rna-TanjilR_16774
|
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_16774 vs. DB:Swiss
Match: TR120_ARATH (Trafficking protein particle complex II-specific subunit 120 homolog OS=Arabidopsis thaliana OX=3702 GN=TRS120 PE=1 SV=1) HSP 1 Score: 414.846 bits (1065), Expect = 1.699e-131 Identity = 221/327 (67.58%), Postives = 254/327 (77.68%), Query Frame = 3
Query: 8061 ALSTFISGPLKSSGDPPTDGSNVPPGRRLVVPLQICVLQGLSFVKAQLLSMEFPANVGENLPKLDGVNNVFNDGLVDSETKMDRLVKIDPFRGSWGLRFLELELSNPTDVAFEIDVSVKLENSSSEDNHFSDQDATEYGYPKTRIDRDCSSRVLVPLEHFKLPVLDDSFFIKDTRADGISGGRNASFSEKNTKAELNACIKNLISRIKVQWHSGRNSSGELNIKDAIQAALQTSVMDVLLPDPLTFGFRLVRNGFKSEKPDPEIESKNVESPAASKGSVLAHEMTPMEVLVRNNTKDVIKMSLNITCRDVAGENCVEGTKATVLWTG 9041
+L +GPL ++GD S VPPGRRLVVPLQICVLQGLSFVKA+LLSME PA+V +NL D ++ E+ D LVKI+PFRGSWGLRFLELELSNPTDV FEI V V+LENS+ ED+ QD+ EY YPKTRIDRD S+RVL+PLEHFKLPVLD SFF KD S RN SFSEKNTKAE+N IKNLIS+IKV+W SGRNSSGEL+IKDAIQ ALQT+VMDVLLPDPLTFGFRLVRNG + DPE ++ ESP SKGSVL+HE+TPMEVLVRNNT + IK++L++TCRDVAG+NC EG ATVLW G
Sbjct: 804 SLLIHYAGPLSNNGDSQEKESIVPPGRRLVVPLQICVLQGLSFVKARLLSMEIPAHVSDNL----------RDEDIERESNADSLVKINPFRGSWGLRFLELELSNPTDVVFEISVFVQLENSAKEDDSSPVQDSPEYEYPKTRIDRDYSARVLIPLEHFKLPVLDGSFFTKDPPPGSPSSSRNPSFSEKNTKAEINTLIKNLISKIKVRWQSGRNSSGELDIKDAIQTALQTTVMDVLLPDPLTFGFRLVRNGLEK---DPETKA---ESP-FSKGSVLSHEVTPMEVLVRNNTSEAIKLNLSVTCRDVAGQNCTEGADATVLWAG 1113 HSP 2 Score: 81.2629 bits (199), Expect = 1.699e-131 Identity = 46/68 (67.65%), Postives = 57/68 (83.82%), Query Frame = 1
Query: 9145 ITMEIPPLQQIKHSFCLHFLVPGEYTLXXXXXXXXXXXXLRARARTSSAAEPIFCRGPPYHVRVLGTA 9348
I+ME+ PLQ+ +H F L FLVPGEYT+VAAAVI+DA+++LRARA T+S EPIFCRGPP+HV V G A
Sbjct: 1118 ISMEVAPLQEARHCFSLFFLVPGEYTMVAAAVIEDANNVLRARAGTASPNEPIFCRGPPFHVCVAGGA 1185 HSP 3 Score: 429.098 bits (1102), Expect = 2.143e-124 Identity = 228/301 (75.75%), Postives = 254/301 (84.39%), Query Frame = 2
Query: 6602 RLHSFPLHPIQMDIVKRNPAREDWWVGSAPSGPFIYTPFSKGEPNNIKKRELIWIVGEPVQVLVELANPCGFDLRVDSIYLSVHSGNFDAFPVSVSLLPNSSKVITLSGIPTSVGPVTIPGCIVHCFGVITEHLFREVDNLLLGAAQGLVLSDPFRCCGSPKLKNXXXXXXXXXXXXXXXXXXXXGGDAAIVLYEGEIRDVWITLANAGTVPIEQAHISLSGKNQDSVISYSCETLKSHLPLKPGAEVTFPVTLKAWQVGLVDADT--GAGKTFSGTNMRRSKDGSSPSLLIHYAGTVFEN 7498
RL SFPLH Q+DIVKRNPAREDWW GSAPSGPFIYTPFSKG+ N K+ELIW+VGEPVQVLVELANPC FDLR+DSIYLS HS NFDAFPVSV + PNS+KVITLSGIPT+VGPVTIPGC VHCFGVITEH+FR+VDNLLLGAAQGLV SDPFR CGS KL++V VPNISV P LPLLV+ VVGGD AI+LYEGEIR+V I ANAGTVPI QAH+SLSGKNQD+VIS + E L+S LPLKPGA+VT PVTLKAW VG D+D +G+ +G N R KDG+SPSLLIHYAG + N
Sbjct: 517 RLFSFPLHSSQVDIVKRNPAREDWWTGSAPSGPFIYTPFSKGDANESSKQELIWVVGEPVQVLVELANPCCFDLRIDSIYLSAHSSNFDAFPVSVDIPPNSAKVITLSGIPTAVGPVTIPGCTVHCFGVITEHVFRDVDNLLLGAAQGLVFSDPFRSCGSAKLRHVFVPNISVAPPLPLLVANVVGGDGAIILYEGEIREVCINFANAGTVPIVQAHVSLSGKNQDAVISIADEALQSALPLKPGAQVTLPVTLKAWHVGPTDSDNTMSSGRNAAG-NTGRPKDGTSPSLLIHYAGPLSNN 816 HSP 4 Score: 214.542 bits (545), Expect = 2.260e-54 Identity = 96/138 (69.57%), Postives = 119/138 (86.23%), Query Frame = 1
Query: 1 MEPEVSIEGSSMIQVAVIPIGSLPPNVVRDYYSMLLPLHTIPLSSIRSFYTQHHKSPFSHQPWDSGSLRFKFVLAGAPPSPWDDFQSHRKTLAVIGILHCPSSPDLDHVMDLFTASCKPYNSSLVHRCFAFSPNDSQV 414
MEP+VSIE S+I++AV+PIG++PP ++RDY+SMLL HTI LS+I SFYT+H KSPF++QPWDSGSLRFKFVL G+PPSPW+DFQS+RK LAVIG+ HCPSSPDLD V + F +CK Y+S+LV RCFAFSP DSQ+
Sbjct: 1 MEPDVSIETLSIIRIAVLPIGTIPPTLLRDYHSMLLRHHTIALSAISSFYTEHQKSPFTNQPWDSGSLRFKFVLGGSPPSPWEDFQSNRKMLAVIGLCHCPSSPDLDSVTEKFNVACKSYSSALVRRCFAFSPGDSQL 138 HSP 5 Score: 200.29 bits (508), Expect = 5.893e-50 Identity = 105/163 (64.42%), Postives = 114/163 (69.94%), Query Frame = 1
Query: 1033 LEEGGKKEGNLRLFPPADRATLEFHLNTMMQELAAYLLMEFEKWVLQAESSGTIIKTPLDSQASLSSEEVHL*VFFISNNATYMCLVFKIRCL**V*LDSFLVLVEMQVIKAKKRRLGRAQKTIGDFCLLAGSPVDANAHYSTALELARLTADYFWYAGALEG 1521
LE+G KK NL LFPP+D+ T EFHL TMMQ++AA LLMEFEKWVLQAES+GTI+KTPLDSQASL+SEEV IKAKKRRLGRAQKTIGD+ LLAGSPVDANAHYSTALELARLT DYFWYAGALEG
Sbjct: 138 LEDGDKKGENLILFPPSDKQTQEFHLQTMMQDIAASLLMEFEKWVLQAESAGTILKTPLDSQASLNSEEV---------------------------------------IKAKKRRLGRAQKTIGDYSLLAGSPVDANAHYSTALELARLTGDYFWYAGALEG 261 HSP 6 Score: 159.458 bits (402), Expect = 1.898e-37 Identity = 77/97 (79.38%), Postives = 91/97 (93.81%), Query Frame = 1
Query: 4522 RRELAKEVVELLTTAADGARSLIDASDKLILYIEIARLYGSLGYQRKAAFFSRQVAQLYLQEENRLAAISAMQVLAMTTKAYHVQSRSSISDNSLHN 4812
RRELAKEVVELLT AADGA+SLIDASD+LILY+E+ARL+G+LGYQRKAAFF RQVAQLYLQ++NRLAAISAMQVL+MTT AY +QSR+S+S S++N
Sbjct: 324 RRELAKEVVELLTNAADGAKSLIDASDRLILYVEVARLFGALGYQRKAAFFCRQVAQLYLQQDNRLAAISAMQVLSMTTDAYRIQSRASMSKVSVNN 420 HSP 7 Score: 158.303 bits (399), Expect = 4.477e-37 Identity = 75/91 (82.42%), Postives = 82/91 (90.11%), Query Frame = 1
Query: 5740 DNGKISHQSAVPLFESQWSTLQMVVLREILLSAVRAGDPLTAWSAAARLLRSYYPLITPAGQNGLANALSNSAERLPPGTRCADPALPFIR 6012
D GK+ H S V LFES WSTLQMVVLREILLSAVRAGDPL AWSAAARLLR +YPLITP+GQNGLAN+L+NSA+RLP GTRCADPALPF+R
Sbjct: 427 DAGKMHHHSIVSLFESHWSTLQMVVLREILLSAVRAGDPLAAWSAAARLLRWHYPLITPSGQNGLANSLANSADRLPSGTRCADPALPFVR 517
BLAST of rna-TanjilR_16774 vs. DB:Swiss
Match: TR120_ORYSJ (Trafficking protein particle complex II-specific subunit 120 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=TRS120 PE=2 SV=1) HSP 1 Score: 390.578 bits (1002), Expect = 2.279e-111 Identity = 207/296 (69.93%), Postives = 244/296 (82.43%), Query Frame = 2
Query: 6599 FRLHSFPLHPIQMDIVKRNPAREDWWVGSAPSGPFIYTPFSKGEPNNIKKRELIWIVGEPVQVLVELANPCGFDLRVDSIYLSVHSGNFDAFPVSVSLLPNSSKVITLSGIPTSVGPVTIPGCIVHCFGVITEHLFREVDNLLLGAAQGLVLSDPFRCCGSPKLKNXXXXXXXXXXXXXXXXXXXXGGDAAIVLYEGEIRDVWITLANAGTVPIEQAHISLSGKNQDSVISYSCETLKSHLPLKPGAEVTFPVTLKAWQVGLVDADTGAGKTFSGTNMRR-SKDGSSPSLLIHYAG 7483
RLHSFPLHP Q +IVKRNP +++WW G PSGPFIYTPF+KG + K+E+ WIVGEPVQV+VELANPC FDL V+SIYLSVHSGNFDAFPVSV+L PN+SK++ LSGIPT VG V+IPGCIVHCFGVITEHLF+EVD LLLGAAQGLVLSDPFRCCGS K K+V+ P+ISVVP LPLLV+ VVGGD +I+LYEGEIRDV ITL NAGTVP+E+A+++LSGKNQDSVIS + T KS LP+KPG EVTF VTL+AW + D + + S N RR +++GS+P L IHYAG
Sbjct: 502 IRLHSFPLHPSQREIVKRNPNKKEWWTGGGPSGPFIYTPFTKGGTSGTSKQEVNWIVGEPVQVMVELANPCSFDLIVESIYLSVHSGNFDAFPVSVNLPPNTSKLVLLSGIPTQVGQVSIPGCIVHCFGVITEHLFKEVDCLLLGAAQGLVLSDPFRCCGSSKFKSVNFPSISVVPPLPLLVANVVGGDGSILLYEGEIRDVLITLTNAGTVPVEEANVALSGKNQDSVISIAHSTWKSALPIKPGGEVTFAVTLRAWHLSPTDLEADGSR--SPANSRRIAREGSNPFLDIHYAG 795 HSP 2 Score: 320.857 bits (821), Expect = 2.390e-88 Identity = 186/363 (51.24%), Postives = 240/363 (66.12%), Query Frame = 3
Query: 8055 NNALSTFISGPLKSSGDPPTDGSNVPPGRRLVVPLQICVLQGLSFVKAQLLSMEFPANVGE-NLPKLDGVNNVFNDGLVDSETKMDRLVKIDPFRGSWGLRFLELELSNPTDVAFEIDVSVKLENSSSEDNHFSDQDATEYGYPKTRIDRDCSSRVLVPLEHFKLPVLDDSFFIKDTRADGISGGRNASFSEKNTKAELNACIKNLISRIKVQWHSGRNSSGELNIKDAIQAALQTSVMDVLLPDPLTFGFRLVRNGF-----KSEKPDPEIESKNVESPAASKGSVLAHEMTPMEVLVRNNTKDVIKMSLNITCRDVAGENCVEGTKATVLWTGNF*FFCLLS*IDIYSYLT*YIVFPYSIF 9125
N L +GP SG+ ++ ++PPGRRLVVPL ICV+QG+ V+A+LLSME PA + +L + +N+ N D+ L+KIDP++GSW LR LELEL NPTDV F++DVSV L+ +S E + KTRIDRD S+RVL+PLEHFKLPVLD SFF+K+ +D G R A+ +EKN KAELNA I NLIS+IKV+WHSGRNSSGELNIKDAIQ ALQ S+MD+LLPDPLTF FR ++G S++P ES K + A+EMT MEV +RNNTK+ I+M+L+I+C+DVAGENC + ATVLW G +LS I + +V P+SI+
Sbjct: 786 NPFLDIHYAGP---SGNSESNDVSLPPGRRLVVPLNICVVQGMRLVRARLLSMELPARFTDAHLRSVSSKDNLSNGS--DAIRNDISLLKIDPYKGSWDLRLLELELFNPTDVVFDVDVSVHLDGTSVEQKILPEDKTASSACHKTRIDRDYSARVLIPLEHFKLPVLDTSFFVKENGSDEPLGSRAATLAEKNAKAELNASINNLISKIKVKWHSGRNSSGELNIKDAIQTALQASIMDILLPDPLTFSFRHAKDGTTAKTDSSKEPGDGSSRSADESVLRCKDPIFANEMTHMEVQIRNNTKETIRMNLSISCKDVAGENCFDENSATVLWAG------VLSDIYLEVQPLQEVVHPFSIY 1137 HSP 3 Score: 177.178 bits (448), Expect = 7.756e-43 Identity = 90/158 (56.96%), Postives = 107/158 (67.72%), Query Frame = 1
Query: 1048 KKEGNLRLFPPADRATLEFHLNTMMQELAAYLLMEFEKWVLQAESSGTIIKTPLDSQASLSSEEVHL*VFFISNNATYMCLVFKIRCL**V*LDSFLVLVEMQVIKAKKRRLGRAQKTIGDFCLLAGSPVDANAHYSTALELARLTADYFWYAGALEG 1521
KK N+ +FPP+D+ +LE H+ TM+Q+L+A LLMEFEKWVL+AES+GTI+KTPLDSQ+SL SEEV IKAKKRRLGRAQK IGD+CLLAGSP DANAHY+TA+ELARLT D FW+AGALEG
Sbjct: 142 KKRDNIIMFPPSDQQSLELHMLTMIQDLSASLLMEFEKWVLRAESTGTILKTPLDSQSSLGSEEV---------------------------------------IKAKKRRLGRAQKIIGDYCLLAGSPADANAHYATAIELARLTGDVFWHAGALEG 260 HSP 4 Score: 158.688 bits (400), Expect = 3.913e-37 Identity = 74/139 (53.24%), Postives = 96/139 (69.06%), Query Frame = 1
Query: 1 MEPEVSIEGSSMIQVAVIPIGS-LPPNVVRDYYSMLLPLHTIPLSSIRSFYTQHHKSPFSHQPWDSGSLRFKFVLAGAPPSPWDDFQSHRKTLAVIGILHCPSSPDLDHVMDLFTASCKPYNSSLVHRCFAFSPNDSQV 414
MEP VSIE S I+VAV+P+G + P +RDY +++ + L+S+R +Y++H KSPF+HQPW G LR KFVL G PSPW+DFQS RK LAV+GI H PSSPDL V F + + Y S+L RCFAF P D+Q+
Sbjct: 1 MEPGVSIESGSAIRVAVLPVGGPISPARLRDYAALVARHARVDLASLRPYYSEHQKSPFAHQPWGGGCLRLKFVLGGCVPSPWEDFQSSRKVLAVVGICHLPSSPDLGRVAADFVDAARSYPSALASRCFAFCPTDAQL 139 HSP 5 Score: 145.591 bits (366), Expect = 3.298e-33 Identity = 69/91 (75.82%), Postives = 82/91 (90.11%), Query Frame = 1
Query: 5749 KISH---QSAVPLFESQWSTLQMVVLREILLSAVRAGDPLTAWSAAARLLRSYYPLITPAGQNGLANALSNSAERLPPGTRCADPALPFIR 6012
K+ H +S V LFESQWSTLQMVVLREIL+S++RA DPL++WSAAARLLRS+YPLITPAGQ+GLA++LSNSA++LP GTRCADP LPFIR
Sbjct: 413 KMDHGLLKSVVSLFESQWSTLQMVVLREILMSSIRAADPLSSWSAAARLLRSFYPLITPAGQSGLASSLSNSADKLPSGTRCADPCLPFIR 503 HSP 6 Score: 138.658 bits (348), Expect = 4.389e-31 Identity = 67/89 (75.28%), Postives = 79/89 (88.76%), Query Frame = 1
Query: 4522 RRELAKEVVELLTTAADGARSLIDASDKLILYIEIARLYGSLGYQRKAAFFSRQVAQLYLQEENRLAAISAMQVLAMTTKAYHVQSRSS 4788
RR+ AKEV +LL AADGA++LIDASD+LILYIEIARL+G+LGY+RKAAFFSRQVAQLYLQ++N AA+SAMQVL TT AYHVQSR +
Sbjct: 323 RRQCAKEVSDLLMGAADGAKALIDASDRLILYIEIARLFGTLGYKRKAAFFSRQVAQLYLQQDNAYAAMSAMQVLTTTTTAYHVQSRKT 411 HSP 7 Score: 77.0258 bits (188), Expect = 3.208e-12 Identity = 40/69 (57.97%), Postives = 55/69 (79.71%), Query Frame = 1
Query: 9142 DITMEIPPLQQIKHSFCLHFLVPGEYTLXXXXXXXXXXXXLRARARTSSAAEPIFCRGPPYHVRVLGTA 9348
DI +E+ PLQ++ H F ++FLVPG+Y+L AA+VI DA+D+LRARA+ S EPI CRG P+H+ V+GTA
Sbjct: 1119 DIYLEVQPLQEVVHPFSIYFLVPGDYSLQAASVIIDATDVLRARAKAESPDEPILCRGSPFHIHVVGTA 1187
BLAST of rna-TanjilR_16774 vs. DB:Swiss
Match: TPPC9_MOUSE (Trafficking protein particle complex subunit 9 OS=Mus musculus OX=10090 GN=Trappc9 PE=1 SV=2) HSP 1 Score: 84.7297 bits (208), Expect = 1.197e-14 Identity = 68/234 (29.06%), Postives = 117/234 (50.00%), Query Frame = 2
Query: 6698 PFIYTPF---SKGEPNNIKKRELIWIVGEPVQVLVELANPCGFDLRVDSIYLSVHSGNFDAFPVSVSLLPNSSKV--ITLSGIPTSVGPVTIPGCIVHCFGVITEHLFREVDNLLLGAAQGLVLSDPFRCCGSPKLKNXXXXXXXXXXXXXXXXXXXXGGDAAIVLYEGEIRDVWITLANAGTVPIEQAHIS---LSGKNQ--DSVISYSCETLKSHLPLKPGAEVTFPVTLKA 7369
PFIY+P ++GE N KK + W+ G+ +V + + NP F+LRV+++ L F++ P ++S LP S + +TL G+P + G +T+ G FGV ++ L + L G + V+ P+L+ +S SL + + ++ LY GE + + +TL N G P+EQ ++ L+ K + +S+ E + PL+PG TF + +KA
Sbjct: 570 PFIYSPIIAHNRGEERN-KKIDFQWVQGDVCEVQLMVYNPMPFELRVENMGLLTSGVEFESLPAALS-LPAESGLYPVTLVGVPQTTGMITVNGYHTTVFGVFSDCLLDNLPGLKTGGSTVEVIP------ALPRLQ-ISTSLPRSARSLQPSAGDEIATNVSVQLYNGETQQLAVTLENIGLEPLEQLEVTSKLLTTKEKLYGDFLSWKLEETLAQFPLQPGKVATFTINIKA 794
BLAST of rna-TanjilR_16774 vs. DB:Swiss
Match: TPPC9_HUMAN (Trafficking protein particle complex subunit 9 OS=Homo sapiens OX=9606 GN=TRAPPC9 PE=1 SV=2) HSP 1 Score: 76.6406 bits (187), Expect = 4.253e-12 Identity = 63/232 (27.16%), Postives = 112/232 (48.28%), Query Frame = 2
Query: 6698 PFIYTPF---SKGEPNNIKKRELIWIVGEPVQVLVELANPCGFDLRVDSIYLSVHSGNFDAFPVSVSLLPNSSKV-ITLSGIPTSVGPVTIPGCIVHCFGVITEHLFREVDNLLLGAAQGLVLSDPFRCCGSPKLKNXXXXXXXXXXXXXXXXXXXXGGDAAIVLYEGEIRDVWITLANAGTVPIEQAHIS---LSGKNQ--DSVISYSCETLKSHLPLKPGAEVTFPVTLK 7366
PFIY+P ++GE N KK + W+ G+ +V + + NP F+LRV+++ L F++ P ++SL S +TL G+P + G +T+ G FGV ++ L + + + V+ P+L+ +S SL + + ++ LY GE + + I L N G P+E+ ++ L+ K + +S+ E + PL+PG TF + +K
Sbjct: 570 PFIYSPIIAHNRGEERN-KKIDFQWVQGDVCEVQLMVYNPMPFELRVENMGLLTSGVEFESLPAALSLPAESGLYPVTLVGVPQTTGTITVNGYHTTVFGVFSDCLLDNLPGIKTSGSTVEVIP------ALPRLQ-ISTSLPRSAHSLQPSSGDEISTNVSVQLYNGESQQLIIKLENIGMEPLEKLEVTSKVLTTKEKLYGDFLSWKLEETLAQFPLQPGKVATFTINIK 793
BLAST of rna-TanjilR_16774 vs. DB:Swiss
Match: TPPC9_BOVIN (Trafficking protein particle complex subunit 9 OS=Bos taurus OX=9913 GN=TRAPPC9 PE=1 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 5.989e-12 Identity = 63/233 (27.04%), Postives = 115/233 (49.36%), Query Frame = 2
Query: 6698 PFIYTPF---SKGEPNNIKKRELIWIVGEPVQVLVELANPCGFDLRVDSIYLSVHSGNFDAFPVSVSLLPNSSKV--ITLSGIPTSVGPVTIPGCIVHCFGVITEHLFREVDNLLLGAAQGLVLSDPFRCCGSPKLKNXXXXXXXXXXXXXXXXXXXXGGDAAIVLYEGEIRDVWITLANAGTVPIEQAHIS---LSGKNQ--DSVISYSCETLKSHLPLKPGAEVTFPVTLK 7366
PFIY+P S+GE + KK + W+ G+ +V + + NP F+LRV+++ L F++ P ++S LP S + +TL G+P + G +T+ G FGV ++ L + + + V+ P+L+ +S SL + + ++ LY GE + + + L N G P+E+ ++ L+ K + +S+ E + PL+PG TF +++K
Sbjct: 561 PFIYSPIIAHSRGEERS-KKIDFQWVQGDVCEVQLMVYNPMPFELRVENMGLLTSGVEFESLPAALS-LPAESGLYPVTLVGVPQTTGTITVSGYHTTVFGVFSDCLLDSLPGIKTSGSTVEVIP------ALPRLQ-ISTSLPRSAHSLQPSSGDKISTNVSVQLYNGETQQLVVRLENIGMEPLEKLEVTSKILTTKEKLYGDFLSWKLEDTLAQFPLQPGKVATFTISIK 784
BLAST of rna-TanjilR_16774 vs. DB:Swiss
Match: TPPC9_XENLA (Trafficking protein particle complex subunit 9 OS=Xenopus laevis OX=8355 GN=trappc9 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 3.628e-10 Identity = 65/233 (27.90%), Postives = 104/233 (44.64%), Query Frame = 2
Query: 6698 PFIYTPF---SKGEPNNIKKRELIWIVGEPVQVLVELANPCGFDLRVDSIYLSVHSGNFDAFPVSVSLLPNSSKV--ITLSGIPTSVGPVTIPGCIVHCFGVITEHLFREVDNLLLGAAQGLVLSDPFRCCGSPKLKNXXXXXXXXXXXXXXXXXXXXGGDAAIVLYEGEIRDVWITLANAGTVPIEQAHISLSGKNQDS-----VISYSCETLKSHLPLKPGAEVTFPVTLK 7366
PFIY+P ++ E N KK + W+ G+ +V + + NP F+LRV+++ L F+ P ++S LP S + +TL G+P + G +T+ G GV ++ L + L V+ P+L+ +S L V ++ LY GE + V I L N G P+E+ ++ N +S+ E S PLKPG T V +K
Sbjct: 570 PFIYSPIIAHNRSEEKN-KKIDFQWVQGDVCEVQLMVYNPMPFELRVETMGLLTSGVEFEYLPAALS-LPAESGLYPVTLVGVPRTTGQITVNGYHTSVCGVYSDCLLDNLPGLKNNGCTVEVIP------ALPRLQ-ISTSLPRSAHVLQPSSGDEVSTHVSVQLYNGETQKVIIKLENIGAEPLEKLEVTSKTVNTKEKFYGDFLSWDLEPTLSQFPLKPGNTATLTVYIK 793 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_16774 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 6
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_16774_La_Tanjil_v1.0 ID=rna-TanjilR_16774_La_Tanjil_v1.0; Name=rna-TanjilR_16774; organism=Lupinus angustifolius; type=mRNA; length=9351bpback to top protein sequence of rna-TanjilR_16774_La_Tanjil_v1.0 >rna-TanjilR_16774_La_Tanjil_v1.0 ID=rna-TanjilR_16774_La_Tanjil_v1.0; Name=rna-TanjilR_16774_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=1201bpback to top mRNA from alignment at Chr_LG14-CM007374.1:2416238..2425588- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_16774_La_Tanjil_v1.0 ID=rna-TanjilR_16774_La_Tanjil_v1.0; Name=rna-TanjilR_16774; organism=Lupinus angustifolius; type=mRNA; length=9351bp; location=Sequence derived from: Chr_LG14-CM007374.1:2416238..2425588- (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG14-CM007374.1:2416238..2425588- >rna-TanjilR_16774_La_Tanjil_v1.0 ID=rna-TanjilR_16774_La_Tanjil_v1.0; Name=rna-TanjilR_16774; organism=Lupinus angustifolius; type=CDS; length=3606bp; location=Sequence derived from: Chr_LG14-CM007374.1:2416238..2425588- (Lupinus angustifoliusback to top Annotated Terms
The
following terms have been associated with
this mRNA:
|