rna-TanjilR_19671
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_19671 vs. DB:Swiss
Match: ASIL2_ARATH (Trihelix transcription factor ASIL2 OS=Arabidopsis thaliana OX=3702 GN=ASIL2 PE=1 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 1.267e-28 Identity = 67/121 (55.37%), Postives = 82/121 (67.77%), Query Frame = 1 Query: 79 REDCWTEDATFTLIDAWGEHYLDLNRGNLRQKHWQEVXXXXXXXXXXXXXXXXXXKKKCPRRTDVQCKNRIDTLKKKYKIEKARVSDSAGGYESPWPFFSRLDALIGDNFPIKKFSPPATS 441
REDCW+E AT LIDAWGE YL+L+RGNL+QKHW+EVA+ V++R K P +TD+QCKNRIDT+KKKYK EK R+++ GG S W FF +LD LIG I P ATS
Sbjct: 80 REDCWSEAATAVLIDAWGERYLELSRGNLKQKHWKEVAEIVSSREDYG---------KIP-KTDIQCKNRIDTVKKKYKQEKVRIAN--GGGRSRWVFFDKLDRLIGSTAKI----PTATS 184 HSP 2 Score: 72.7886 bits (177), Expect = 6.369e-13 Identity = 33/60 (55.00%), Postives = 48/60 (80.00%), Query Frame = 1 Query: 727 YRELANAIERFGEIYERVESVKQIQMVELEKQRMQFAKDLEYQRMQLFMETQLQLHKVKR 906
+REL AI RFGE YE+ E+ K Q+VE+EK+RM+F K+LE QRMQ F++TQL++ ++K+
Sbjct: 350 WRELTRAIMRFGEAYEQTENAKLQQVVEMEKERMKFLKELELQRMQFFVKTQLEISQLKQ 409
BLAST of rna-TanjilR_19671 vs. DB:Swiss
Match: ASIL1_ARATH (Trihelix transcription factor ASIL1 OS=Arabidopsis thaliana OX=3702 GN=ASIL1 PE=1 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.067e-15 Identity = 50/108 (46.30%), Postives = 74/108 (68.52%), Query Frame = 1 Query: 79 REDCWTEDATFTLIDAWGEHYLDLNRGNLRQKHWQEVXXXXXXXXXXXXXXXXXXKKKCP-RRTDVQCKNRIDTLKKKYKIEKARVSDSAGGYESPWPFFSRLDALIG 399
R+DCW+E+AT LI+AWG+ + + +G L+Q+HW+EVA+ VN ++C +TD+QCKNRIDT+KKKYK EKA++ ++G S W FF +L++LIG
Sbjct: 90 RDDCWSEEATKVLIEAWGDRFSEPGKGTLKQQHWKEVAEIVNKS------------RQCKYPKTDIQCKNRIDTVKKKYKQEKAKI--ASGDGPSKWVFFKKLESLIG 183 HSP 2 Score: 55.0694 bits (131), Expect = 3.925e-7 Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = 1 Query: 739 ANAIERFGEIYERVESVKQIQMVELEKQRMQFAKDLEYQRMQLFMETQLQL 891
A AI F E YE+ E+ K M ELEK+RM+FAK++E QRMQ F++TQL++
Sbjct: 298 ARAILGFTEAYEKAETAKLKLMAELEKERMKFAKEMELQRMQ-FLKTQLEI 347 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_19671 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 2 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_19671_La_Tanjil_v1.0 ID=rna-TanjilR_19671_La_Tanjil_v1.0; Name=rna-TanjilR_19671; organism=Lupinus angustifolius; type=mRNA; length=1005bpback to top protein sequence of rna-TanjilR_19671_La_Tanjil_v1.0 >rna-TanjilR_19671_La_Tanjil_v1.0 ID=rna-TanjilR_19671_La_Tanjil_v1.0; Name=rna-TanjilR_19671_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=334bpback to top mRNA from alignment at Chr_LG13-CM007373.1:4166567..4167571- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_19671_La_Tanjil_v1.0 ID=rna-TanjilR_19671_La_Tanjil_v1.0; Name=rna-TanjilR_19671; organism=Lupinus angustifolius; type=mRNA; length=1005bp; location=Sequence derived from: Chr_LG13-CM007373.1:4166567..4167571- (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG13-CM007373.1:4166567..4167571- >rna-TanjilR_19671_La_Tanjil_v1.0 ID=rna-TanjilR_19671_La_Tanjil_v1.0; Name=rna-TanjilR_19671; organism=Lupinus angustifolius; type=CDS; length=1005bp; location=Sequence derived from: Chr_LG13-CM007373.1:4166567..4167571- (Lupinus angustifoliusback to top |