rna-TanjilR_19664

Transcript Overview


Name	rna-TanjilR_19664
Unique Name	rna-TanjilR_19664_La_Tanjil_v1.0
Type	mRNA
Organism	Lupinus angustifolius (blue lupin)
Sequence length	441
Product	hypothetical protein

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr_LG13-CM007373.1	supercontig	Chr_LG13-CM007373.1:4252539..4252979 -	Lupinus angustifolius L. Tanjil genome v1.0	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Lupinus angustifolius L. Tanjil genome v1.0	2019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.0	2020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot	2020-01-28

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
ananL075	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ananR241	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ananR255	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ancaiR0309	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
ancaiR0311	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
ancaiR0344	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
ancaiR0345	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
ancaR0264	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ancaR0303	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ancrR0310	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
ancrR0352	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
anpsR0273	Pisum sativum Cameor genome v1a	Pisum sativum
anpvR0318	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
anpvR0335	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
anvuR0265	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
anvuR0266	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
anvuR0284	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
anasR0304	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
anasR0344	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
anzwsR0284	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
anzwsR0305	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
antifR0262	Vicia faba cv. Tiffany genome v1.0	Vicia faba
anvfhR0263	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
antifR0308	Vicia faba cv. Tiffany genome v1.0	Vicia faba
antifR0309	Vicia faba cv. Tiffany genome v1.0	Vicia faba
anvssR0292	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
anvssR0301	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
anvuaR0249	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
anvuaR0250	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
anvssR0307	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
anvuaR0268	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
ancanR0239	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
ancanR0268	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
anavjR0290	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
anavjR0292	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
anavjR0327	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
ancarR0267		Cicer arietinum
ancarR0304		Cicer arietinum
anccaR0236	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
anccaR0254	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
anvumR0331	Vigna umbellata FF25 genome v1.0	Vigna umbellata
anvumR0336	Vigna umbellata FF25 genome v1.0	Vigna umbellata
anvvaR0302	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
anvasR0326	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
anvasR0331	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
anvstR0325	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
anvstR0331	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
anvunR0251	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
anvunR0252	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
anvunR0271	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
rna-TanjilR_02978	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
gene-TanjilG_19664	gene-TanjilG_19664_La_Tanjil_v1.0	Lupinus angustifolius	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_19664	rna-TanjilR_19664_La_Tanjil_v1.0-protein	Lupinus angustifolius	polypeptide
rna-TanjilR_19664_La_Tanjil_v1.0	rna-TanjilR_19664_La_Tanjil_v1.0	Lupinus angustifolius	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_19664_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:4252539..4252979	rna-TanjilR_19664_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:4252539..4252979	Lupinus angustifolius	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_19664_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:4252539..4252979	rna-TanjilR_19664_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:4252539..4252979	Lupinus angustifolius	exon

Homology

The following BLAST results are available for this feature:

BLAST of rna-TanjilR_19664 vs.

BLAST of rna-TanjilR_19664 vs.
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Chr_LG13-CM007373.1:4252539..4252979-
coding sequence from alignment at Chr_LG13-CM007373.1:4252539..4252979-

mRNA sequence

>rna-TanjilR_19664_La_Tanjil_v1.0 ID=rna-TanjilR_19664_La_Tanjil_v1.0; Name=rna-TanjilR_19664; organism=Lupinus angustifolius; type=mRNA; length=441bp
ATGGGTAATAGAAACTCAACAAGTTCAAAATCAAAGGTATATTATGGGCC
AAGATCAAAGATTGGTTCAAGTGAATTAACACAACATGTTCCTAGGACAA
AGGCTGAACCTGTTGTAGTGGTGGGTTTTCCAACAGATGAAGGTTCCTTG
AGGTTGAAGGGTCACTCAGAACATGGTAAGAAATCAACATCACTTGATAG
TGATGATACTTTCACTGAGTTCATTCGACGTGCTAAGTATAAAATCAGAA
CAATCTCAAACATTGGTCGTGAGCAGAGTAACATTGCACCAGCATCAGCA
TTAGATGGGGCTAATATTAATGTTACTAACAATAGTAATGATGAAAATCA
GAAGGACCAGTTTGGAGATTTTATTAAGGTTGCTAAGAAGAAGTTGAAAA
CTACATCAAGGGTTGGAAACAATAGCTCCTTCAGAGGTTGA

protein sequence of rna-TanjilR_19664_La_Tanjil_v1.0

>rna-TanjilR_19664_La_Tanjil_v1.0 ID=rna-TanjilR_19664_La_Tanjil_v1.0; Name=rna-TanjilR_19664_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=146bp
MGNRNSTSSKSKVYYGPRSKIGSSELTQHVPRTKAEPVVVVGFPTDEGSL
RLKGHSEHGKKSTSLDSDDTFTEFIRRAKYKIRTISNIGREQSNIAPASA
LDGANINVTNNSNDENQKDQFGDFIKVAKKKLKTTSRVGNNSSFRG

mRNA from alignment at Chr_LG13-CM007373.1:4252539..4252979-

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna-TanjilR_19664_La_Tanjil_v1.0 ID=rna-TanjilR_19664_La_Tanjil_v1.0; Name=rna-TanjilR_19664; organism=Lupinus angustifolius; type=mRNA; length=441bp; location=Sequence derived from: Chr_LG13-CM007373.1:4252539..4252979- (Lupinus angustifolius
ATGGGTAATAGAAACTCAACAAGTTCAAAATCAAAGGTATATTATGGGCC
AAGATCAAAGATTGGTTCAAGTGAATTAACACAACATGTTCCTAGGACAA
AGGCTGAACCTGTTGTAGTGGTGGGTTTTCCAACAGATGAAGGTTCCTTG
AGGTTGAAGGGTCACTCAGAACATGGTAAGAAATCAACATCACTTGATAG
TGATGATACTTTCACTGAGTTCATTCGACGTGCTAAGTATAAAATCAGAA
CAATCTCAAACATTGGTCGTGAGCAGAGTAACATTGCACCAGCATCAGCA
TTAGATGGGGCTAATATTAATGTTACTAACAATAGTAATGATGAAAATCA
GAAGGACCAGTTTGGAGATTTTATTAAGGTTGCTAAGAAGAAGTTGAAAA
CTACATCAAGGGTTGGAAACAATAGCTCCTTCAGAGGTTGA

Coding sequence (CDS) from alignment at Chr_LG13-CM007373.1:4252539..4252979-

>rna-TanjilR_19664_La_Tanjil_v1.0 ID=rna-TanjilR_19664_La_Tanjil_v1.0; Name=rna-TanjilR_19664; organism=Lupinus angustifolius; type=CDS; length=441bp; location=Sequence derived from: Chr_LG13-CM007373.1:4252539..4252979- (Lupinus angustifolius
ATGGGTAATAGAAACTCAACAAGTTCAAAATCAAAGGTATATTATGGGCC
AAGATCAAAGATTGGTTCAAGTGAATTAACACAACATGTTCCTAGGACAA
AGGCTGAACCTGTTGTAGTGGTGGGTTTTCCAACAGATGAAGGTTCCTTG
AGGTTGAAGGGTCACTCAGAACATGGTAAGAAATCAACATCACTTGATAG
TGATGATACTTTCACTGAGTTCATTCGACGTGCTAAGTATAAAATCAGAA
CAATCTCAAACATTGGTCGTGAGCAGAGTAACATTGCACCAGCATCAGCA
TTAGATGGGGCTAATATTAATGTTACTAACAATAGTAATGATGAAAATCA
GAAGGACCAGTTTGGAGATTTTATTAAGGTTGCTAAGAAGAAGTTGAAAA
CTACATCAAGGGTTGGAAACAATAGCTCCTTCAGAGGTTGA

Search form

rna-TanjilR_19664