VLV+W++ + ++YD+ + LPEV K SF KK QE +SL+ CLEAFL EEPLGPDDMW K
Sbjct: 671 DDASDRELSFRIFLTDERG-------LNFKPLQSESSISLGIATRVLVEWNEGEHERYDSSYLSDLPEVHKTSFSAKKTRQESISLFSCLEAFLAEEPLGPDDMWFCPSCK 774
BLAST of rna-TanjilR_19692 vs. DB:Swiss
Match: UBP10_ARATH (Ubiquitin carboxyl-terminal hydrolase 10 OS=Arabidopsis thaliana OX=3702 GN=UBP10 PE=2 SV=2) HSP 1 Score: 119.783 bits (299), Expect = 6.422e-31 Identity = 58/91 (63.74%), Postives = 69/91 (75.82%), Query Frame = 3
Query: 6099 QGQYKSTLVCPVCRKVSVTFDPFMYLSLPLPSTAMRTMTLTVINSYIDGNSQISPYTISVPKNGRFQDLTRALSIACSLGADETILVAEVY 6371
QGQYKSTLVCPVC K+S+TFDPFMYLS+PLPST R+MT+TV Y DG+ PYT+ VPK G +DL AL AC L DE++L+AEVY
Sbjct: 453 QGQYKSTLVCPVCGKISITFDPFMYLSVPLPSTLTRSMTITVF--YCDGSRLPMPYTVIVPKQGSIRDLITALGTACCLAEDESLLLAEVY 541 HSP 2 Score: 40.4318 bits (93), Expect = 6.422e-31 Identity = 25/84 (29.76%), Postives = 42/84 (50.00%), Query Frame = 2
Query: 6458 EARTVPQVYNNCIIRFLEDPSDSLSLIRDADRLIAYRF---KKDNGDAPLVVFMNQRMEE*VNTFDNLLVIFFRSFLVCYTNLE 6700
E+ + +VY++ I R+ E P DSLS I+D + ++AYR K + A L + + +++ V F + V Y N E
Sbjct: 533 ESLLLAEVYDHKIFRYFEIPLDSLSAIKDDEHIVAYRLNQIPKGSRKAKLEILHGGQERAVLDSVRGSDVKLFGTPFVTYVNTE 616 HSP 3 Score: 125.946 bits (315), Expect = 2.959e-27 Identity = 65/122 (53.28%), Postives = 72/122 (59.02%), Query Frame = 1
Query: 4324 CFMNSALQCLAHTPKLVDYFLDDYGKEINHDNPLGMNVCYHFSFISL*ILLQGTSVCA*DVFIFLLFTWYMLL*QGEIASAFGDLLRKLWVPGASPVAPRIFKLKLARFAPQFSGFNQHDSQ 4689
CFMNSALQCLAHTP +V+YFL DY +IN DNPLGM C GE+A AFGDLL+KLW G + VAPR FK KLARFAPQFSG+NQHDSQ
Sbjct: 313 CFMNSALQCLAHTPPIVEYFLQDYSDDINRDNPLGM--------------------C------------------GELAIAFGDLLKKLWSSGRNAVAPRAFKTKLARFAPQFSGYNQHDSQ 396 HSP 4 Score: 122.094 bits (305), Expect = 4.849e-26 Identity = 57/91 (62.64%), Postives = 75/91 (82.42%), Query Frame = 2
Query: 9314 YCPGCKKHRQASKKLDLWRLPEILVIHLKRFQYSRFMKNKLETYVDFPADNLDLSGYIAYGNDKPYRYMLYAISNHYGSMGGGHYTAFVHV 9586
+CP CK+HRQA+KKLDLW+LP+ILV HLKRF YSR++KNK++T+V+FP +LDLS Y+ N + Y Y LYA+SNHYG +GGGHYTA+ +
Sbjct: 770 FCPSCKEHRQANKKLDLWKLPDILVFHLKRFTYSRYLKNKIDTFVNFPVHDLDLSKYVKNKNGQSYLYELYAVSNHYGGLGGGHYTAYAKL 860 HSP 5 Score: 85.8853 bits (211), Expect = 5.777e-15 Identity = 37/50 (74.00%), Postives = 44/50 (88.00%), Query Frame = 2
Query: 4826 DGLHEDLNRVKRKPYAEVKDGDGRPDEEVADEYWHNHLARNDSIIVDLCQ 4975
DGLHEDLN+VKRKPY E+KD D RPD+EVA+E W+ H ARNDS+IVD+CQ
Sbjct: 404 DGLHEDLNKVKRKPYIELKDSDSRPDDEVAEELWNYHKARNDSVIVDVCQ 453 HSP 6 Score: 80.4925 bits (197), Expect = 2.653e-13 Identity = 48/108 (44.44%), Postives = 66/108 (61.11%), Query Frame = 3
Query: 8502 DSPSDGGMEF--YITDEKGTVKDSKILLNEPLAINGELKLLHVLVDWSDKQIQQYDTRLFNSLPEVFKYSFFTKKP-QEPVSLYKCLEAFLQEEPLGPDDMWLVSIAK 8816
D+ SD + F ++TDE+G + K L +E G + VLV+W++ + ++YD+ + LPEV K SF KK QE +SL+ CLEAFL EEPLGPDDMW K
Sbjct: 672 DNASDRELSFRIFLTDERGL--NIKPLQSESSISPGTVT--RVLVEWNEGEHERYDSSYLSDLPEVHKTSFSAKKTRQESISLFSCLEAFLAEEPLGPDDMWFCPSCK 775
BLAST of rna-TanjilR_19692 vs. DB:Swiss
Match: UBP11_ARATH (Putative ubiquitin carboxyl-terminal hydrolase 11 OS=Arabidopsis thaliana OX=3702 GN=UBP11 PE=3 SV=2) HSP 1 Score: 120.168 bits (300), Expect = 1.001e-29 Identity = 60/96 (62.50%), Postives = 74/96 (77.08%), Query Frame = 3
Query: 6084 VDCFMQGQYKSTLVCPVCRKVSVTFDPFMYLSLPLPSTAMRTMTLTVINSYIDGNSQISPYTISVPKNGRFQDLTRALSIACSLGADETILVAEVY 6371
VD F QGQYKSTLVCP C K+S+TFDPFMYLSLPLPS+ R+MT+TV Y DG+ PYT++VPK+G +DL+ AL AC L DE++L+AEVY
Sbjct: 446 VDVF-QGQYKSTLVCPDCGKISITFDPFMYLSLPLPSSRTRSMTVTVF--YGDGSHLPMPYTVTVPKDGSCRDLSNALGTACCLDNDESLLLAEVY 538 HSP 2 Score: 35.8094 bits (81), Expect = 1.001e-29 Identity = 13/40 (32.50%), Postives = 29/40 (72.50%), Query Frame = 2
Query: 6458 EARTVPQVYNNCIIRFLEDPSDSLSLIRDADRLIAYRFKK 6577
E+ + +VY++ + ++ E+P + L+ I+D + ++AYRFK+
Sbjct: 530 ESLLLAEVYDHKVFKYYENPRELLNGIKDNEHIVAYRFKQ 569 HSP 3 Score: 120.939 bits (302), Expect = 8.509e-26 Identity = 62/122 (50.82%), Postives = 70/122 (57.38%), Query Frame = 1
Query: 4324 CFMNSALQCLAHTPKLVDYFLDDYGKEINHDNPLGMNVCYHFSFISL*ILLQGTSVCA*DVFIFLLFTWYMLL*QGEIASAFGDLLRKLWVPGASPVAPRIFKLKLARFAPQFSGFNQHDSQ 4689
CFMNS LQCLAHTP +V+YFL DY +IN NPLGM +GE+A AFG+LLRKLW G + VAPR FK KLARFAPQFSG+NQHDSQ
Sbjct: 310 CFMNSTLQCLAHTPPIVEYFLQDYRSDINAKNPLGM--------------------------------------RGELAIAFGELLRKLWSSGQNTVAPRAFKTKLARFAPQFSGYNQHDSQ 393 HSP 4 Score: 117.472 bits (293), Expect = 1.271e-24 Identity = 58/91 (63.74%), Postives = 73/91 (80.22%), Query Frame = 2
Query: 9314 YCPGCKKHRQASKKLDLWRLPEILVIHLKRFQYSRFMKNKLETYVDFPADNLDLSGYIAYGNDKPYRYMLYAISNHYGSMGGGHYTAFVHV 9586
YCPGCK+HRQA+KKLDLW+LP+ILV HLKRF YSR+ KNK++T V+F +LDLS Y+ + + Y Y LYAISNHYG +GGGHYTA+ +
Sbjct: 755 YCPGCKEHRQANKKLDLWKLPDILVFHLKRFTYSRYFKNKIDTLVNFHIHDLDLSKYVKNEDGQSYLYELYAISNHYGGLGGGHYTAYAKL 845 HSP 5 Score: 83.1889 bits (204), Expect = 3.580e-14 Identity = 37/50 (74.00%), Postives = 42/50 (84.00%), Query Frame = 2
Query: 4826 DGLHEDLNRVKRKPYAEVKDGDGRPDEEVADEYWHNHLARNDSIIVDLCQ 4975
DGLHEDLN+VKRKPY E KD DGRPD+EVA+E W H ARNDS+IVD+ Q
Sbjct: 401 DGLHEDLNKVKRKPYIEAKDSDGRPDDEVAEEKWKYHKARNDSVIVDVFQ 450 HSP 6 Score: 74.7146 bits (182), Expect = 1.514e-11 Identity = 34/65 (52.31%), Postives = 43/65 (66.15%), Query Frame = 3
Query: 8622 VLVDWSDKQIQQYDTRLFNSLPEVFKYSFFTKKPQEPVSLYKCLEAFLQEEPLGPDDMWLVSIAK 8816
VLV W++K+ ++YD+ N LP+V K K QE +SL+ CLEAFL EEPLGPDDMW K
Sbjct: 696 VLVKWNEKEHEKYDSSYLNDLPKVHKNVLAKKTMQEGISLFSCLEAFLAEEPLGPDDMWYCPGCK 760
BLAST of rna-TanjilR_19692 vs. DB:Swiss
Match: UBP5_ARATH (Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana OX=3702 GN=UBP5 PE=1 SV=2) HSP 1 Score: 131.724 bits (330), Expect = 4.332e-29 Identity = 62/103 (60.19%), Postives = 78/103 (75.73%), Query Frame = 2
Query: 9314 YCPGCKKHRQASKKLDLWRLPEILVIHLKRFQYSRFMKNKLETYVDFPADNLDLSGYIAYGN-DKPYRYMLYAISNHYGSMGGGHYTAFVHVSATRHSKYFIF 9619
+CP C + RQASKKLDLWRLPE+LVIHLKRF YSR MK+KLET+V+FP +LDL+ Y+A N +P Y LYA++NHYG MG GHYTA H+ S+++ F
Sbjct: 790 FCPQCNERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDLDLTKYVANKNLSQPQLYELYALTNHYGGMGSGHYTA--HIKLLDDSRWYNF 890 HSP 2 Score: 124.02 bits (310), Expect = 1.084e-26 Identity = 62/122 (50.82%), Postives = 70/122 (57.38%), Query Frame = 1
Query: 4324 CFMNSALQCLAHTPKLVDYFLDDYGKEINHDNPLGMNVCYHFSFISL*ILLQGTSVCA*DVFIFLLFTWYMLL*QGEIASAFGDLLRKLWVPGASPVAPRIFKLKLARFAPQFSGFNQHDSQ 4689
CFMNSA+QCL HTP+ YF +DY +EIN NPLGM GE+A AFGDLLRKLW PG +P+APR FK KLARFAPQFSG+NQHDSQ
Sbjct: 326 CFMNSAIQCLVHTPEFASYFQEDYHQEINWQNPLGM--------------------------------------VGELALAFGDLLRKLWAPGRTPIAPRPFKAKLARFAPQFSGYNQHDSQ 409 HSP 3 Score: 96.6709 bits (239), Expect = 1.689e-22 Identity = 50/90 (55.56%), Postives = 63/90 (70.00%), Query Frame = 3
Query: 6099 QGQYKSTLVCPVCRKVSVTFDPFMYLSLPLPSTAMRTMTLTVINSYIDGNSQISPYTISVPKNGRFQDLTRALSIACSLGADETILVAEV 6368
QGQYKSTLVCP+C KVSVTFDPFMYLSLPL R +T+TV + D + S T++V K GR +DL +AL+ ACSL E + +AE+
Sbjct: 466 QGQYKSTLVCPICNKVSVTFDPFMYLSLPLQFNTTRAITVTVFS--CDKTALPSTITVNVSKQGRCRDLIQALTNACSLKQSEELKLAEI 553 HSP 4 Score: 35.039 bits (79), Expect = 1.689e-22 Identity = 18/43 (41.86%), Postives = 24/43 (55.81%), Query Frame = 2
Query: 6455 SEARTVPQVYNNCIIRFLEDPSDSLSLIRDADRLIAYRFKKDN 6583
SE + ++ NN I R EDP LS I+D D L AY+ K +
Sbjct: 545 SEELKLAEIRNNFIHRLFEDPLIPLSSIKDDDHLAAYKLSKSS 587 HSP 5 Score: 93.2041 bits (230), Expect = 3.375e-17 Identity = 40/50 (80.00%), Postives = 44/50 (88.00%), Query Frame = 2
Query: 4826 DGLHEDLNRVKRKPYAEVKDGDGRPDEEVADEYWHNHLARNDSIIVDLCQ 4975
DGLHEDLNRVK KPY +D DGRPDEEVADE+W NH+ARNDSIIVD+CQ
Sbjct: 417 DGLHEDLNRVKHKPYINSRDADGRPDEEVADEFWKNHIARNDSIIVDVCQ 466 HSP 6 Score: 69.707 bits (169), Expect = 4.822e-10 Identity = 33/62 (53.23%), Postives = 41/62 (66.13%), Query Frame = 3
Query: 8622 VLVDWSDKQIQQYDTRLFNSLPEVFKYSFFTKKPQ-EPVSLYKCLEAFLQEEPLGPDDMWLV 8804
+ +DW+ + YD SLPEV KY TKK + EP+SLY CLEAFL+EEPL PD+MW
Sbjct: 730 IYLDWTPELSGMYDITCLESLPEVLKYGPTTKKARSEPLSLYACLEAFLREEPLVPDEMWFC 791
BLAST of rna-TanjilR_19692 vs. DB:Swiss
Match: UBP4_BOVIN (Ubiquitin carboxyl-terminal hydrolase 4 OS=Bos taurus OX=9913 GN=USP4 PE=2 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 1.439e-25 Identity = 51/89 (57.30%), Postives = 70/89 (78.65%), Query Frame = 2
Query: 9314 YCPGCKKHRQASKKLDLWRLPEILVIHLKRFQYSRFMKNKLETYVDFPADNLDLSGYIAYGNDKPYRYMLYAISNHYGSMGGGHYTAFV 9580
YCP CKKH+QA+KK DLW LP+ILV+HLKRF Y+R+ ++KL+T V+FP L++S ++ + +PY Y L A+SNHYG+MG GHYTA+
Sbjct: 798 YCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPVRGLNMSEFVCDPSARPYVYDLIAVSNHYGAMGVGHYTAYA 886 HSP 2 Score: 98.9821 bits (245), Expect = 6.171e-19 Identity = 52/123 (42.28%), Postives = 67/123 (54.47%), Query Frame = 1
Query: 4324 CFMNSALQCLAHTPKLVDYFL-DDYGKEINHDNPLGMNVCYHFSFISL*ILLQGTSVCA*DVFIFLLFTWYMLL*QGEIASAFGDLLRKLWVPGASPVAPRIFKLKLARFAPQFSGFNQHDSQ 4689
CFMNSALQCL++T L DYFL D+Y EIN DNPLGM +GEIA A+ +L++++W + VAPR+FK ++ RFAPQFSG+ Q DSQ
Sbjct: 311 CFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGM--------------------------------------KGEIAEAYAELIKQMWSGRDAHVAPRMFKTQVGRFAPQFSGYQQQDSQ 395 HSP 3 Score: 76.6406 bits (187), Expect = 3.468e-12 Identity = 34/47 (72.34%), Postives = 38/47 (80.85%), Query Frame = 2
Query: 4826 DGLHEDLNRVKRKPYAEVKDGDGRPDEEVADEYWHNHLARNDSIIVD 4966
DGLHEDLNRVK+KPY E+KD +GRPD VA E W NH RNDS+IVD
Sbjct: 403 DGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVD 449 HSP 4 Score: 70.8626 bits (172), Expect = 2.057e-10 Identity = 44/96 (45.83%), Postives = 57/96 (59.38%), Query Frame = 3
Query: 6084 VDCFMQGQYKSTLVCPVCRKVSVTFDPFMYLSLPLPSTAMRTMTLTVINSYIDGNSQISPYTISVPKNGRFQDLTRALSIACSLGADETILVAEVY 6371
VD F G +KSTLVCP C KVSVTFDPF YL+LPLP R M + ++ + D + + Y + VP G DL ALS + A E ++V +VY
Sbjct: 448 VDTF-HGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEIFLVPA--DPRCRPTQYRVVVPLMGAVSDLCEALSKLSGIAA-ENMVVTDVY 539
BLAST of rna-TanjilR_19692 vs. DB:Swiss
Match: UBP4_MOUSE (Ubiquitin carboxyl-terminal hydrolase 4 OS=Mus musculus OX=10090 GN=Usp4 PE=1 SV=3) HSP 1 Score: 119.783 bits (299), Expect = 2.162e-25 Identity = 51/89 (57.30%), Postives = 70/89 (78.65%), Query Frame = 2
Query: 9314 YCPGCKKHRQASKKLDLWRLPEILVIHLKRFQYSRFMKNKLETYVDFPADNLDLSGYIAYGNDKPYRYMLYAISNHYGSMGGGHYTAFV 9580
YCP CKKH+QA+KK DLW LP+ILV+HLKRF Y+R+ ++KL+T V+FP L++S ++ + +PY Y L A+SNHYG+MG GHYTA+
Sbjct: 797 YCPTCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPVRALNMSEFVCDRSARPYVYDLIAVSNHYGAMGVGHYTAYA 885 HSP 2 Score: 98.2117 bits (243), Expect = 9.183e-19 Identity = 66/188 (35.11%), Postives = 88/188 (46.81%), Query Frame = 1
Query: 4324 CFMNSALQCLAHTPKLVDYFL-DDYGKEINHDNPLGMNVCYHFSFISL*ILLQGTSVCA*DVFIFLLFTWYMLL*QGEIASAFGDLLRKLWVPGASPVAPRIFKLKLARFAPQFSGFNQHDSQVSASSSFILS-FHRFLSS-------------------------EDSFLRHASIVYDVFH--FKKT 4800
CFMNSALQCL++T L +YFL D+Y EIN DNPLGM +GEIA A+ +L++++W + VAPR+FK ++ RFAPQFSG+ Q DSQ +FIL H L+ E+ LR+ S++ D FH FK T
Sbjct: 311 CFMNSALQCLSNTAPLTEYFLKDEYEAEINRDNPLGM--------------------------------------KGEIAEAYAELIKQMWSGRDTHVAPRMFKTQVGRFAPQFSGYQQQDSQELL--AFILDGLHEDLNRVKKKPYLEPKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKST 458 HSP 3 Score: 75.485 bits (184), Expect = 7.675e-12 Identity = 34/47 (72.34%), Postives = 37/47 (78.72%), Query Frame = 2
Query: 4826 DGLHEDLNRVKRKPYAEVKDGDGRPDEEVADEYWHNHLARNDSIIVD 4966
DGLHEDLNRVK+KPY E KD +GRPD VA E W NH RNDS+IVD
Sbjct: 403 DGLHEDLNRVKKKPYLEPKDANGRPDAVVAKEAWENHRLRNDSVIVD 449 HSP 4 Score: 70.8626 bits (172), Expect = 2.091e-10 Identity = 45/98 (45.92%), Postives = 58/98 (59.18%), Query Frame = 3
Query: 6084 VDCFMQGQYKSTLVCPVCRKVSVTFDPFMYLSLPLPSTAMRTMTLTVINSYIDGNSQISP--YTISVPKNGRFQDLTRALSIACSLGADETILVAEVY 6371
VD F G +KSTLVCP C KVSVTFDPF YL+LPLP R M + ++ + + Q P Y ++VP G DL ALS + A E ++V +VY
Sbjct: 448 VDTF-HGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRIMEVFLVPA----DPQCRPIQYRVTVPLMGAISDLCEALSKLSGIAA-ENMVVTDVY 539
BLAST of rna-TanjilR_19692 vs. DB:Swiss
Match: UBP4_HUMAN (Ubiquitin carboxyl-terminal hydrolase 4 OS=Homo sapiens OX=9606 GN=USP4 PE=1 SV=3) HSP 1 Score: 119.398 bits (298), Expect = 2.915e-25 Identity = 51/89 (57.30%), Postives = 70/89 (78.65%), Query Frame = 2
Query: 9314 YCPGCKKHRQASKKLDLWRLPEILVIHLKRFQYSRFMKNKLETYVDFPADNLDLSGYIAYGNDKPYRYMLYAISNHYGSMGGGHYTAFV 9580
YCP CKKH+QA+KK DLW LP+ILV+HLKRF Y+R+ ++KL+T V+FP L++S ++ + +PY Y L A+SNHYG+MG GHYTA+
Sbjct: 798 YCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNLSARPYVYDLIAVSNHYGAMGVGHYTAYA 886 HSP 2 Score: 98.5969 bits (244), Expect = 7.068e-19 Identity = 52/123 (42.28%), Postives = 67/123 (54.47%), Query Frame = 1
Query: 4324 CFMNSALQCLAHTPKLVDYFL-DDYGKEINHDNPLGMNVCYHFSFISL*ILLQGTSVCA*DVFIFLLFTWYMLL*QGEIASAFGDLLRKLWVPGASPVAPRIFKLKLARFAPQFSGFNQHDSQ 4689
CFMNSALQCL++T L DYFL D+Y EIN DNPLGM +GEIA A+ +L++++W + VAPR+FK ++ RFAPQFSG+ Q DSQ
Sbjct: 311 CFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGM--------------------------------------KGEIAEAYAELIKQMWSGRDAHVAPRMFKTQVGRFAPQFSGYQQQDSQ 395 HSP 3 Score: 77.0258 bits (188), Expect = 3.004e-12 Identity = 34/47 (72.34%), Postives = 38/47 (80.85%), Query Frame = 2
Query: 4826 DGLHEDLNRVKRKPYAEVKDGDGRPDEEVADEYWHNHLARNDSIIVD 4966
DGLHEDLNRVK+KPY E+KD +GRPD VA E W NH RNDS+IVD
Sbjct: 403 DGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVD 449 HSP 4 Score: 74.3294 bits (181), Expect = 1.728e-11 Identity = 45/96 (46.88%), Postives = 60/96 (62.50%), Query Frame = 3
Query: 6084 VDCFMQGQYKSTLVCPVCRKVSVTFDPFMYLSLPLPSTAMRTMTLTVINSYIDGNSQISPYTISVPKNGRFQDLTRALSIACSLGADETILVAEVY 6371
VD F G +KSTLVCP C KVSVTFDPF YL+LPLP R M + ++ + D + + + Y ++VP G DL ALS + A E ++VA+VY
Sbjct: 448 VDTF-HGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEVFLVPA--DPHCRPTQYRVTVPLMGAVSDLCEALSRLSGIAA-ENMVVADVY 539
BLAST of rna-TanjilR_19692 vs. DB:Swiss
Match: UBP15_HUMAN (Ubiquitin carboxyl-terminal hydrolase 15 OS=Homo sapiens OX=9606 GN=USP15 PE=1 SV=3) HSP 1 Score: 119.398 bits (298), Expect = 3.008e-25 Identity = 57/89 (64.04%), Postives = 72/89 (80.90%), Query Frame = 2
Query: 9314 YCPGCKKHRQASKKLDLWRLPEILVIHLKRFQYSRFMKNKLETYVDFPADNLDLSGYIAYGNDKPYRYMLYAISNHYGSMGGGHYTAFV 9580
YCP CK+H+QA+KKLDLW LP +LV+HLKRF YSR+M++KL+T VDFP ++LD+S ++ N P RY L A+SNHYG MGGGHYTAF
Sbjct: 808 YCPNCKEHQQATKKLDLWSLPPVLVVHLKRFSYSRYMRDKLDTLVDFPINDLDMSEFLINPNAGPCRYNLIAVSNHYGGMGGGHYTAFA 896 HSP 2 Score: 92.0485 bits (227), Expect = 8.657e-17 Identity = 48/123 (39.02%), Postives = 66/123 (53.66%), Query Frame = 1
Query: 4324 CFMNSALQCLAHTPKLVDYFLDD-YGKEINHDNPLGMNVCYHFSFISL*ILLQGTSVCA*DVFIFLLFTWYMLL*QGEIASAFGDLLRKLWVPGASPVAPRIFKLKLARFAPQFSGFNQHDSQ 4689
CFMNSA+QCL++TP L +YFL+D Y +E+N DNPLGM +GEIA ++ +L++++W S V PR FK ++ RFAPQFSG+ Q D Q
Sbjct: 298 CFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGM--------------------------------------RGEIAKSYAELIKQMWSGKFSYVTPRAFKTQVGRFAPQFSGYQQQDCQ 382 HSP 3 Score: 80.4925 bits (197), Expect = 2.441e-13 Identity = 34/48 (70.83%), Postives = 42/48 (87.50%), Query Frame = 2
Query: 4826 DGLHEDLNRVKRKPYAEVKDGDGRPDEEVADEYWHNHLARNDSIIVDL 4969
DGLHEDLNR+++KPY ++KD DGRPD+ VA+E W NHL RNDSIIVD+
Sbjct: 390 DGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLKRNDSIIVDI 437 HSP 4 Score: 74.3294 bits (181), Expect = 1.729e-11 Identity = 46/109 (42.20%), Postives = 65/109 (59.63%), Query Frame = 3
Query: 6084 VDCFMQGQYKSTLVCPVCRKVSVTFDPFMYLSLPLPSTAMRTMTLTVINSYIDGNSQISPYTISVPKNGRFQDLTRALSIACSLGADETILVAEVY------LFSLNSN 6392
VD F G +KSTLVCP C K+SVTFDPF YL+LPLP RT+ + ++ +D ++ Y + VPK G DL ALS + AD+ I V ++Y +F+++ N
Sbjct: 435 VDIF-HGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYLVR--MDPLTKPMQYKVVVPKIGNILDLCTALSALSGIPADKMI-VTDIYNHRFHRIFAMDEN 539
BLAST of rna-TanjilR_19692 vs. DB:Swiss
Match: UBP15_BOVIN (Ubiquitin carboxyl-terminal hydrolase 15 OS=Bos taurus OX=9913 GN=USP15 PE=2 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 3.128e-25 Identity = 57/89 (64.04%), Postives = 72/89 (80.90%), Query Frame = 2
Query: 9314 YCPGCKKHRQASKKLDLWRLPEILVIHLKRFQYSRFMKNKLETYVDFPADNLDLSGYIAYGNDKPYRYMLYAISNHYGSMGGGHYTAFV 9580
YCP CK+H+QA+KKLDLW LP +LV+HLKRF YSR+M++KL+T VDFP ++LD+S ++ N P RY L A+SNHYG MGGGHYTAF
Sbjct: 779 YCPNCKEHQQATKKLDLWSLPPVLVVHLKRFSYSRYMRDKLDTLVDFPINDLDMSEFLINPNAGPCRYNLIAVSNHYGGMGGGHYTAFA 867 HSP 2 Score: 91.6633 bits (226), Expect = 1.111e-16 Identity = 48/123 (39.02%), Postives = 65/123 (52.85%), Query Frame = 1
Query: 4324 CFMNSALQCLAHTPKLVDYFLDD-YGKEINHDNPLGMNVCYHFSFISL*ILLQGTSVCA*DVFIFLLFTWYMLL*QGEIASAFGDLLRKLWVPGASPVAPRIFKLKLARFAPQFSGFNQHDSQ 4689
CFMNSA QCL++TP L +YFL+D Y +E+N DNPLGM +GEIA ++ +L++++W S V PR FK ++ RFAPQFSG+ Q D Q
Sbjct: 269 CFMNSAFQCLSNTPPLTEYFLNDKYQEELNFDNPLGM--------------------------------------RGEIAKSYAELIKQMWSGKYSYVTPRAFKTQVGRFAPQFSGYQQQDCQ 353 HSP 3 Score: 80.4925 bits (197), Expect = 2.657e-13 Identity = 34/48 (70.83%), Postives = 42/48 (87.50%), Query Frame = 2
Query: 4826 DGLHEDLNRVKRKPYAEVKDGDGRPDEEVADEYWHNHLARNDSIIVDL 4969
DGLHEDLNR+++KPY ++KD DGRPD+ VA+E W NHL RNDSIIVD+
Sbjct: 361 DGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLKRNDSIIVDI 408 HSP 4 Score: 75.0998 bits (183), Expect = 1.126e-11 Identity = 46/109 (42.20%), Postives = 66/109 (60.55%), Query Frame = 3
Query: 6084 VDCFMQGQYKSTLVCPVCRKVSVTFDPFMYLSLPLPSTAMRTMTLTVINSYIDGNSQISPYTISVPKNGRFQDLTRALSIACSLGADETILVAEVY------LFSLNSN 6392
VD F G +KSTLVCP C K+SVTFDPF YL+LPLP RT+ + ++ +D ++ Y + VPK G DL ALS+ + AD+ I V ++Y +F+++ N
Sbjct: 406 VDIF-HGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYLVR--MDPLTKPMQYKVVVPKIGNILDLCTALSLLSGVPADKMI-VTDIYNHRFHRIFAMDEN 510 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_19692 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_19692_La_Tanjil_v1.0 ID=rna-TanjilR_19692_La_Tanjil_v1.0; Name=rna-TanjilR_19692; organism=Lupinus angustifolius; type=mRNA; length=10108bpback to top protein sequence of rna-TanjilR_19692_La_Tanjil_v1.0 >rna-TanjilR_19692_La_Tanjil_v1.0 ID=rna-TanjilR_19692_La_Tanjil_v1.0; Name=rna-TanjilR_19692_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=891bpback to top mRNA from alignment at Chr_LG13-CM007373.1:3931035..3941142- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_19692_La_Tanjil_v1.0 ID=rna-TanjilR_19692_La_Tanjil_v1.0; Name=rna-TanjilR_19692; organism=Lupinus angustifolius; type=mRNA; length=10108bp; location=Sequence derived from: Chr_LG13-CM007373.1:3931035..3941142- (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG13-CM007373.1:3931035..3941142- >rna-TanjilR_19692_La_Tanjil_v1.0 ID=rna-TanjilR_19692_La_Tanjil_v1.0; Name=rna-TanjilR_19692; organism=Lupinus angustifolius; type=CDS; length=2676bp; location=Sequence derived from: Chr_LG13-CM007373.1:3931035..3941142- (Lupinus angustifoliusback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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