rna-TanjilR_16777
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_16777 vs. DB:Swiss
Match: PAGR_ARATH (Protein PECTIC ARABINOGALACTAN SYNTHESIS-RELATED OS=Arabidopsis thaliana OX=3702 GN=PAGR PE=2 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 1.262e-93 Identity = 80/121 (66.12%), Postives = 85/121 (70.25%), Query Frame = 1
Query: 2866 FSYDNVPPEINKLRCRVNYHALKFLPDIEQMADSLASRMRNRTGSSNPYMYVTFFIKTLLSMNFGVFFRFQ*FNTLIINRALHLRFEKGMVGLSFCDFVGTREEKAKMAEYRKKEWPRRYK 3228
YDNVP EIN+LRCRVNYHALKFLP+IEQMADSL SRMRNRTG+ NPYM ALHLRFEKGMVGLSFCDFVGTREEK KMAEYR+KEWPRR+K
Sbjct: 284 LGYDNVPQEINRLRCRVNYHALKFLPEIEQMADSLVSRMRNRTGNPNPYM------------------------------ALHLRFEKGMVGLSFCDFVGTREEKVKMAEYRQKEWPRRFK 374 HSP 2 Score: 141.354 bits (355), Expect = 1.262e-93 Identity = 65/68 (95.59%), Postives = 67/68 (98.53%), Query Frame = 2
Query: 3317 KMQNGSHLWQLALQKRKEGRCPLEPGEVAVILRAMGYPKETQIYVASGQVYGGQNRMAPLRNMFPNLV 3520
+ +NGSHLWQLALQKRKEGRCPLEPGEVAVILRAMGYPKETQIYVASGQVYGGQNRMAPLRNMFPNLV
Sbjct: 372 RFKNGSHLWQLALQKRKEGRCPLEPGEVAVILRAMGYPKETQIYVASGQVYGGQNRMAPLRNMFPNLV 439 HSP 3 Score: 86.6557 bits (213), Expect = 1.262e-93 Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 3
Query: 2640 FTNQENCILSLRRTVKNIPKYAPAQFYIDNVLPRVKEKKIMALKPFVDRLG 2792
FT++ S+RRTVKNIPKYA AQFYIDNVLPR+KEKKIMALKPFVDRLG
Sbjct: 235 FTDKAELFSSIRRTVKNIPKYAAAQFYIDNVLPRIKEKKIMALKPFVDRLG 285 HSP 4 Score: 240.35 bits (612), Expect = 8.208e-67 Identity = 114/119 (95.80%), Postives = 115/119 (96.64%), Query Frame = 1
Query: 3850 VTKEELATKEELDGFRKHVTSLAALDFLVCLKSDVFVMTHGGNFAKLIIGARRYMGHRLKSIKPDKGLMSKSFGDPYMGWATFVEDVVVTHQTRTGLPEETFPNYDLWENPLTPCMCKA 4206
VTKE+LA KEEL FRKHVTSLAALDFLVCLKSDVFVMTHGGNFAKLIIGARRYMGHR KSIKPDKGLMSKSFGDPYMGWATFVEDVVVTHQTRTGLPEETFPNYDLWENPLTPCMCKA
Sbjct: 439 VTKEDLAGKEELTTFRKHVTSLAALDFLVCLKSDVFVMTHGGNFAKLIIGARRYMGHRQKSIKPDKGLMSKSFGDPYMGWATFVEDVVVTHQTRTGLPEETFPNYDLWENPLTPCMCKA 557 HSP 5 Score: 86.2705 bits (212), Expect = 8.125e-16 Identity = 39/49 (79.59%), Postives = 43/49 (87.76%), Query Frame = 3
Query: 2097 HDDTFRDCRKFEDIFDVDHFIDYLKYDVRIVRDIPEWFTDKSELFSSIR 2243
D ++D KFEDIFDVDHFIDYLK DVRIVRDIP+WFTDK+ELFSSIR
Sbjct: 198 QDQIWKDTTKFEDIFDVDHFIDYLKDDVRIVRDIPDWFTDKAELFSSIR 246 HSP 6 Score: 80.1073 bits (196), Expect = 6.624e-14 Identity = 43/79 (54.43%), Postives = 45/79 (56.96%), Query Frame = 2
Query: 458 NAPYLCKKDGIVLHCPHVSVILEIVLVIHFLLLHCSIVFFLGCNY*VKESPSLWENPLSSTTSWKPCAERRDGVISGFP 694
NAPYLCKKDGIVL+CPHV KESPS WENPLS+TTSWKPCAERR G IS P
Sbjct: 104 NAPYLCKKDGIVLNCPHV-----------------------------KESPSPWENPLSATTSWKPCAERRIGGISDLP 153 HSP 7 Score: 61.2326 bits (147), Expect = 5.073e-8 Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 2
Query: 1862 KMQICNAVAVAKILNATLILPVLKQDQIWKDQT 1960
++ ICNAVAVAKI+NATLILPVLKQDQIWKD T
Sbjct: 174 RIAICNAVAVAKIMNATLILPVLKQDQIWKDTT 206
BLAST of rna-TanjilR_16777 vs. DB:Swiss
Match: RHS17_ARATH (Protein ROOT HAIR SPECIFIC 17 OS=Arabidopsis thaliana OX=3702 GN=RHS17 PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 5.617e-23 Identity = 30/52 (57.69%), Postives = 42/52 (80.77%), Query Frame = 2
Query: 3362 RKEGRCPLEPGEVAVILRAMGYPKETQIYVASGQVYGGQNRMAPLRNMFPNL 3517
R+ GRCPL P E+ ++LR +G+ KE +YVASG+VYGG++ +APLR +FPNL
Sbjct: 337 RRHGRCPLTPEEIGLMLRGLGFGKEVHLYVASGEVYGGEDTLAPLRALFPNL 388 HSP 2 Score: 53.9138 bits (128), Expect = 5.617e-23 Identity = 35/117 (29.91%), Postives = 52/117 (44.44%), Query Frame = 1
Query: 2890 EINKLRCRVNYHALKFLPDIEQMADSLASRMRNRTGSSNPYMYVTFFIKTLLSMNFGVFFRFQ*FNTLIINRALHLRFEKGMVGLSFCDFVGTREEKAKMAEYRKKEWPRRYKVLYS 3240
E+ KLRCRVNYHA+++ I +M L RMR + F+ ALHLRFE M+ S C + G ++E+ ++ R RR+K L++
Sbjct: 252 ELQKLRCRVNYHAVRYTESINRMGQLLVDRMRKK---------AKHFV------------------------ALHLRFEPDMLAFSGCYYGGGQKERLELGAMR-----RRWKTLHA 330 HSP 3 Score: 21.9422 bits (45), Expect = 5.617e-23 Identity = 14/52 (26.92%), Postives = 23/52 (44.23%), Query Frame = 3
Query: 2649 QENCILSLRRTVKNIPKYAPAQFYIDNVLPRVKEKKIMALKPFVDRLG*AKD 2804
+E +S +P+ Y+ VLP + +K ++ L F RL A D
Sbjct: 199 EEQSRISTSLQSMRVPRKCTPSCYLQRVLPILTKKHVVQLSKFDYRLSNALD 250 HSP 4 Score: 80.8777 bits (198), Expect = 4.046e-14 Identity = 45/119 (37.82%), Postives = 69/119 (57.98%), Query Frame = 1
Query: 3853 TKEELATKEELDGFRKHVTSLAALDFLVCLKSDVFVMTHGGNFAKLIIGARRYMGHRLKSIKPDKGLMSKSFGDPY-MGWATFVEDVVVTHQTRTGLPEETFPNY-DLWENPLTPCMCK 4203
TKE L +K+EL F + +AALDF+VC KSD FV + GN A+++ G RRY+GH++ +I+P+ + + F + + M W F V G P+E P + ENP + C+C+
Sbjct: 390 TKETLTSKKELAPFANFSSRMAALDFIVCDKSDAFVTNNNGNMARILAGRRRYLGHKV-TIRPNAKKLYEIFKNRHNMTWGEFSSKVRRYQTGFMGEPDEMKPGEGEFHENPAS-CICR 506
BLAST of rna-TanjilR_16777 vs. DB:Swiss
Match: OFUT6_ARATH (O-fucosyltransferase 6 OS=Arabidopsis thaliana OX=3702 GN=OFUT6 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.866e-22 Identity = 29/54 (53.70%), Postives = 43/54 (79.63%), Query Frame = 2
Query: 3356 QKRKEGRCPLEPGEVAVILRAMGYPKETQIYVASGQVYGGQNRMAPLRNMFPNL 3517
++R++GRCPL P EV ++LRA+GY + IYVASG+VYGG+ +APL+ +FP+
Sbjct: 319 KQRRQGRCPLTPEEVGLMLRALGYGSDVHIYVASGEVYGGEKSLAPLKALFPHF 372 HSP 2 Score: 56.9954 bits (136), Expect = 1.866e-22 Identity = 40/116 (34.48%), Postives = 52/116 (44.83%), Query Frame = 1
Query: 2890 EINKLRCRVNYHALKFLPDIEQMADSLASRMRNRTGSSNPYMYVTFFIKTLLSMNFGVFFRFQ*FNTLIINRALHLRFEKGMVGLSFCDFVGTREEKAKMAEYRKKEWPRRYKVLY 3237
++ KLRCRVNYHALKF I +M + L RMR R+ FI ALHLRFE M+ S C + G +EK ++ R RR+K L+
Sbjct: 236 DLQKLRCRVNYHALKFTDPILEMGNELVRRMRKRS---------KHFI------------------------ALHLRFEPDMLAFSGCYYGGGEKEKKELGTIR-----RRWKTLH 313 HSP 3 Score: 20.4014 bits (41), Expect = 1.866e-22 Identity = 10/33 (30.30%), Postives = 19/33 (57.58%), Query Frame = 3
Query: 2691 IPKYAPAQFYIDNVLPRVKEKKIMALKPFVDRL 2789
+P+ + YI+ VLP ++++ + L F RL
Sbjct: 197 VPRKCNEKCYINRVLPVLQKRHAVQLNKFDYRL 229 HSP 4 Score: 75.8702 bits (185), Expect = 1.441e-12 Identity = 46/125 (36.80%), Postives = 68/125 (54.40%), Query Frame = 1
Query: 3835 HFW*QVTKEELATKEELDGFRKHVTSLAALDFLVCLKSDVFVMTHGGNFAKLIIGARRYMGHRLKSIKPDKGLMSKSF-GDPYMGWATFVEDVVVTHQTRTGLPEETFPNY-DLWENPLTPCMCK 4203
HF+ +K+ +ATK EL F + + +AALDFLVC +SDVFV + GN A+++ G RRY GH+ +I+P+ + K F W F V + G P+E + ENP C+C+
Sbjct: 371 HFY---SKDTIATKMELKPFSSYSSRMAALDFLVCDESDVFVTNNNGNMARILAGRRRYFGHK-PTIRPNAKKLYKLFMSKENTTWEEFASRVRTFQKGFMGEPKEVRAGKGEFHENP-AACICE 490
BLAST of rna-TanjilR_16777 vs. DB:Swiss
Match: OFT16_ARATH (O-fucosyltransferase 16 OS=Arabidopsis thaliana OX=3702 GN=OFUT16 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 2.006e-21 Identity = 29/54 (53.70%), Postives = 43/54 (79.63%), Query Frame = 2
Query: 3356 QKRKEGRCPLEPGEVAVILRAMGYPKETQIYVASGQVYGGQNRMAPLRNMFPNL 3517
++R++GRCPL P EV ++LRA+GY + IYVASG+VYGG+ +APL+ +FP+
Sbjct: 316 KQRRQGRCPLTPEEVGLMLRALGYGSDVHIYVASGEVYGGEESLAPLKALFPHF 369 HSP 2 Score: 53.5286 bits (127), Expect = 2.006e-21 Identity = 39/116 (33.62%), Postives = 52/116 (44.83%), Query Frame = 1
Query: 2890 EINKLRCRVNYHALKFLPDIEQMADSLASRMRNRTGSSNPYMYVTFFIKTLLSMNFGVFFRFQ*FNTLIINRALHLRFEKGMVGLSFCDFVGTREEKAKMAEYRKKEWPRRYKVLY 3237
++ KLRCRVNYHALKF I M + L RMR R+ FI ALHLR+E M+ S C + G +E+ ++A R RR+K L+
Sbjct: 233 DLQKLRCRVNYHALKFTDPILTMGNELVRRMRLRS---------KHFI------------------------ALHLRYEPDMLAFSGCYYGGGDKERRELAAIR-----RRWKTLH 310 HSP 3 Score: 80.4925 bits (197), Expect = 5.096e-14 Identity = 47/125 (37.60%), Postives = 72/125 (57.60%), Query Frame = 1
Query: 3835 HFW*QVTKEELATKEELDGFRKHVTSLAALDFLVCLKSDVFVMTHGGNFAKLIIGARRYMGHRLKSIKPDKGLMSKSF-GDPYMGWATFVEDVVVTHQTRTGLPEETFPNY-DLWENPLTPCMCK 4203
HF+ +K+ +ATKEEL+ F + + +AALDFLVC +SDVFV + GN AK++ G RRY+GH+ +++P+ + + F W F V + G P+E + ENP T C+C+
Sbjct: 368 HFY---SKDTIATKEELEPFSSYSSRMAALDFLVCDESDVFVTNNNGNMAKILAGRRRYLGHK-PTVRPNAKKLYRLFMNKENTTWEEFSSKVRSFQRGFMGEPKEVRAGRGEFHENPST-CICE 487
BLAST of rna-TanjilR_16777 vs. DB:Swiss
Match: OFT31_ARATH (O-fucosyltransferase 31 OS=Arabidopsis thaliana OX=3702 GN=OFUT31 PE=2 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 1.144e-19 Identity = 46/121 (38.02%), Postives = 65/121 (53.72%), Query Frame = 1
Query: 2866 FSYDNVPPEINKLRCRVNYHALKFLPDIEQMADSLASRMRNRTGSS--NPYMYVTFFIKTLLSMNFGVFFRFQ*FNTLIINRALHLRFEKGMVGLSFCDFVGTREEKAKMAEYRKKEWPRR 3222
++DN+P I +LRC+VN+ AL F+P I ++ D+L R+RN SS + M T I T++ G F LHLRF+K M S CDF G + EK +A+YR+ W R
Sbjct: 230 LAFDNLPESIQRLRCKVNFEALNFVPHIRELGDALVHRLRNPPSSSQTSGTMDPTDRINTIVKAGAGKF------------AVLHLRFDKDMAAHSGCDFEGGKAEKLALAKYRQVIWQGR 338 HSP 2 Score: 36.5798 bits (83), Expect = 1.144e-19 Identity = 15/36 (41.67%), Postives = 24/36 (66.67%), Query Frame = 3
Query: 2682 VKNIPKYAPAQFYIDNVLPRVKEKKIMALKPFVDRL 2789
+K P +A A++Y++NVLP ++ I A+ PF RL
Sbjct: 195 IKTAPVHASAEWYLENVLPIIQSYGIAAVAPFSHRL 230 HSP 3 Score: 64.6994 bits (156), Expect = 4.623e-9 Identity = 25/52 (48.08%), Postives = 39/52 (75.00%), Query Frame = 2
Query: 3362 RKEGRCPLEPGEVAVILRAMGYPKETQIYVASGQVYGGQNRMAPLRNMFPNL 3517
R +GRCPL P E+ ++L A+G+ T++Y+AS QVYGG+ R++ LR +FP +
Sbjct: 350 RNKGRCPLTPEEIGLLLSALGFSNNTRLYLASHQVYGGEARISTLRKLFPGI 401 HSP 4 Score: 63.929 bits (154), Expect = 7.695e-9 Identity = 35/116 (30.17%), Postives = 59/116 (50.86%), Query Frame = 1
Query: 3856 KEELATKEELDGFRKHVTSLAALDFLVCLKSDVFVMTHGGNFAKLIIGARRYMGHRLKSIKPDKGLMSKSFGDPYMGWATFVEDVVVTHQTRTGLPEETFPNYDLWENPLTPCMCK 4203
K+ LA+ EEL + + +AA+D+ V +KSD+F+ GN + R Y+ LK+I+P+ L+ + F + + W+ F V+ H+ R G ++ P CMCK
Sbjct: 404 KKSLASAEELADVQGKASLMAAVDYYVSMKSDIFISASPGNMHNALQAHRAYL--NLKTIRPNMILLGQVFVNKSLDWSEFEGAVMNGHKNRQGQLRLRKQKQSIYTYPAPDCMCK 517
BLAST of rna-TanjilR_16777 vs. DB:Swiss
Match: OFT39_ARATH (O-fucosyltransferase 39 OS=Arabidopsis thaliana OX=3702 GN=OFUT39 PE=2 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 7.898e-18 Identity = 44/119 (36.97%), Postives = 66/119 (55.46%), Query Frame = 1
Query: 2866 FSYDNVPPEINKLRCRVNYHALKFLPDIEQMADSLASRMRNRTGSSNPYMYVTFFIKTLLSMNFGVFFRFQ*FNTLIINRALHLRFEKGMVGLSFCDFVGTREEKAKMAEYRKKEWPRR 3222
S+D++P EI +LRC+VN+ AL+F+P I + D+L SR+RN + SN + + + + R Q + LHLRF+K M S CDF G + EK +A+YR+ W R
Sbjct: 214 LSFDHLPAEIQRLRCKVNFQALRFVPHITSLGDALVSRLRNPSWRSNKEQKNVDHLGDMTNPH-----RRQEPGKFAV---LHLRFDKDMAAHSACDFGGGKAEKLSLAKYRQMIWQGR 324 HSP 2 Score: 35.4242 bits (80), Expect = 7.898e-18 Identity = 19/51 (37.25%), Postives = 30/51 (58.82%), Query Frame = 3
Query: 2640 FTNQENCILSLRRT-VKNIPKYAPAQFYIDNVLPRVKEKKIMALKPFVDRL 2789
++ +E ++R T VK P +A A +YI+NV P ++ I A+ PF RL
Sbjct: 164 WSTREYYGTAVRETRVKTAPVHASANWYIENVSPVLQSYGIAAISPFSHRL 214 HSP 3 Score: 64.3142 bits (155), Expect = 5.712e-9 Identity = 34/115 (29.57%), Postives = 55/115 (47.83%), Query Frame = 1
Query: 3856 KEELATKEELDGFRKHVTSLAALDFLVCLKSDVFVMTHGGNFAKLIIGARRYMGHRLKSIKPDKGLMSKSFGDPYMGWATFVEDVVVTHQTRTGLPEETFPNYDLWENPLTPCMC 4200
K LA+ EE + + LAALD+ V + SD+F+ GN ++G R + LK+I+P+ L+ + F + + W F + + H R G P ++ P CMC
Sbjct: 390 KRSLASSEERARIKGKASLLAALDYYVSMHSDIFISASPGNMHNALVGHRTF--ENLKTIRPNMALIGQLFLNKSITWVDFQQALGEGHVNRQGQIRLRKPKQSIYTYPAPDCMC 502 HSP 4 Score: 60.8474 bits (146), Expect = 5.615e-8 Identity = 24/52 (46.15%), Postives = 38/52 (73.08%), Query Frame = 2
Query: 3362 RKEGRCPLEPGEVAVILRAMGYPKETQIYVASGQVYGGQNRMAPLRNMFPNL 3517
R +GRCPL P E+ ++L A G+ T++Y+AS +VYGG+ R++ LR +FP +
Sbjct: 336 RSQGRCPLTPEEMGLLLAAFGFDNNTRLYLASHKVYGGEARISTLRQVFPRM 387
BLAST of rna-TanjilR_16777 vs. DB:Swiss
Match: OFUT9_ARATH (O-fucosyltransferase 9 OS=Arabidopsis thaliana OX=3702 GN=OFUT9 PE=2 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 1.891e-16 Identity = 52/121 (42.98%), Postives = 71/121 (58.68%), Query Frame = 1
Query: 3853 TKEELATKEELDGFRKHVTSLAALDFLVCLKSDVFVMTHGGNFAKLIIGARRYM--GHRLKSIKPDKGLMSKSFGDPYMGWATFVEDV--VVTHQTRTGLPEETFPNYDLWENPLTPCMCK 4203
TK+ LAT EEL F+ H + LAALD+ VCL S+VFV T GGNF +IG RRY+ GH ++IKPDK + + P + W F + + ++ H G+ E P L+ P+ CMCK
Sbjct: 439 TKDTLATPEELAPFKGHSSRLAALDYTVCLHSEVFVSTQGGNFPHFLIGHRRYLYKGH-AETIKPDKRKLVQLLDKPSIRWDYFKKQMQDMLRHNDAKGV-ELRKPAASLYTFPMPDCMCK 557 HSP 2 Score: 62.3882 bits (150), Expect = 2.616e-8 Identity = 27/52 (51.92%), Postives = 35/52 (67.31%), Query Frame = 2
Query: 3362 RKEGRCPLEPGEVAVILRAMGYPKETQIYVASGQVYGGQNRMAPLRNMFPNL 3517
R +G+CPL P EV ++LR MG+ T +YVA+G +Y MAPLR MFP L
Sbjct: 386 RIDGKCPLTPLEVGMMLRGMGFNNSTLVYVAAGNIYKADKYMAPLRQMFPLL 437
BLAST of rna-TanjilR_16777 vs. DB:Swiss
Match: ESMD1_ARATH (Protein ESMERALDA 1 OS=Arabidopsis thaliana OX=3702 GN=ESMD1 PE=2 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 2.578e-16 Identity = 47/120 (39.17%), Postives = 71/120 (59.17%), Query Frame = 1
Query: 3853 TKEELATKEELDGFRKHVTSLAALDFLVCLKSDVFVMTHGGNFAKLIIGARRYM-GHRLKSIKPDKGLMSKSFGDPYMGWATFVEDVV--VTHQTRTGLPEETFPNYDLWENPLTPCMCK 4203
TKE LA++EEL ++ + +AA+D+ VCL S+VFV T GGNF ++G RRYM G K+I+PDK ++ F +P +GW +F ++ +H G E PN ++ P CM +
Sbjct: 434 TKEMLASEEELAPYKNFSSRMAAIDYTVCLHSEVFVTTQGGNFPHFLMGHRRYMFGGHSKTIRPDKRKLAILFDNPNIGWRSFKRQMLNMRSHSDSKGF-ELKRPNDSIYTFPCPDCMSR 552 HSP 2 Score: 51.6026 bits (122), Expect = 6.074e-10 Identity = 35/116 (30.17%), Postives = 50/116 (43.10%), Query Frame = 1
Query: 2866 FSYDNVPPEINKLRCRVNYHALKFLPDIEQMADSLASRMRNRTGSSNPYMYVTFFIKTLLSMNFGVFFRFQ*FNTLIINRALHLRFEKGMVGLSFCDFVGTREEKAKMAEYRKKEW 3213
S+D P + +LRC NY ALKF I + ++L RM+ + S N G + ++HLRFE+ MV S C F G +EK M R++ W
Sbjct: 279 LSFD-APQAVQRLRCLANYEALKFSKTILTLGETLVKRMKEQ------------------SANHGAKY-----------VSVHLRFEEDMVAFSCCIFDGGNQEKQDMIAARERGW 364 HSP 3 Score: 36.1946 bits (82), Expect = 6.074e-10 Identity = 13/33 (39.39%), Postives = 25/33 (75.76%), Query Frame = 3
Query: 2691 IPKYAPAQFYIDNVLPRVKEKKIMALKPFVDRL 2789
+ ++P Q+Y D++LP++ E+KI+ + PF +RL
Sbjct: 247 VKAWSPIQYYRDSILPKLLEEKIIRISPFANRL 279 HSP 4 Score: 65.4698 bits (158), Expect = 2.381e-9 Identity = 28/52 (53.85%), Postives = 37/52 (71.15%), Query Frame = 2
Query: 3362 RKEGRCPLEPGEVAVILRAMGYPKETQIYVASGQVYGGQNRMAPLRNMFPNL 3517
R+ G+CPL P EV ++LR MG+ K T I++ASG++Y MAPL MFPNL
Sbjct: 381 RQNGKCPLTPLEVGLMLRGMGFNKSTYIFLASGEIYDANRTMAPLLEMFPNL 432
BLAST of rna-TanjilR_16777 vs. DB:Swiss
Match: RRT3_ARATH (Rhamnogalacturonan I rhamnosyltransferase 4 OS=Arabidopsis thaliana OX=3702 GN=RRT3 PE=1 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.815e-16 Identity = 30/75 (40.00%), Postives = 51/75 (68.00%), Query Frame = 2
Query: 3311 LLKMQNGSHLWQ----LALQKRKEGRCPLEPGEVAVILRAMGYPKETQIYVASGQVYGGQNRMAPLRNMFPNLVK 3523
L KM+ W+ ++ ++R +G CPL P E ++L+A+G+ K+TQIY+A+G+++GG R+A L+ FP +VK
Sbjct: 283 LKKMRYAYPWWREKEIVSEERRVQGLCPLTPEEAVLVLKALGFQKDTQIYIAAGEIFGGAKRLALLKESFPRIVK 357 HSP 2 Score: 40.4318 bits (93), Expect = 2.815e-16 Identity = 28/104 (26.92%), Postives = 41/104 (39.42%), Query Frame = 1
Query: 2890 EINKLRCRVNYHALKFLPDIEQMADSLASRMRNRTGSSNPYMYVTFFIKTLLSMNFGVFFRFQ*FNTLIINRALHLRFEKGMVGLSFCDFVGTREEKAKMAEYR 3201
++ +LRCRVN+ L+F P IE + L ++ R G F ALHLR+E M+ S C T EE ++ + R
Sbjct: 218 DLQRLRCRVNFQGLRFTPRIEALGSKLVRILQQR----------------------GSFV------------ALHLRYEMDMLAFSGCTHGCTDEEAEELKKMR 287 HSP 3 Score: 60.077 bits (144), Expect = 1.043e-7 Identity = 35/97 (36.08%), Postives = 53/97 (54.64%), Query Frame = 1
Query: 3850 VTKEELATKEELDGFRKHVTSLAALDFLVCLKSDVFVMTHGGNFAKLIIGARRYMGHRLKSIKPDKGLMSKSF---GDPYMGWATFVEDVVVTHQTR 4131
V KE L EL F+ H + +AALDF+V + S+ F+ T+ GN AK++ G RRY+G + K+I D+ + + + + W F V HQ R
Sbjct: 356 VKKEMLLDPTELQQFQNHSSQMAALDFIVSVASNTFIPTYYGNMAKVVEGHRRYLGFK-KTILLDRKRLVELLDLHNNKTLSWDQFAVAVKDAHQGR 451
BLAST of rna-TanjilR_16777 vs. DB:Swiss
Match: OFUT4_ARATH (O-fucosyltransferase 4 OS=Arabidopsis thaliana OX=3702 GN=OFUT4 PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 3.881e-15 Identity = 45/120 (37.50%), Postives = 71/120 (59.17%), Query Frame = 1
Query: 3853 TKEELATKEELDGFRKHVTSLAALDFLVCLKSDVFVMTHGGNFAKLIIGARRYM-GHRLKSIKPDKGLMSKSFGDPYMGWATFVEDVVV--THQTRTGLPEETFPNYDLWENPLTPCMCK 4203
TKE LA++E+L F+ + +AA+D+ VCL S+VFV T GGNF ++G RRY+ G K+I+PDK ++ F +P +GW +F ++ +H G E + ++ P CMC+
Sbjct: 435 TKEMLASEEDLAPFKNFSSRMAAIDYTVCLHSEVFVTTQGGNFPHFLMGHRRYLFGGHSKTIQPDKRKLAVLFDNPKLGWKSFKRQMLSMRSHSDSKGF-ELKRSSDSIYIFPCPDCMCR 553 HSP 2 Score: 62.3882 bits (150), Expect = 2.401e-8 Identity = 27/53 (50.94%), Postives = 35/53 (66.04%), Query Frame = 2
Query: 3359 KRKEGRCPLEPGEVAVILRAMGYPKETQIYVASGQVYGGQNRMAPLRNMFPNL 3517
R G+CPL P EV ++LR MG+ K T I++A+G +Y MAPL MFPNL
Sbjct: 381 NRLNGKCPLTPLEVGLMLRGMGFNKSTYIFLAAGPIYSANRTMAPLLEMFPNL 433 HSP 3 Score: 42.743 bits (99), Expect = 2.108e-7 Identity = 32/116 (27.59%), Postives = 48/116 (41.38%), Query Frame = 1
Query: 2866 FSYDNVPPEINKLRCRVNYHALKFLPDIEQMADSLASRMRNRTGSSNPYMYVTFFIKTLLSMNFGVFFRFQ*FNTLIINRALHLRFEKGMVGLSFCDFVGTREEKAKMAEYRKKEW 3213
S+D P + + RC N AL+F I ++L ++M K L + N G + ++HLRFE+ MV S C F G +EK M R++ W
Sbjct: 280 LSFD-APRAVQRFRCLANNVALRFSKPILTQGETLVNKM-----------------KGLSANNAGKYV------------SVHLRFEEDMVAFSCCVFDGGDQEKQDMIAARERGW 365 HSP 4 Score: 36.5798 bits (83), Expect = 2.108e-7 Identity = 13/33 (39.39%), Postives = 24/33 (72.73%), Query Frame = 3
Query: 2691 IPKYAPAQFYIDNVLPRVKEKKIMALKPFVDRL 2789
+ +AP +Y D+VLP++ E+K++ + PF +RL
Sbjct: 248 VKAWAPTSYYRDSVLPKLLEEKVIRISPFANRL 280 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_16777 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_16777_La_Tanjil_v1.0 ID=rna-TanjilR_16777_La_Tanjil_v1.0; Name=rna-TanjilR_16777; organism=Lupinus angustifolius; type=mRNA; length=4209bpback to top protein sequence of rna-TanjilR_16777_La_Tanjil_v1.0 >rna-TanjilR_16777_La_Tanjil_v1.0 ID=rna-TanjilR_16777_La_Tanjil_v1.0; Name=rna-TanjilR_16777_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=537bpback to top mRNA from alignment at Chr_LG14-CM007374.1:2444734..2448942- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_16777_La_Tanjil_v1.0 ID=rna-TanjilR_16777_La_Tanjil_v1.0; Name=rna-TanjilR_16777; organism=Lupinus angustifolius; type=mRNA; length=4209bp; location=Sequence derived from: Chr_LG14-CM007374.1:2444734..2448942- (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG14-CM007374.1:2444734..2448942- >rna-TanjilR_16777_La_Tanjil_v1.0 ID=rna-TanjilR_16777_La_Tanjil_v1.0; Name=rna-TanjilR_16777; organism=Lupinus angustifolius; type=CDS; length=1614bp; location=Sequence derived from: Chr_LG14-CM007374.1:2444734..2448942- (Lupinus angustifoliusback to top |