rna-TanjilR_12555

Transcript Overview


Name	rna-TanjilR_12555
Unique Name	rna-TanjilR_12555_La_Tanjil_v1.0
Type	mRNA
Organism	Lupinus angustifolius (blue lupin)
Sequence length	4552
Product	hypothetical protein

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr_LG14-CM007374.1	supercontig	Chr_LG14-CM007374.1:14447549..14452100 +	Lupinus angustifolius L. Tanjil genome v1.0	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Lupinus angustifolius L. Tanjil genome v1.0	2019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.0	2020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot	2020-01-28

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
ananL077	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ananR262	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ananR276	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ananR281	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ancaiR0369	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
ancaR0330	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ancaR0331	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ancaR0354	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
anccR0408	Cajanus cajan Asha genome v1.0	Cajanus cajan
anccR0424	Cajanus cajan Asha genome v1.0	Cajanus cajan
ancrR0394	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
anpsR0287	Pisum sativum Cameor genome v1a	Pisum sativum
anpsR0303	Pisum sativum Cameor genome v1a	Pisum sativum
anpvR0393	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
anvuR0321	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
anasR0368	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
anzwsR0323	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
anzwsR0346	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
antifR0329	Vicia faba cv. Tiffany genome v1.0	Vicia faba
antifR0342	Vicia faba cv. Tiffany genome v1.0	Vicia faba
anvfhR0329	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
anvfhR0343	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
anvrvR0313	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
anvuaR0291	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
anvuaR0303	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
anvssR0370	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
anvssR0387	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
ancanR0292	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
ancanR0293	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
anavjR0349	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
ancarR0331		Cicer arietinum
ancarR0338		Cicer arietinum
anccaR0286	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
anccaR0304	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
anvumR0366	Vigna umbellata FF25 genome v1.0	Vigna umbellata
anvvaR0351	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
anvasR0368	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
anvstR0372	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
anvunR0305	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
anpvfR0404	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
gene-TanjilG_12555	gene-TanjilG_12555_La_Tanjil_v1.0	Lupinus angustifolius	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_12555	rna-TanjilR_12555_La_Tanjil_v1.0-protein	Lupinus angustifolius	polypeptide
rna-TanjilR_12555_La_Tanjil_v1.0	rna-TanjilR_12555_La_Tanjil_v1.0	Lupinus angustifolius	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_12555_La_Tanjil_v1.0-exon-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:14447549..14447643	rna-TanjilR_12555_La_Tanjil_v1.0-exon-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:14447549..14447643	Lupinus angustifolius	exon
rna-TanjilR_12555_La_Tanjil_v1.0-exon-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:14448176..14448519	rna-TanjilR_12555_La_Tanjil_v1.0-exon-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:14448176..14448519	Lupinus angustifolius	exon
rna-TanjilR_12555_La_Tanjil_v1.0-exon-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:14448853..14450123	rna-TanjilR_12555_La_Tanjil_v1.0-exon-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:14448853..14450123	Lupinus angustifolius	exon
rna-TanjilR_12555_La_Tanjil_v1.0-exon-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:14450529..14452100	rna-TanjilR_12555_La_Tanjil_v1.0-exon-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:14450529..14452100	Lupinus angustifolius	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_12555_La_Tanjil_v1.0-CDS-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:14447549..14447643	rna-TanjilR_12555_La_Tanjil_v1.0-CDS-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:14447549..14447643	Lupinus angustifolius	CDS
rna-TanjilR_12555_La_Tanjil_v1.0-CDS-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:14448176..14448519	rna-TanjilR_12555_La_Tanjil_v1.0-CDS-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:14448176..14448519	Lupinus angustifolius	CDS
rna-TanjilR_12555_La_Tanjil_v1.0-CDS-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:14448853..14450123	rna-TanjilR_12555_La_Tanjil_v1.0-CDS-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:14448853..14450123	Lupinus angustifolius	CDS
rna-TanjilR_12555_La_Tanjil_v1.0-CDS-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:14450529..14452100	rna-TanjilR_12555_La_Tanjil_v1.0-CDS-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:14450529..14452100	Lupinus angustifolius	CDS

Homology

[Close]

BLAST of rna-TanjilR_12555 vs. DB:Swiss
Match: EMF1_ARATH (Protein EMBRYONIC FLOWER 1 OS=Arabidopsis thaliana OX=3702 GN=EMF1 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 8.618e-23
Identity = 157/561 (27.99%), Postives = 237/561 (42.25%), Query Frame = 2

Query: 2969 ILLKETTGARNKEKTVEAVEKLGVLKRCS--EQTVLCEEGALDDIPMEIVELLAKNQYERCLPDAE----NRSSIFEKSTVKRKIQMTDGCSAYGKGNLSLLKKGQKKKHEGAHKKSFTTTKREIVKP-SKRKSVHYYSPFDGNNLGTNNARPLG---PPFPHMGSSHLGSARNCNFNGIIEECGSSN---ATLQANVGCSLHNTILQQDNEASR-IWASLTSNHVSLGYDVPKMGVFQPTSASVDITSIQSGALHKQRMRRDIDLNCRNLHVAGPEMLNRNKGPGTVSRTTGRFPFPEKHNGMEPYQNLRGSVDVYSAE-TISAMHLLSLMDAGKQPHTSFNEGAKAQMLRRPYHGNCSTK----LEIG-TSKTHNTPKKQSFDYYSRSYLSDKSGGCFLGSPTFVPSSST---------QRDMKILRDDG-----------AFAGQNSIEFGKKEKAKSSNSFLHDRLDVRGTRKIETPVQHKLDFRGTRETVLPVRVTLGS-SCMVNKNPADFTMPETGNVYMINGVDLKFEKIISKKRPHFPTPRGCKKQRNLKVTK 4528
            +L K+ +GA  K KTV   E  G  +  S   +    EE   DDIPMEIVEL+AKNQYERCLPD E    N+    E +   +   + D    Y  G +SL      +      K   +  +RE   P  ++++ H + P     + +    P G   P   +  SS   S  NC + G +   G+ N   ++ +    C    ++  Q  EAS  IW S           +P    ++P S +++  S   G L  Q    +   N   +   G +      GP         F F  KH       + R  +D +S+E +I A+HLLSL+D   +  T  ++    +  +R +     +K    L+ G +SK+  + K+  FD YS+ +  + S   F  +P    SS +          ++ K  R D             FA  N  +  K +   +SNS +   L    T K E   + K +      +  PV+ + G   C VN+NPADFT+PE GNVYM+ G  LK  K  + K+     P  C KQ  +K TK
Sbjct:  566 VLQKDASGADRKGKTVMVQEHHGAPRSQSHDRKETTTEEQNNDDIPMEIVELMAKNQYERCLPDKEEDVSNKQPSQETAHKSKNALLIDLNETYDNG-ISLEDNNTSR----PPKPCSSNARREEHFPMGRQQNSHDFFPISQPYVPS----PFGIFPPTQENRASSIRFSGHNCQWLGNLPTVGNQNPSPSSFRVLRACDTCQSVPNQYREASHPIWPSSM---------IPPQSQYKPVSLNIN-QSTNPGTL-SQASNNENTWNLNFVAANGKQKC----GPNP------EFSFGCKHAAGVSSSSSR-PIDNFSSESSIPALHLLSLLDPRLRSTTPADQHGNTKFTKRHFPPANQSKEFIELQTGDSSKSAYSTKQIPFDLYSKRFTQEPSRKSFPITPPIGTSSLSFQNASWSPHHQEKKTKRKDTFAPVYNTHEKPVFASSN--DQAKFQLLGASNSMMLP-LKFHMTDK-EKKQKRKAESCNNNASAGPVKNSSGPIVCSVNRNPADFTIPEPGNVYMLTGEHLKVRKRTTFKK----KPAVC-KQDAMKQTK 1086

The following BLAST results are available for this feature:

BLAST of rna-TanjilR_12555 vs. DB:Swiss

BLAST of rna-TanjilR_12555 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 1


Match Name	E-value	Identity	Description
EMF1_ARATH	8.618e-23	27.99	Protein EMBRYONIC FLOWER 1 OS=Arabidopsis thaliana...	[more]

InterPro

Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 273..301
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1069..1093
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 275..301

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Chr_LG14-CM007374.1:14447549..14452100+
coding sequence from alignment at Chr_LG14-CM007374.1:14447549..14452100+

mRNA sequence

>rna-TanjilR_12555_La_Tanjil_v1.0 ID=rna-TanjilR_12555_La_Tanjil_v1.0; Name=rna-TanjilR_12555; organism=Lupinus angustifolius; type=mRNA; length=4552bp
ATGGGATCATATATCCAGATTGACTCAATCTATATAGACCTCACCAATTC
TGATGGTAAGAGAGAGGCAGGCAAATGTGAAAATTTCTCTATACGGTAAG
TCTTGATGCAACAGATTATTACAACAATCCTACTAATCATGCCAAGGACT
AAATTATGGCTTTTAGACTACATTGCTTTATTATGAGCCCctcttttgtt
tgtttattattacTTGTTTATCATCACCACATTGCTTTATCATGGCTCAC
TTCTTTGTCTAGGTTAGTTATACTTCTGCTTGTTTTTTGTGCTATATTGT
CGTCCAGTGAGGGTAGTTCATCAAAGTCTACTGTGGATTACATTTTTCTA
ATCATCACACGAGCTCCTGGTGTATTTTTAGTCCTGCATGTAACTAAAAG
TTGGAAGCCAATTAGTTAATACATGAAAGAGGAACTAGCTATAAATAATC
AAATGGCCGGTGATGCCTAACTATAGAAAGTAATCATGCATGTCATAGTA
TTgggtatatattatattctttcttttaataaaaaataaatagaattaCA
CTTTCTTGCGGGGAATAAGAAGCTATTTGTTTTTCCTCTAAGAATCCTTG
ACACTAATTGATTTATTCTATGTACAGTGGGTATGTGTCTGAAATTCACA
AAAAGGACTGGAAAGCTTGTTGGCCATTTCCAATATACGAGTCTGAGGAG
AATACATCATGCCCACAACTAGATGATCCAAAATACAGATGCTGGTGTTG
TCCAAATTGTCCACAAGAAAGTGCTTCCGAAGACATCAATAAAGATGATA
CCAACTGTAGTACTGCAGCTCTCCAGTCTGCTACTCAGCAAGATCCAATG
CCTAACACTCTTGAGAGAAGAGAAATTGATCTAAATACCTATCCGGGCTG
TGACAGTGATTTCTTACCATTTAgtaatgagaaagaaaagaaagctgGAG
TTGCACTCAACAAAAGAATAGGTAATCTCAATATCAGTTCTATAGGTGTA
TCTTGTTTGTTATTTTACAGTATGTGGTTTGATTTTTTGAGTTCCTTCCA
GACCTCTAGATTGACTTGGAGGGTAATCTCAATCATCCAGTAACTAGTGT
TTCATACCTAAAATTTGTCCAGGCCTCATAAAAGAAGTGAACATAACAAA
AAGATTTAGGTTCAACTTAATAGAACATGTTACAATAAAGCAACagtact
tatatttttttgtatttcttaaTGAGAACTTTGTGTAAACTATAGTCATA
ATGGCAGTATTTATCTCAAAGACTGCAACTTAAGTGGATGTTAATTTGGG
ACAGGCTGCAAAGATAATGGAGTTTCTGGTGTTGAGCGTGCTAGCAATCA
TAAATGCATGGATAAGAGTTCTTCTGAGATTTATAATGAAAGAACACCTT
CTGCAGATAACCAATGCCAGACAGAATTAATCAAAGTTTGTTCAGTGTTG
GGGGACATCCCAACTGCCACCAAGGCAGACAAGACAACTAATCACACAAC
TGGACCTCCTCCTTTATATTCAGTTGCTTGTAATCGCAGTGTGCCTTCAG
GAAGTACGCGCAAAATAGTTGAAAGTGATTTTCAGGGCCTTCATCTGGAA
AAGAAGACCGCTTTTTCCCGTAGGAGACCTCGAAAGGTGCGCTTGATGAC
TCACTTATTAAGCGAAAAAAGTGATCTGAAGACTGACAAGTTAACTATAC
AAGGATCCCCTTCCCATGGTACTTCCAATGCTTCTGAAGGTTCACAGTCA
CACTCAATGATCCCAGGTAAGGTGGATACTCAAGGAGAGTCGACTCTGAC
AAATATGTGTCACAGTAAAAAAAGGAAGTTCATTCTGGATGAAGCACCTG
GTCCTGAAGATATGTGTGTTCAGGGGGTTGCAATCGAAGTTCAAAAGGGT
GATGCAACCAAATACAAAGATGTGATGGCAGGAATAGGTTTACAAGATGT
CACAAGGGGATTCCAAAGTAAATCTGAAATTGAAAGAAACCATATCATGG
GTAAGAAGAGTAGAAAGATTAAAGTCATTGATAATCACTTAATTCCTGAG
CCACACCAAGGAAAGCAAAGAGTAAATGAGGACACTGTATATCCTGCGGA
TAAGGCGTATGCATCTAAAACTCTTTATTCTAGATTTACTCCTCGTGCAA
TCACAGAGAAAGGGATGGATAAATTTCCTTTCCATGCTCCAAGAACAGAA
AATGAGTTTAGTTTATCCAAGGGAAAGGGGAAAATATTGCAAACCCATAG
GGAGATGGGTTCTTTATCCTGTCAGAAAAATGCCACACTTGTCAAGAATC
CATTTGCATATTCAGGGGGAAAAATCATGTCAAATATGCCGGTAACCATT
CCAATTCCTTCGGCCCAGGGTACATTGAATGGAAAAGGAGTGGAGGAGGG
GCTGCAGCATTCTCTAAACAGCCAATTGGCAGTACAAATTTACGACAAAA
AATGTATCCATCAAACTGAAATTCGACTACCTTTCGGATTGCCTTTGCAA
GAGGACACTTCGAATGTACATCAACAGAAAAGGAAAGACAGTGAAACCAT
TGTCTATGGAGGAGTTCACTGTGAAGTAAGTAGCTGGATCCCTTAATAAA
AGGAATACACATTACCTCTCATGATGAAAACGAGATGCATTTAATAgtga
tatgatttatttattttttcgttATGGTTAAATATGAAATGGGCAGAATT
GATCCTTAGATTGTCAAGTGTTTATGCATGCTAGTTTATTTAGATTCTCA
TATGAATCCccataacattttttgttgctAATTGATAATGGGtacaaatt
gatttttgtactcCCTTCATGCACCATTCCTTTTCAGTTTATTTGTTAGC
AATGAACCAATTCTATAAAATTGAACTTCTTGAACCTGAGATTTTCATAG
CATGACTGCCTTCTTTTATAGAATCTTGAACAATTCATAGTAAACATGTT
TCTCAGATGATCATTGTTATCCTTTTGAAGGAAACTACTGGTGcgagaaa
caaagaaaaaactGTTGAAGCCGTGGAAAAATTGGGTGTTTTGAAAAGAT
GTAGCGAACAAACAGTGTTGTGTGAGGAGGGAGCACTAGATGACATACCC
ATGGAAATTGTGGAGCTTTTGGCAAAGAATCAGTATGAGAGGTGTCTTCC
TGATGCAGAAAATAGAAGCTCCATTTTTGAAAAATCCACTGTCAAAAGGA
AAATACAGATGACAGATGGTTGTAGTGCATATGGCAAAGGCAACTTGAGC
TTGTTAAAAAAGGGGCAGAAGAAAAAACATGAGGGTGCCCATAAGAAAAG
CTTCACAACCACAAAAAGAGAGATTGTTAAGCCTAGCAAAAGAAAGTCAG
TTCATTACTATTCtccatttgatggaaacaatttAGGTACGAATAATGCA
CGTCCACTTGGACCCCCCTTTCCACATATGGGTTCTAGCCACCTTGGCAG
TGCTCGAAATTGTAACTTCAATGGTATTATCGAAGAGTGTGGATCCTCTA
ATGCTACTTTGCAAGCCAATGTAGGATGCAGCTTACATAATACTATCTTA
CAGCAGGATAATGAAGCTTCTCGCATTTGGGCATCTTTGACCTCAAATCA
TGTTTCCCTAGGATATGATGTACCCAAAATGGGTGTTTTTCAGCCTACTA
GTGCTAGTGTGGACATCACTTCAATTCAATCTGGTGCACTTCACAAGCAG
AGAATGAGGAGGGATATTGATCTTAACTGCAGAAACTTGCATGTTGCTGG
CCCAGAAATGCTTAATAGGAATAAAGGTCCTGGAACCGTCAGCAGGACGA
CTGGAAGATTCCCATTTCCTGAAAAACATAACGGAATGGAGCCTTATCAA
AATTTGAGGGGATCTGTGGATGTGTATTCAGCTGAAACAATATCAGCCAT
GCATTTACTTAGCCTTATGGATGCAGGCAAGCAGCCGCATACATCCTTCA
ATGAGGGTGCCAAGGCTCAAATGCTTAGAAGACCTTACCATGGTAATTGC
AGTACCAAGTTGGAGATTGGTACATCTAAGACCCATAATACCCCAAAAAA
GCAATCATTCGATTATTACAGCAGAAGTTACTTGTCAGATAAATCAGGTG
GTTGTTTTCTAGGCTCTCCAACCTTTGTTCCATCTTCATCAACCCAGCgt
gatatgaaaattttaagagATGATGGTGCCTTTGCTGGTCAAAATTCAAT
AGAAtttggaaagaaagaaaaggcgaagagctcaaactcattctTGCATG
ATAGATTGGATGTTCGTGGTACCCGTAAAATAGAAACTCCAGTGCAACAT
AAATTGGATTTTCGTGGTACCCGTGAAACTGTGTTGCCTGTGAGAGTCAC
TTTGGGGAGCTCATGTATGGTGAACAAAAACCCAGCTGATTTCACTATGC
CAGAAACAGGGAATGTCTACATGATCAATGGAGTGGACCTGAAATTCGAG
AAGATTATTTCCAAGAAGAGGCCCCACTTCCCAACTCCACGTGGATGCAA
GAAGCAGAGAAATTTGAAGGTAACTAAAGCGAAAGAACATTCAAAACATT
GA

protein sequence of rna-TanjilR_12555_La_Tanjil_v1.0

>rna-TanjilR_12555_La_Tanjil_v1.0 ID=rna-TanjilR_12555_La_Tanjil_v1.0; Name=rna-TanjilR_12555_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=1093bp
MGSYIQIDSIYIDLTNSDGKREAGKCENFSIRGYVSEIHKKDWKACWPFP
IYESEENTSCPQLDDPKYRCWCCPNCPQESASEDINKDDTNCSTAALQSA
TQQDPMPNTLERREIDLNTYPGCDSDFLPFSNEKEKKAGVALNKRIGCKD
NGVSGVERASNHKCMDKSSSEIYNERTPSADNQCQTELIKVCSVLGDIPT
ATKADKTTNHTTGPPPLYSVACNRSVPSGSTRKIVESDFQGLHLEKKTAF
SRRRPRKVRLMTHLLSEKSDLKTDKLTIQGSPSHGTSNASEGSQSHSMIP
GKVDTQGESTLTNMCHSKKRKFILDEAPGPEDMCVQGVAIEVQKGDATKY
KDVMAGIGLQDVTRGFQSKSEIERNHIMGKKSRKIKVIDNHLIPEPHQGK
QRVNEDTVYPADKAYASKTLYSRFTPRAITEKGMDKFPFHAPRTENEFSL
SKGKGKILQTHREMGSLSCQKNATLVKNPFAYSGGKIMSNMPVTIPIPSA
QGTLNGKGVEEGLQHSLNSQLAVQIYDKKCIHQTEIRLPFGLPLQEDTSN
VHQQKRKDSETIVYGGVHCEETTGARNKEKTVEAVEKLGVLKRCSEQTVL
CEEGALDDIPMEIVELLAKNQYERCLPDAENRSSIFEKSTVKRKIQMTDG
CSAYGKGNLSLLKKGQKKKHEGAHKKSFTTTKREIVKPSKRKSVHYYSPF
DGNNLGTNNARPLGPPFPHMGSSHLGSARNCNFNGIIEECGSSNATLQAN
VGCSLHNTILQQDNEASRIWASLTSNHVSLGYDVPKMGVFQPTSASVDIT
SIQSGALHKQRMRRDIDLNCRNLHVAGPEMLNRNKGPGTVSRTTGRFPFP
EKHNGMEPYQNLRGSVDVYSAETISAMHLLSLMDAGKQPHTSFNEGAKAQ
MLRRPYHGNCSTKLEIGTSKTHNTPKKQSFDYYSRSYLSDKSGGCFLGSP
TFVPSSSTQRDMKILRDDGAFAGQNSIEFGKKEKAKSSNSFLHDRLDVRG
TRKIETPVQHKLDFRGTRETVLPVRVTLGSSCMVNKNPADFTMPETGNVY
MINGVDLKFEKIISKKRPHFPTPRGCKKQRNLKVTKAKEHSKH

mRNA from alignment at Chr_LG14-CM007374.1:14447549..14452100+

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna-TanjilR_12555_La_Tanjil_v1.0 ID=rna-TanjilR_12555_La_Tanjil_v1.0; Name=rna-TanjilR_12555; organism=Lupinus angustifolius; type=mRNA; length=4552bp; location=Sequence derived from: Chr_LG14-CM007374.1:14447549..14452100+ (Lupinus angustifolius
ATGGGATCATATATCCAGATTGACTCAATCTATATAGACCTCACCAATTC
TGATGGTAAGAGAGAGGCAGGCAAATGTGAAAATTTCTCTATACGGTAAG
TCTTGATGCAACAGATTATTACAACAATCCTACTAATCATGCCAAGGACT
AAATTATGGCTTTTAGACTACATTGCTTTATTATGAGCCCctcttttgtt
tgtttattattacTTGTTTATCATCACCACATTGCTTTATCATGGCTCAC
TTCTTTGTCTAGGTTAGTTATACTTCTGCTTGTTTTTTGTGCTATATTGT
CGTCCAGTGAGGGTAGTTCATCAAAGTCTACTGTGGATTACATTTTTCTA
ATCATCACACGAGCTCCTGGTGTATTTTTAGTCCTGCATGTAACTAAAAG
TTGGAAGCCAATTAGTTAATACATGAAAGAGGAACTAGCTATAAATAATC
AAATGGCCGGTGATGCCTAACTATAGAAAGTAATCATGCATGTCATAGTA
TTgggtatatattatattctttcttttaataaaaaataaatagaattaCA
CTTTCTTGCGGGGAATAAGAAGCTATTTGTTTTTCCTCTAAGAATCCTTG
ACACTAATTGATTTATTCTATGTACAGTGGGTATGTGTCTGAAATTCACA
AAAAGGACTGGAAAGCTTGTTGGCCATTTCCAATATACGAGTCTGAGGAG
AATACATCATGCCCACAACTAGATGATCCAAAATACAGATGCTGGTGTTG
TCCAAATTGTCCACAAGAAAGTGCTTCCGAAGACATCAATAAAGATGATA
CCAACTGTAGTACTGCAGCTCTCCAGTCTGCTACTCAGCAAGATCCAATG
CCTAACACTCTTGAGAGAAGAGAAATTGATCTAAATACCTATCCGGGCTG
TGACAGTGATTTCTTACCATTTAgtaatgagaaagaaaagaaagctgGAG
TTGCACTCAACAAAAGAATAGGTAATCTCAATATCAGTTCTATAGGTGTA
TCTTGTTTGTTATTTTACAGTATGTGGTTTGATTTTTTGAGTTCCTTCCA
GACCTCTAGATTGACTTGGAGGGTAATCTCAATCATCCAGTAACTAGTGT
TTCATACCTAAAATTTGTCCAGGCCTCATAAAAGAAGTGAACATAACAAA
AAGATTTAGGTTCAACTTAATAGAACATGTTACAATAAAGCAACagtact
tatatttttttgtatttcttaaTGAGAACTTTGTGTAAACTATAGTCATA
ATGGCAGTATTTATCTCAAAGACTGCAACTTAAGTGGATGTTAATTTGGG
ACAGGCTGCAAAGATAATGGAGTTTCTGGTGTTGAGCGTGCTAGCAATCA
TAAATGCATGGATAAGAGTTCTTCTGAGATTTATAATGAAAGAACACCTT
CTGCAGATAACCAATGCCAGACAGAATTAATCAAAGTTTGTTCAGTGTTG
GGGGACATCCCAACTGCCACCAAGGCAGACAAGACAACTAATCACACAAC
TGGACCTCCTCCTTTATATTCAGTTGCTTGTAATCGCAGTGTGCCTTCAG
GAAGTACGCGCAAAATAGTTGAAAGTGATTTTCAGGGCCTTCATCTGGAA
AAGAAGACCGCTTTTTCCCGTAGGAGACCTCGAAAGGTGCGCTTGATGAC
TCACTTATTAAGCGAAAAAAGTGATCTGAAGACTGACAAGTTAACTATAC
AAGGATCCCCTTCCCATGGTACTTCCAATGCTTCTGAAGGTTCACAGTCA
CACTCAATGATCCCAGGTAAGGTGGATACTCAAGGAGAGTCGACTCTGAC
AAATATGTGTCACAGTAAAAAAAGGAAGTTCATTCTGGATGAAGCACCTG
GTCCTGAAGATATGTGTGTTCAGGGGGTTGCAATCGAAGTTCAAAAGGGT
GATGCAACCAAATACAAAGATGTGATGGCAGGAATAGGTTTACAAGATGT
CACAAGGGGATTCCAAAGTAAATCTGAAATTGAAAGAAACCATATCATGG
GTAAGAAGAGTAGAAAGATTAAAGTCATTGATAATCACTTAATTCCTGAG
CCACACCAAGGAAAGCAAAGAGTAAATGAGGACACTGTATATCCTGCGGA
TAAGGCGTATGCATCTAAAACTCTTTATTCTAGATTTACTCCTCGTGCAA
TCACAGAGAAAGGGATGGATAAATTTCCTTTCCATGCTCCAAGAACAGAA
AATGAGTTTAGTTTATCCAAGGGAAAGGGGAAAATATTGCAAACCCATAG
GGAGATGGGTTCTTTATCCTGTCAGAAAAATGCCACACTTGTCAAGAATC
CATTTGCATATTCAGGGGGAAAAATCATGTCAAATATGCCGGTAACCATT
CCAATTCCTTCGGCCCAGGGTACATTGAATGGAAAAGGAGTGGAGGAGGG
GCTGCAGCATTCTCTAAACAGCCAATTGGCAGTACAAATTTACGACAAAA
AATGTATCCATCAAACTGAAATTCGACTACCTTTCGGATTGCCTTTGCAA
GAGGACACTTCGAATGTACATCAACAGAAAAGGAAAGACAGTGAAACCAT
TGTCTATGGAGGAGTTCACTGTGAAGTAAGTAGCTGGATCCCTTAATAAA
AGGAATACACATTACCTCTCATGATGAAAACGAGATGCATTTAATAgtga
tatgatttatttattttttcgttATGGTTAAATATGAAATGGGCAGAATT
GATCCTTAGATTGTCAAGTGTTTATGCATGCTAGTTTATTTAGATTCTCA
TATGAATCCccataacattttttgttgctAATTGATAATGGGtacaaatt
gatttttgtactcCCTTCATGCACCATTCCTTTTCAGTTTATTTGTTAGC
AATGAACCAATTCTATAAAATTGAACTTCTTGAACCTGAGATTTTCATAG
CATGACTGCCTTCTTTTATAGAATCTTGAACAATTCATAGTAAACATGTT
TCTCAGATGATCATTGTTATCCTTTTGAAGGAAACTACTGGTGcgagaaa
caaagaaaaaactGTTGAAGCCGTGGAAAAATTGGGTGTTTTGAAAAGAT
GTAGCGAACAAACAGTGTTGTGTGAGGAGGGAGCACTAGATGACATACCC
ATGGAAATTGTGGAGCTTTTGGCAAAGAATCAGTATGAGAGGTGTCTTCC
TGATGCAGAAAATAGAAGCTCCATTTTTGAAAAATCCACTGTCAAAAGGA
AAATACAGATGACAGATGGTTGTAGTGCATATGGCAAAGGCAACTTGAGC
TTGTTAAAAAAGGGGCAGAAGAAAAAACATGAGGGTGCCCATAAGAAAAG
CTTCACAACCACAAAAAGAGAGATTGTTAAGCCTAGCAAAAGAAAGTCAG
TTCATTACTATTCtccatttgatggaaacaatttAGGTACGAATAATGCA
CGTCCACTTGGACCCCCCTTTCCACATATGGGTTCTAGCCACCTTGGCAG
TGCTCGAAATTGTAACTTCAATGGTATTATCGAAGAGTGTGGATCCTCTA
ATGCTACTTTGCAAGCCAATGTAGGATGCAGCTTACATAATACTATCTTA
CAGCAGGATAATGAAGCTTCTCGCATTTGGGCATCTTTGACCTCAAATCA
TGTTTCCCTAGGATATGATGTACCCAAAATGGGTGTTTTTCAGCCTACTA
GTGCTAGTGTGGACATCACTTCAATTCAATCTGGTGCACTTCACAAGCAG
AGAATGAGGAGGGATATTGATCTTAACTGCAGAAACTTGCATGTTGCTGG
CCCAGAAATGCTTAATAGGAATAAAGGTCCTGGAACCGTCAGCAGGACGA
CTGGAAGATTCCCATTTCCTGAAAAACATAACGGAATGGAGCCTTATCAA
AATTTGAGGGGATCTGTGGATGTGTATTCAGCTGAAACAATATCAGCCAT
GCATTTACTTAGCCTTATGGATGCAGGCAAGCAGCCGCATACATCCTTCA
ATGAGGGTGCCAAGGCTCAAATGCTTAGAAGACCTTACCATGGTAATTGC
AGTACCAAGTTGGAGATTGGTACATCTAAGACCCATAATACCCCAAAAAA
GCAATCATTCGATTATTACAGCAGAAGTTACTTGTCAGATAAATCAGGTG
GTTGTTTTCTAGGCTCTCCAACCTTTGTTCCATCTTCATCAACCCAGCgt
gatatgaaaattttaagagATGATGGTGCCTTTGCTGGTCAAAATTCAAT
AGAAtttggaaagaaagaaaaggcgaagagctcaaactcattctTGCATG
ATAGATTGGATGTTCGTGGTACCCGTAAAATAGAAACTCCAGTGCAACAT
AAATTGGATTTTCGTGGTACCCGTGAAACTGTGTTGCCTGTGAGAGTCAC
TTTGGGGAGCTCATGTATGGTGAACAAAAACCCAGCTGATTTCACTATGC
CAGAAACAGGGAATGTCTACATGATCAATGGAGTGGACCTGAAATTCGAG
AAGATTATTTCCAAGAAGAGGCCCCACTTCCCAACTCCACGTGGATGCAA
GAAGCAGAGAAATTTGAAGGTAACTAAAGCGAAAGAACATTCAAAACATT
GA

Coding sequence (CDS) from alignment at Chr_LG14-CM007374.1:14447549..14452100+

>rna-TanjilR_12555_La_Tanjil_v1.0 ID=rna-TanjilR_12555_La_Tanjil_v1.0; Name=rna-TanjilR_12555; organism=Lupinus angustifolius; type=CDS; length=3282bp; location=Sequence derived from: Chr_LG14-CM007374.1:14447549..14452100+ (Lupinus angustifolius
ATGGGATCATATATCCAGATTGACTCAATCTATATAGACCTCACCAATTC
TGATGGTAAGAGAGAGGCAGGCAAATGTGAAAATTTCTCTATACGTGGGT
ATGTGTCTGAAATTCACAAAAAGGACTGGAAAGCTTGTTGGCCATTTCCA
ATATACGAGTCTGAGGAGAATACATCATGCCCACAACTAGATGATCCAAA
ATACAGATGCTGGTGTTGTCCAAATTGTCCACAAGAAAGTGCTTCCGAAG
ACATCAATAAAGATGATACCAACTGTAGTACTGCAGCTCTCCAGTCTGCT
ACTCAGCAAGATCCAATGCCTAACACTCTTGAGAGAAGAGAAATTGATCT
AAATACCTATCCGGGCTGTGACAGTGATTTCTTACCATTTAgtaatgaga
aagaaaagaaagctgGAGTTGCACTCAACAAAAGAATAGGCTGCAAAGAT
AATGGAGTTTCTGGTGTTGAGCGTGCTAGCAATCATAAATGCATGGATAA
GAGTTCTTCTGAGATTTATAATGAAAGAACACCTTCTGCAGATAACCAAT
GCCAGACAGAATTAATCAAAGTTTGTTCAGTGTTGGGGGACATCCCAACT
GCCACCAAGGCAGACAAGACAACTAATCACACAACTGGACCTCCTCCTTT
ATATTCAGTTGCTTGTAATCGCAGTGTGCCTTCAGGAAGTACGCGCAAAA
TAGTTGAAAGTGATTTTCAGGGCCTTCATCTGGAAAAGAAGACCGCTTTT
TCCCGTAGGAGACCTCGAAAGGTGCGCTTGATGACTCACTTATTAAGCGA
AAAAAGTGATCTGAAGACTGACAAGTTAACTATACAAGGATCCCCTTCCC
ATGGTACTTCCAATGCTTCTGAAGGTTCACAGTCACACTCAATGATCCCA
GGTAAGGTGGATACTCAAGGAGAGTCGACTCTGACAAATATGTGTCACAG
TAAAAAAAGGAAGTTCATTCTGGATGAAGCACCTGGTCCTGAAGATATGT
GTGTTCAGGGGGTTGCAATCGAAGTTCAAAAGGGTGATGCAACCAAATAC
AAAGATGTGATGGCAGGAATAGGTTTACAAGATGTCACAAGGGGATTCCA
AAGTAAATCTGAAATTGAAAGAAACCATATCATGGGTAAGAAGAGTAGAA
AGATTAAAGTCATTGATAATCACTTAATTCCTGAGCCACACCAAGGAAAG
CAAAGAGTAAATGAGGACACTGTATATCCTGCGGATAAGGCGTATGCATC
TAAAACTCTTTATTCTAGATTTACTCCTCGTGCAATCACAGAGAAAGGGA
TGGATAAATTTCCTTTCCATGCTCCAAGAACAGAAAATGAGTTTAGTTTA
TCCAAGGGAAAGGGGAAAATATTGCAAACCCATAGGGAGATGGGTTCTTT
ATCCTGTCAGAAAAATGCCACACTTGTCAAGAATCCATTTGCATATTCAG
GGGGAAAAATCATGTCAAATATGCCGGTAACCATTCCAATTCCTTCGGCC
CAGGGTACATTGAATGGAAAAGGAGTGGAGGAGGGGCTGCAGCATTCTCT
AAACAGCCAATTGGCAGTACAAATTTACGACAAAAAATGTATCCATCAAA
CTGAAATTCGACTACCTTTCGGATTGCCTTTGCAAGAGGACACTTCGAAT
GTACATCAACAGAAAAGGAAAGACAGTGAAACCATTGTCTATGGAGGAGT
TCACTGTGAAGAAACTACTGGTGcgagaaacaaagaaaaaactGTTGAAG
CCGTGGAAAAATTGGGTGTTTTGAAAAGATGTAGCGAACAAACAGTGTTG
TGTGAGGAGGGAGCACTAGATGACATACCCATGGAAATTGTGGAGCTTTT
GGCAAAGAATCAGTATGAGAGGTGTCTTCCTGATGCAGAAAATAGAAGCT
CCATTTTTGAAAAATCCACTGTCAAAAGGAAAATACAGATGACAGATGGT
TGTAGTGCATATGGCAAAGGCAACTTGAGCTTGTTAAAAAAGGGGCAGAA
GAAAAAACATGAGGGTGCCCATAAGAAAAGCTTCACAACCACAAAAAGAG
AGATTGTTAAGCCTAGCAAAAGAAAGTCAGTTCATTACTATTCtccattt
gatggaaacaatttAGGTACGAATAATGCACGTCCACTTGGACCCCCCTT
TCCACATATGGGTTCTAGCCACCTTGGCAGTGCTCGAAATTGTAACTTCA
ATGGTATTATCGAAGAGTGTGGATCCTCTAATGCTACTTTGCAAGCCAAT
GTAGGATGCAGCTTACATAATACTATCTTACAGCAGGATAATGAAGCTTC
TCGCATTTGGGCATCTTTGACCTCAAATCATGTTTCCCTAGGATATGATG
TACCCAAAATGGGTGTTTTTCAGCCTACTAGTGCTAGTGTGGACATCACT
TCAATTCAATCTGGTGCACTTCACAAGCAGAGAATGAGGAGGGATATTGA
TCTTAACTGCAGAAACTTGCATGTTGCTGGCCCAGAAATGCTTAATAGGA
ATAAAGGTCCTGGAACCGTCAGCAGGACGACTGGAAGATTCCCATTTCCT
GAAAAACATAACGGAATGGAGCCTTATCAAAATTTGAGGGGATCTGTGGA
TGTGTATTCAGCTGAAACAATATCAGCCATGCATTTACTTAGCCTTATGG
ATGCAGGCAAGCAGCCGCATACATCCTTCAATGAGGGTGCCAAGGCTCAA
ATGCTTAGAAGACCTTACCATGGTAATTGCAGTACCAAGTTGGAGATTGG
TACATCTAAGACCCATAATACCCCAAAAAAGCAATCATTCGATTATTACA
GCAGAAGTTACTTGTCAGATAAATCAGGTGGTTGTTTTCTAGGCTCTCCA
ACCTTTGTTCCATCTTCATCAACCCAGCgtgatatgaaaattttaagagA
TGATGGTGCCTTTGCTGGTCAAAATTCAATAGAAtttggaaagaaagaaa
aggcgaagagctcaaactcattctTGCATGATAGATTGGATGTTCGTGGT
ACCCGTAAAATAGAAACTCCAGTGCAACATAAATTGGATTTTCGTGGTAC
CCGTGAAACTGTGTTGCCTGTGAGAGTCACTTTGGGGAGCTCATGTATGG
TGAACAAAAACCCAGCTGATTTCACTATGCCAGAAACAGGGAATGTCTAC
ATGATCAATGGAGTGGACCTGAAATTCGAGAAGATTATTTCCAAGAAGAG
GCCCCACTTCCCAACTCCACGTGGATGCAAGAAGCAGAGAAATTTGAAGG
TAACTAAAGCGAAAGAACATTCAAAACATTGA

Search form

rna-TanjilR_12555