rna-TanjilR_19664

Transcript Overview
Namerna-TanjilR_19664
Unique Namerna-TanjilR_19664_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length441
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG13-CM007373.1supercontigChr_LG13-CM007373.1:4252539..4252979 -Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananL075Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR241Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR255Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiR0309Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR0311Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR0344Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR0345Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaR0264Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR0303Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancrR0310Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ancrR0352Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
anpsR0273Pisum sativum Cameor genome v1aPisum sativum
anpvR0318Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR0335Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anvuR0265Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR0266Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR0284Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anasR0304Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR0344Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anzwsR0284Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anzwsR0305Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
antifR0262Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR0263Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
antifR0308Vicia faba cv. Tiffany genome v1.0Vicia faba
antifR0309Vicia faba cv. Tiffany genome v1.0Vicia faba
anvssR0292Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR0301Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvuaR0249Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvuaR0250Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvssR0307Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvuaR0268Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ancanR0239Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR0268Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
anavjR0290Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0292Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0327Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
ancarR0267Cicer arietinum
ancarR0304Cicer arietinum
anccaR0236Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR0254Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR0331Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR0336Vigna umbellata FF25 genome v1.0Vigna umbellata
anvvaR0302Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvasR0326Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvasR0331Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0325Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvstR0331Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvunR0251Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anvunR0252Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anvunR0271Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-TanjilR_02978Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_19664gene-TanjilG_19664_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_19664rna-TanjilR_19664_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_19664_La_Tanjil_v1.0rna-TanjilR_19664_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_19664_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:4252539..4252979rna-TanjilR_19664_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:4252539..4252979Lupinus angustifoliusCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_19664_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:4252539..4252979rna-TanjilR_19664_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:4252539..4252979Lupinus angustifoliusexon


Homology
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_19664 vs.
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 47..67
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 50..67
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..33

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_19664_La_Tanjil_v1.0 ID=rna-TanjilR_19664_La_Tanjil_v1.0; Name=rna-TanjilR_19664; organism=Lupinus angustifolius; type=mRNA; length=441bp
ATGGGTAATAGAAACTCAACAAGTTCAAAATCAAAGGTATATTATGGGCC
AAGATCAAAGATTGGTTCAAGTGAATTAACACAACATGTTCCTAGGACAA
AGGCTGAACCTGTTGTAGTGGTGGGTTTTCCAACAGATGAAGGTTCCTTG
AGGTTGAAGGGTCACTCAGAACATGGTAAGAAATCAACATCACTTGATAG
TGATGATACTTTCACTGAGTTCATTCGACGTGCTAAGTATAAAATCAGAA
CAATCTCAAACATTGGTCGTGAGCAGAGTAACATTGCACCAGCATCAGCA
TTAGATGGGGCTAATATTAATGTTACTAACAATAGTAATGATGAAAATCA
GAAGGACCAGTTTGGAGATTTTATTAAGGTTGCTAAGAAGAAGTTGAAAA
CTACATCAAGGGTTGGAAACAATAGCTCCTTCAGAGGTTGA
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protein sequence of rna-TanjilR_19664_La_Tanjil_v1.0

>rna-TanjilR_19664_La_Tanjil_v1.0 ID=rna-TanjilR_19664_La_Tanjil_v1.0; Name=rna-TanjilR_19664_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=146bp
MGNRNSTSSKSKVYYGPRSKIGSSELTQHVPRTKAEPVVVVGFPTDEGSL
RLKGHSEHGKKSTSLDSDDTFTEFIRRAKYKIRTISNIGREQSNIAPASA
LDGANINVTNNSNDENQKDQFGDFIKVAKKKLKTTSRVGNNSSFRG
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mRNA from alignment at Chr_LG13-CM007373.1:4252539..4252979-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_19664_La_Tanjil_v1.0 ID=rna-TanjilR_19664_La_Tanjil_v1.0; Name=rna-TanjilR_19664; organism=Lupinus angustifolius; type=mRNA; length=441bp; location=Sequence derived from: Chr_LG13-CM007373.1:4252539..4252979- (Lupinus angustifolius
ATGGGTAATAGAAACTCAACAAGTTCAAAATCAAAGGTATATTATGGGCC
AAGATCAAAGATTGGTTCAAGTGAATTAACACAACATGTTCCTAGGACAA
AGGCTGAACCTGTTGTAGTGGTGGGTTTTCCAACAGATGAAGGTTCCTTG
AGGTTGAAGGGTCACTCAGAACATGGTAAGAAATCAACATCACTTGATAG
TGATGATACTTTCACTGAGTTCATTCGACGTGCTAAGTATAAAATCAGAA
CAATCTCAAACATTGGTCGTGAGCAGAGTAACATTGCACCAGCATCAGCA
TTAGATGGGGCTAATATTAATGTTACTAACAATAGTAATGATGAAAATCA
GAAGGACCAGTTTGGAGATTTTATTAAGGTTGCTAAGAAGAAGTTGAAAA
CTACATCAAGGGTTGGAAACAATAGCTCCTTCAGAGGTTGA
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Coding sequence (CDS) from alignment at Chr_LG13-CM007373.1:4252539..4252979-

>rna-TanjilR_19664_La_Tanjil_v1.0 ID=rna-TanjilR_19664_La_Tanjil_v1.0; Name=rna-TanjilR_19664; organism=Lupinus angustifolius; type=CDS; length=441bp; location=Sequence derived from: Chr_LG13-CM007373.1:4252539..4252979- (Lupinus angustifolius
ATGGGTAATAGAAACTCAACAAGTTCAAAATCAAAGGTATATTATGGGCC
AAGATCAAAGATTGGTTCAAGTGAATTAACACAACATGTTCCTAGGACAA
AGGCTGAACCTGTTGTAGTGGTGGGTTTTCCAACAGATGAAGGTTCCTTG
AGGTTGAAGGGTCACTCAGAACATGGTAAGAAATCAACATCACTTGATAG
TGATGATACTTTCACTGAGTTCATTCGACGTGCTAAGTATAAAATCAGAA
CAATCTCAAACATTGGTCGTGAGCAGAGTAACATTGCACCAGCATCAGCA
TTAGATGGGGCTAATATTAATGTTACTAACAATAGTAATGATGAAAATCA
GAAGGACCAGTTTGGAGATTTTATTAAGGTTGCTAAGAAGAAGTTGAAAA
CTACATCAAGGGTTGGAAACAATAGCTCCTTCAGAGGTTGA
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