rna-TanjilR_12562
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_12562 vs. DB:Swiss
Match: UNC13_ARATH (Protein unc-13 homolog OS=Arabidopsis thaliana OX=3702 GN=PATROL1 PE=2 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 5.971e-42 Identity = 99/331 (29.91%), Postives = 165/331 (49.85%), Query Frame = 1
Query: 3397 VITVFICLNSGSRNTFLPTMPALTRCTIGSKFQGFGKKK--DKSPNSQKRNPQVATNGDSSFGIPQLCVRINTLQWVLGEFDVLEK-----------RIITLLRNSESARVEDFSNGLAKKFELYPAACLEGIQQLCEAAAYRLVFHNLSHALWDGLYVGDPSSSRIDPFLQELERNLMFISDTINEKIRTRILTEIMRASFDGFLLVLLAGGPSRSFSQKDCQIIEDDFEVLKEMFWANGDGLPSELIDKFSTTVRSVLPLFRTETDSLIERFRRVTSERYKSNGRTKLPLPPTSGQWDPSEPNTLLRVLCYRNDESATRFLKKTYDLPK 4350
V T + S++ +P +P LTR + + F KK+ D ++R+ + + LCV++NTL + + + LE R ++R S + + F+ + FE + ++CE +++F +L + LY + S SR++ ++ L+ L + I E +R RI+T +++AS DG L VLL GG SR F + +++E+D EVLKE F + GDGLP +++ VR V+ L ET LI+ R +S + G+ KL ++ TL+RVLC+RND A++FLKK Y +P+
Sbjct: 785 VYTNHVMEKLASKDDLVPPVPVLTRYKKETAIKVFVKKELFDSKHLDERRSINIDVPATA-----MLCVQLNTLHYAVSQLSKLEDSMWLRWIAKKPREKIVIRKSMVEKSKSFNQ--KESFEGSRKDINAALDRICEFTGTKIIFCDLREPFIENLYKPNVSQSRLEGLIEALDTELGQLCSVIMEPLRDRIVTSLLQASLDGLLRVLLDGGASRVFHPSESKLLEEDVEVLKEFFISGGDGLPRGVVENQVARVRLVVKLHGYETRELIDDLRSRSSLEMQQGGKGKL----------GADTQTLVRVLCHRNDSEASQFLKKQYKIPR 1098 HSP 2 Score: 46.9802 bits (110), Expect = 5.971e-42 Identity = 21/54 (38.89%), Postives = 27/54 (50.00%), Query Frame = 3
Query: 3162 WSPQTNQEGCAPSAVEALRTVNETLDAFFQLPIPMHPALLPEVMNGLDRCIQYY 3323
W P + Q+ S VE R V ET+D FF L +PM L + G+D Q Y
Sbjct: 733 WDPISPQQRYGSSIVEVFRIVEETVDQFFALKVPMRSIELSALFRGIDNAFQVY 786 HSP 3 Score: 144.821 bits (364), Expect = 1.924e-33 Identity = 106/310 (34.19%), Postives = 169/310 (54.52%), Query Frame = 1
Query: 1150 QVGRRIESVVVPLELLQQLKVSDFADRQEYEEWQKRTLKVLEAGLILHPHLPLDKSNSAAQRLRQI---IHGALDRPIETG--RNNESMQVLRSAVMSLANRSYDGSLS-DSCHWADGIPLNLRLYEMLLQSCFDANDESSIIEEFDELMEQIKKTWGILGLNQTLHNLCFTWVLFHRFVATGQMDLELLSAADGQLAEVA-------------KDAKTTKDSEYSQILSSTLTSIMGWAEKRLLAYHETFDRVNVETMEGIVSLGVAAAKILVEDISNEYXXXXXXXXXXXXXXIETYIRSSLRTAFAQ 2022
+VG+R++S++VPLELL + ++F+D++ Y WQKR L +L GLI +P + +S A L+ + I + P G + E ++ LR +SLA R G L+ + CHWADG LN+RLYE LL FD ++ + EE +E++E +K TW +LG+ +T+H C+ WVLF ++V T + LL A QL ++ K K D+E L S L+ I WA+K+L YH F ++ ME V++ + ++L+E+ R + RE+IE+Y+ SS++ F +
Sbjct: 286 KVGKRMDSLLVPLELLCCVSRTEFSDKKAYLRWQKRQLNMLAEGLINNPVVGFGESGRKATDLKSLLLRIEESESLPSSAGEVQRAECLKSLREVAISLAERPARGDLTGEVCHWADGYHLNVRLYEKLLLCVFDILNDGKLTEEVEEILELLKSTWRVLGITETIHYTCYAWVLFRQYVITSERG--LLRHAIQQLKKIPLKEQRGPQERLHLKTLKCRVDNEEISFLESFLSPIRSWADKQLGDYHLHFAEGSL-VMEDTVTVAMITWRLLLEE-----SDRAMHSNSSDREQIESYVLSSIKNTFTR 587 HSP 4 Score: 92.0485 bits (227), Expect = 3.099e-17 Identity = 49/131 (37.40%), Postives = 74/131 (56.49%), Query Frame = 2
Query: 2459 LAILAKDVGSLAVNEKQVFSPILKRWHPLAAGLAVATLHVGYGNELKQFISGITELTPDVVQVLRAADQLEKDLVQIAVEDSVESDDGGKAIIREMPPYEAEATIANLVKIWIKSRLDKLKEWVDRNLQQE 2851
LA+LA++ L + +F PIL + HP A + + +H YGN+LK F+ G LT D V V AAD LE+ L+++ SV +D +++ PYE E+ LV WI S+L ++ WV+R +QE
Sbjct: 603 LALLAEETKKLMKKDSTIFMPILSQRHPQAIAFSASLIHKLYGNKLKPFLDGAEHLTEDAVSVFPAADSLEQYLLELMT--SVCGEDTSGPYFKKLIPYEVESLSGTLVLRWINSQLGRILSWVERAYKQE 731 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_12562 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 1
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_12562_La_Tanjil_v1.0 ID=rna-TanjilR_12562_La_Tanjil_v1.0; Name=rna-TanjilR_12562; organism=Lupinus angustifolius; type=mRNA; length=4359bpback to top protein sequence of rna-TanjilR_12562_La_Tanjil_v1.0 >rna-TanjilR_12562_La_Tanjil_v1.0 ID=rna-TanjilR_12562_La_Tanjil_v1.0; Name=rna-TanjilR_12562_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=985bpback to top mRNA from alignment at Chr_LG14-CM007374.1:14376272..14380630- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_12562_La_Tanjil_v1.0 ID=rna-TanjilR_12562_La_Tanjil_v1.0; Name=rna-TanjilR_12562; organism=Lupinus angustifolius; type=mRNA; length=4359bp; location=Sequence derived from: Chr_LG14-CM007374.1:14376272..14380630- (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG14-CM007374.1:14376272..14380630- >rna-TanjilR_12562_La_Tanjil_v1.0 ID=rna-TanjilR_12562_La_Tanjil_v1.0; Name=rna-TanjilR_12562; organism=Lupinus angustifolius; type=CDS; length=2958bp; location=Sequence derived from: Chr_LG14-CM007374.1:14376272..14380630- (Lupinus angustifoliusback to top |