rna-TanjilR_19676

Transcript Overview
Namerna-TanjilR_19676
Unique Namerna-TanjilR_19676_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length1169
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG13-CM007373.1supercontigChr_LG13-CM007373.1:4109919..4111087 +Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananL075Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR241Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR255Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiR0309Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR0311Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR0344Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR0345Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaR0264Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR0269Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR0303Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
anccR0341Cajanus cajan Asha genome v1.0Cajanus cajan
ancrR0310Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ancrR0336Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
anpsR0273Pisum sativum Cameor genome v1aPisum sativum
anpvR0318Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR0326Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR0335Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anvuR0265Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR0284Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR0288Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anasR0293Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR0304Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR0344Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anzwsR0284Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anzwsR0305Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
antifR0262Vicia faba cv. Tiffany genome v1.0Vicia faba
antifR0266Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR0263Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
anvfhR0268Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
antifR0308Vicia faba cv. Tiffany genome v1.0Vicia faba
antifR0314Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR0310Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
anvfhR0313Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
anvssR0301Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvuaR0249Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvssR0307Vicia sativa cv. Studenica genome v1.0Vicia sativa
ancanR0239Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR0245Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR0268Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
anavjR0290Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0327Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
ancarR0263Cicer arietinum
ancarR0267Cicer arietinum
ancarR0304Cicer arietinum
anccaR0236Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR0254Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR0331Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR0336Vigna umbellata FF25 genome v1.0Vigna umbellata
anvvaR0283Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvvaR0303Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvasR0326Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvasR0331Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0325Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvstR0331Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anpvfR0317Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anvunR0251Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anpvfR0335Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anvunR0271Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anvunR0275Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
Phvul.011G131000.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-XM_004505442.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Vum_06G00779.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Vigst.06G121200.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
XM_058874453.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Ca_17131.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Psat07G0367200-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Ca_19869Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Vigun11g089300.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vigun11g089300.2Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Va08G047280.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
evm.model.Chr11.857Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
jg8482.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Cc_v2.0_09839.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
LR48_mrnaVigan08g095200Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vigan.06G117800.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Vfaba.Tiffany.R1.6g059800.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Vfaba.Hedin2.R1.6g074120.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Phvul.011G133000.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_19676gene-TanjilG_19676_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_19676rna-TanjilR_19676_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_19676_La_Tanjil_v1.0rna-TanjilR_19676_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_19676_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:4109919..4110056rna-TanjilR_19676_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:4109919..4110056Lupinus angustifoliusexon
rna-TanjilR_19676_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:4110143..4110187rna-TanjilR_19676_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:4110143..4110187Lupinus angustifoliusexon
rna-TanjilR_19676_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:4110692..4111087rna-TanjilR_19676_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:4110692..4111087Lupinus angustifoliusexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_19676_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:4109919..4110056rna-TanjilR_19676_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:4109919..4110056Lupinus angustifoliusCDS
rna-TanjilR_19676_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:4110143..4110187rna-TanjilR_19676_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:4110143..4110187Lupinus angustifoliusCDS
rna-TanjilR_19676_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:4110692..4111087rna-TanjilR_19676_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:4110692..4111087Lupinus angustifoliusCDS


Homology
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_19676 vs.
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 170..192

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_19676_La_Tanjil_v1.0 ID=rna-TanjilR_19676_La_Tanjil_v1.0; Name=rna-TanjilR_19676; organism=Lupinus angustifolius; type=mRNA; length=1169bp
ATGGAATCGCATGTGAAGCACAGTGCAATCTCCTCGAAGAAACGAACATC
GAAGAACGAAAAATTGTGCCTCGATGACTACCTTCCTTTTCTTCACTCTC
GCCAAACCATTCACCTCACCATGAATCAACTCAATCAGGTTTTAATTTCT
ACTTCATTCCTTTTCAGATTTCTCTCTGTTATTGTACTCTTTTTCTCTAA
CTAACCTTTTCTTCTTCGTTATAGATCATTCGTATTCACGGCTTCAAGAA
AATTCACCATGCTCCTAAGGTtctattctctctctctcactaaTTTTGAG
TTCTGTTTAGTTGCACAGAAAATGCTGGAAAGTAAGCTTACAAGACGTAT
AGATTCATAGATATTAGATAGATCATAATGCAAACTTCTGATATGGAAAG
TTGTCTCTGGCTTAGATTTTGTTCATTGATATTTTAGTCTTTTTTTGGTT
GTAGAGGAAATAGTGTCCGAACTACAAAGGATTGAGGTATTATGTTGCTT
TCACTCCTTCAATTTTGAATTCCTGTTTCGTTGCGGAGAAAATGTTAAAT
ATGGCGGGATTACCAATTTTCTATTTCTCCttgattttgtatttatttat
ctagATCTTAAATTAAAAGCTCATAAGTGATTTTAGAAGCTATAGATTGA
TAGATAGGTATATGATACTTAAACTTTTACTCTTATGAATCAGTCGCAAT
AGGAATTTGCTTTGGTTCATtattgtttagtagtttcaGTTGAAGAGATT
GCCAGTTTGTTTGCATTTAACAGAAGGTGTTAAGTGATGCCGTGGAAACG
CTGGATCTGGTTGATCTATCACGCTCCACACTCCGCGAAAATATTACTGC
ATTCGCGATTCTGTCACTAGAGGATGTGATTGCGGACCTCAGTGAACTCA
ACTGGCAAGAGTGTTGTGTTACCTCACTGGAGAAACTCAGCACCTGGAAC
GAGAGCTTCTCCCCTGGTTCCTCCAATCAGAAGAATACCACATTCCAACT
CGCGGATCATTCCACGTCACACAAAATCCATTTAACTCCCAAGACCCTTC
ACTTAACTCCCAGAAGTAGAATCCTAAAAGCCACAAAGATGGTGCCAAGG
CGTAAGAGAAGCAATATTCATGCTCGTGATGGCTCAACTGTGGATTCTGT
TTCACTCGCTTCATGCTGA
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protein sequence of rna-TanjilR_19676_La_Tanjil_v1.0

>rna-TanjilR_19676_La_Tanjil_v1.0 ID=rna-TanjilR_19676_La_Tanjil_v1.0; Name=rna-TanjilR_19676_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=192bp
MESHVKHSAISSKKRTSKNEKLCLDDYLPFLHSRQTIHLTMNQLNQIIRI
HGFKKIHHAPKKVLSDAVETLDLVDLSRSTLRENITAFAILSLEDVIADL
SELNWQECCVTSLEKLSTWNESFSPGSSNQKNTTFQLADHSTSHKIHLTP
KTLHLTPRSRILKATKMVPRRKRSNIHARDGSTVDSVSLASC
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mRNA from alignment at Chr_LG13-CM007373.1:4109919..4111087+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_19676_La_Tanjil_v1.0 ID=rna-TanjilR_19676_La_Tanjil_v1.0; Name=rna-TanjilR_19676; organism=Lupinus angustifolius; type=mRNA; length=1169bp; location=Sequence derived from: Chr_LG13-CM007373.1:4109919..4111087+ (Lupinus angustifolius
ATGGAATCGCATGTGAAGCACAGTGCAATCTCCTCGAAGAAACGAACATC
GAAGAACGAAAAATTGTGCCTCGATGACTACCTTCCTTTTCTTCACTCTC
GCCAAACCATTCACCTCACCATGAATCAACTCAATCAGGTTTTAATTTCT
ACTTCATTCCTTTTCAGATTTCTCTCTGTTATTGTACTCTTTTTCTCTAA
CTAACCTTTTCTTCTTCGTTATAGATCATTCGTATTCACGGCTTCAAGAA
AATTCACCATGCTCCTAAGGTtctattctctctctctcactaaTTTTGAG
TTCTGTTTAGTTGCACAGAAAATGCTGGAAAGTAAGCTTACAAGACGTAT
AGATTCATAGATATTAGATAGATCATAATGCAAACTTCTGATATGGAAAG
TTGTCTCTGGCTTAGATTTTGTTCATTGATATTTTAGTCTTTTTTTGGTT
GTAGAGGAAATAGTGTCCGAACTACAAAGGATTGAGGTATTATGTTGCTT
TCACTCCTTCAATTTTGAATTCCTGTTTCGTTGCGGAGAAAATGTTAAAT
ATGGCGGGATTACCAATTTTCTATTTCTCCttgattttgtatttatttat
ctagATCTTAAATTAAAAGCTCATAAGTGATTTTAGAAGCTATAGATTGA
TAGATAGGTATATGATACTTAAACTTTTACTCTTATGAATCAGTCGCAAT
AGGAATTTGCTTTGGTTCATtattgtttagtagtttcaGTTGAAGAGATT
GCCAGTTTGTTTGCATTTAACAGAAGGTGTTAAGTGATGCCGTGGAAACG
CTGGATCTGGTTGATCTATCACGCTCCACACTCCGCGAAAATATTACTGC
ATTCGCGATTCTGTCACTAGAGGATGTGATTGCGGACCTCAGTGAACTCA
ACTGGCAAGAGTGTTGTGTTACCTCACTGGAGAAACTCAGCACCTGGAAC
GAGAGCTTCTCCCCTGGTTCCTCCAATCAGAAGAATACCACATTCCAACT
CGCGGATCATTCCACGTCACACAAAATCCATTTAACTCCCAAGACCCTTC
ACTTAACTCCCAGAAGTAGAATCCTAAAAGCCACAAAGATGGTGCCAAGG
CGTAAGAGAAGCAATATTCATGCTCGTGATGGCTCAACTGTGGATTCTGT
TTCACTCGCTTCATGCTGA
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Coding sequence (CDS) from alignment at Chr_LG13-CM007373.1:4109919..4111087+

>rna-TanjilR_19676_La_Tanjil_v1.0 ID=rna-TanjilR_19676_La_Tanjil_v1.0; Name=rna-TanjilR_19676; organism=Lupinus angustifolius; type=CDS; length=579bp; location=Sequence derived from: Chr_LG13-CM007373.1:4109919..4111087+ (Lupinus angustifolius
ATGGAATCGCATGTGAAGCACAGTGCAATCTCCTCGAAGAAACGAACATC
GAAGAACGAAAAATTGTGCCTCGATGACTACCTTCCTTTTCTTCACTCTC
GCCAAACCATTCACCTCACCATGAATCAACTCAATCAGATCATTCGTATT
CACGGCTTCAAGAAAATTCACCATGCTCCTAAGAAGGTGTTAAGTGATGC
CGTGGAAACGCTGGATCTGGTTGATCTATCACGCTCCACACTCCGCGAAA
ATATTACTGCATTCGCGATTCTGTCACTAGAGGATGTGATTGCGGACCTC
AGTGAACTCAACTGGCAAGAGTGTTGTGTTACCTCACTGGAGAAACTCAG
CACCTGGAACGAGAGCTTCTCCCCTGGTTCCTCCAATCAGAAGAATACCA
CATTCCAACTCGCGGATCATTCCACGTCACACAAAATCCATTTAACTCCC
AAGACCCTTCACTTAACTCCCAGAAGTAGAATCCTAAAAGCCACAAAGAT
GGTGCCAAGGCGTAAGAGAAGCAATATTCATGCTCGTGATGGCTCAACTG
TGGATTCTGTTTCACTCGCTTCATGCTGA
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