|
Transcript Overview
Name | rna-TanjilR_12367 |
Unique Name | rna-TanjilR_12367_La_Tanjil_v1.0 |
Type | mRNA |
Organism | Lupinus angustifolius (blue lupin) |
Sequence length | 2458 |
Product | hypothetical protein |
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
rna-TanjilR_12367 | rna-TanjilR_12367_La_Tanjil_v1.0-protein | Lupinus angustifolius | polypeptide |
rna-TanjilR_12367_La_Tanjil_v1.0 | rna-TanjilR_12367_La_Tanjil_v1.0 | Lupinus angustifolius | polypeptide |
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
rna-TanjilR_12367_La_Tanjil_v1.0-exon-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15777188..15777220 | rna-TanjilR_12367_La_Tanjil_v1.0-exon-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15777188..15777220 | Lupinus angustifolius | exon |
rna-TanjilR_12367_La_Tanjil_v1.0-exon-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15777828..15778008 | rna-TanjilR_12367_La_Tanjil_v1.0-exon-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15777828..15778008 | Lupinus angustifolius | exon |
rna-TanjilR_12367_La_Tanjil_v1.0-exon-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15778651..15778798 | rna-TanjilR_12367_La_Tanjil_v1.0-exon-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15778651..15778798 | Lupinus angustifolius | exon |
rna-TanjilR_12367_La_Tanjil_v1.0-exon-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15778877..15778952 | rna-TanjilR_12367_La_Tanjil_v1.0-exon-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15778877..15778952 | Lupinus angustifolius | exon |
rna-TanjilR_12367_La_Tanjil_v1.0-exon-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15779047..15779162 | rna-TanjilR_12367_La_Tanjil_v1.0-exon-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15779047..15779162 | Lupinus angustifolius | exon |
rna-TanjilR_12367_La_Tanjil_v1.0-exon-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15779280..15779371 | rna-TanjilR_12367_La_Tanjil_v1.0-exon-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15779280..15779371 | Lupinus angustifolius | exon |
rna-TanjilR_12367_La_Tanjil_v1.0-exon-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15779551..15779645 | rna-TanjilR_12367_La_Tanjil_v1.0-exon-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15779551..15779645 | Lupinus angustifolius | exon |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
rna-TanjilR_12367_La_Tanjil_v1.0-CDS-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15777188..15777220 | rna-TanjilR_12367_La_Tanjil_v1.0-CDS-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15777188..15777220 | Lupinus angustifolius | CDS |
rna-TanjilR_12367_La_Tanjil_v1.0-CDS-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15777828..15778008 | rna-TanjilR_12367_La_Tanjil_v1.0-CDS-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15777828..15778008 | Lupinus angustifolius | CDS |
rna-TanjilR_12367_La_Tanjil_v1.0-CDS-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15778651..15778798 | rna-TanjilR_12367_La_Tanjil_v1.0-CDS-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15778651..15778798 | Lupinus angustifolius | CDS |
rna-TanjilR_12367_La_Tanjil_v1.0-CDS-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15778877..15778952 | rna-TanjilR_12367_La_Tanjil_v1.0-CDS-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15778877..15778952 | Lupinus angustifolius | CDS |
rna-TanjilR_12367_La_Tanjil_v1.0-CDS-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15779047..15779162 | rna-TanjilR_12367_La_Tanjil_v1.0-CDS-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15779047..15779162 | Lupinus angustifolius | CDS |
rna-TanjilR_12367_La_Tanjil_v1.0-CDS-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15779280..15779371 | rna-TanjilR_12367_La_Tanjil_v1.0-CDS-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15779280..15779371 | Lupinus angustifolius | CDS |
rna-TanjilR_12367_La_Tanjil_v1.0-CDS-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15779551..15779645 | rna-TanjilR_12367_La_Tanjil_v1.0-CDS-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15779551..15779645 | Lupinus angustifolius | CDS |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR013144 | CRA domain | SMART | SM00757 | toby_final6 | coord: 119..197 e-value: 1.5E-16 score: 70.9 |
IPR006595 | CTLH, C-terminal LisH motif | SMART | SM00668 | ctlh | coord: 66..123 e-value: 6.1E-9 score: 45.7 |
IPR006595 | CTLH, C-terminal LisH motif | PROSITE | PS50897 | CTLH | coord: 66..123 score: 11.706 |
IPR024964 | CTLH/CRA C-terminal to LisH motif domain | PFAM | PF10607 | CLTH | coord: 67..184 e-value: 5.9E-27 score: 94.4 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_12367_La_Tanjil_v1.0 ID=rna-TanjilR_12367_La_Tanjil_v1.0; Name=rna-TanjilR_12367; organism=Lupinus angustifolius; type=mRNA; length=2458bp ATGGACCCCGATCCTCGTCAATACGAAAACATCGTACGTTTATTCTTCTC CATTTTCATTATTAAGaccccaattttttatttatttttttgttgttgtg attTTTAGAATATCTCAATCCAAACCTAGGTCAGTAATTAATAACCTATG TTTTGTACTCCTTTCACTTGATTTTTTCAccgtaaaaaaaaaagaataaa gtgcctttgtttttttttcactCTGTACATTTAGCTcgtattttatatat attatacatgatAGCAGTTAGGGCAACAATGACATTGTCATCGGCTAATA GATTCATCAAGAGGATTGAGGATTATTACATTGGTGAagatttttttcca attttttctGTGTATTATAGATATGCATAAATTATTGGTTAGGTTTTTAC TAAAAAACTGAAGCTGACAAAAATAGGTGAAATTTAGCTTTTATAGAAGC TATATTGTTCAGCTTCTAAAAAAACACTTCTTTAGAGTATCTTGGAATCA CTTTTTGTTAGCctaaacaataattatttatttttgttgttgaaagaaaG CATAATTGAGCTGAGACATTAACCTGTGCAGTATGCTCTATTGGGTTTCT ATTTTTCTGGTTGTATTAACTCTTTTGTCATAATTTATAGATAAGTTCTT TACTTTCTTCTGGCTACATGAATTTACAGGCTataaatgataatgaaatc CACGATGTCGTTCTGTCATATCTCATACATAACTGCTACAATGAATCAGT GGAGTCATTCATTGCTTGCACGGGGATGAAACAGCCGACAGATTATTTGG AGAACatggagaaaagaaaaagtaggCTTCTTGTTATCGATATTTCACTG TAAAAGGTTAATTCATGACTATCGGTTGCTTGCTAAGCATACTTTATTTG CTTGGGAAGCTTAGTGTCCATTAACTGTTCATTAATAACTACTCTTGGAA AATTTTGCATCATTTACAAATACACATTAGACTACTCTACCACTGAAGGT GGATGCTAATTCATTACTTGCCTAATACCACTTGAAACATGTGCAGTCTT TTGAAATAGCAGCTTACTATTTGTCTTGAATAAATCGAATTATGATCATT TTTATTGCAGttcatttttatcatgttaATATATCAAGTGGcctttttct atataaaaatgatatttctcTTGATGGTTTTATATTTGTTTCGGTCATCC CCTATGcaacaatcaagcctttatCTCACTGGTTGGGGTTGGCTACATGG ATTGAATAACGCCATAATGCTCTTTCATAAATCATGTTCGTTGACAAAGC ATTGAttactaaatctttcttaaccATTGCACTTATGGTTTTTATTTGTA TGGGAGTACAAGTGTTCTGGGAAATGCACCGTACTTCtttgaagttattt ttttattggagcCTATTATAGATAGTAAAGATCTGCTTGATGCTAAATTT CATTTGTCTTTAGGAATCTTTCATTGTGCACTAGAGGGCAATGCACTTAA GGCTATTGAGCTTACTGAGAAGCTAGCACCGGATATTCTAAACAAAAATA AGGATTTAGAGTTTGATCTTCTTAGCCTTCATTTTGTTGAGCTTGCACGC TGTAAGAAATGGTGAGCAGAGATTAATTTTGTCTTCAAGATAACATGCTC TAAACTTCCTTCTTTCTTAGAATTTCATTCCATTGGCAGCACGGAAGCTT TGGAATTTGCTCAGACCAAGTTGAGCCCTTTTGGAAAGGAGCAAAAATAT ATGGAAAAGCTTCAAGTAAGTTTACATGTTGCAAAACATTTTTGTGATGG ACTGATGTGAGTTTGCATGCACTTATGATTGGATAAATATTAAGTTGCCA AAATTGCAGGACTTTATGGCCCTTCTTGCTTATAAGGAGCCAGAGAAATC CCCAGTGTTTCATCTACTTAGCTCAGAGTTTAGGCAACAGGTTACAGATA GTTTAAATCGAGCAATTCTTGGTTGGTTAACTTGAATTctaagtattttt ttgtttaatatagtTCATCGCAAATATATTTGCTTTTGTTTACCTGTGTT AagtatttccttttctttttcgtGTATGGTGGTCATTTTCAGCACACTTG AACCTTCCCAGCTATGCGGCAATGGAAAGGCTAATACAGCAGGCTACAGT TGTCAGACAATGCTTGACTCAGGAGCCTGGCAAGGTAATGGGCATAGCTT ACTTAATTTAAGAATTGAAACATTTTTGTCCAACAAACCTTTGGATCGTT CGTCTCTTTCTGGGTGAGATCACTTAGCATTTGCCCCGCGAAAGGTGTTA TAACTGCTATATTATGCAGAGTACCTCTCTGTTCAAGCTAAATCTTTCAT TTACTCTTTGCAGGATGGGCCTCCACCATTTTCCTTGAAGGATTTTATCA GAAGTTGATGGGAAACAATCGAATTTCCACGGGCAATTGGGGAATGAAGC ATGTTTAA back to topprotein sequence of rna-TanjilR_12367_La_Tanjil_v1.0 >rna-TanjilR_12367_La_Tanjil_v1.0 ID=rna-TanjilR_12367_La_Tanjil_v1.0; Name=rna-TanjilR_12367_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=246bp MDPDPRQYENIISSLLSSGYMNLQAINDNEIHDVVLSYLIHNCYNESVES FIACTGMKQPTDYLENMEKRKRIFHCALEGNALKAIELTEKLAPDILNKN KDLEFDLLSLHFVELARCKKCTEALEFAQTKLSPFGKEQKYMEKLQDFMA LLAYKEPEKSPVFHLLSSEFRQQVTDSLNRAILGCTLEPSQLCGNGKANT AGYSCQTMLDSGAWQGWASTIFLEGFYQKLMGNNRISTGNWGMKHV back to topmRNA from alignment at Chr_LG14-CM007374.1:15777188..15779645+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna-TanjilR_12367_La_Tanjil_v1.0 ID=rna-TanjilR_12367_La_Tanjil_v1.0; Name=rna-TanjilR_12367; organism=Lupinus angustifolius; type=mRNA; length=2458bp; location=Sequence derived from: Chr_LG14-CM007374.1:15777188..15779645+ (Lupinus angustifolius ATGGACCCCGATCCTCGTCAATACGAAAACATCGTACGTTTATTCTTCTC
CATTTTCATTATTAAGaccccaattttttatttatttttttgttgttgtg
attTTTAGAATATCTCAATCCAAACCTAGGTCAGTAATTAATAACCTATG
TTTTGTACTCCTTTCACTTGATTTTTTCAccgtaaaaaaaaaagaataaa
gtgcctttgtttttttttcactCTGTACATTTAGCTcgtattttatatat
attatacatgatAGCAGTTAGGGCAACAATGACATTGTCATCGGCTAATA
GATTCATCAAGAGGATTGAGGATTATTACATTGGTGAagatttttttcca
attttttctGTGTATTATAGATATGCATAAATTATTGGTTAGGTTTTTAC
TAAAAAACTGAAGCTGACAAAAATAGGTGAAATTTAGCTTTTATAGAAGC
TATATTGTTCAGCTTCTAAAAAAACACTTCTTTAGAGTATCTTGGAATCA
CTTTTTGTTAGCctaaacaataattatttatttttgttgttgaaagaaaG
CATAATTGAGCTGAGACATTAACCTGTGCAGTATGCTCTATTGGGTTTCT
ATTTTTCTGGTTGTATTAACTCTTTTGTCATAATTTATAGATAAGTTCTT
TACTTTCTTCTGGCTACATGAATTTACAGGCTataaatgataatgaaatc
CACGATGTCGTTCTGTCATATCTCATACATAACTGCTACAATGAATCAGT
GGAGTCATTCATTGCTTGCACGGGGATGAAACAGCCGACAGATTATTTGG
AGAACatggagaaaagaaaaagtaggCTTCTTGTTATCGATATTTCACTG
TAAAAGGTTAATTCATGACTATCGGTTGCTTGCTAAGCATACTTTATTTG
CTTGGGAAGCTTAGTGTCCATTAACTGTTCATTAATAACTACTCTTGGAA
AATTTTGCATCATTTACAAATACACATTAGACTACTCTACCACTGAAGGT
GGATGCTAATTCATTACTTGCCTAATACCACTTGAAACATGTGCAGTCTT
TTGAAATAGCAGCTTACTATTTGTCTTGAATAAATCGAATTATGATCATT
TTTATTGCAGttcatttttatcatgttaATATATCAAGTGGcctttttct
atataaaaatgatatttctcTTGATGGTTTTATATTTGTTTCGGTCATCC
CCTATGcaacaatcaagcctttatCTCACTGGTTGGGGTTGGCTACATGG
ATTGAATAACGCCATAATGCTCTTTCATAAATCATGTTCGTTGACAAAGC
ATTGAttactaaatctttcttaaccATTGCACTTATGGTTTTTATTTGTA
TGGGAGTACAAGTGTTCTGGGAAATGCACCGTACTTCtttgaagttattt
ttttattggagcCTATTATAGATAGTAAAGATCTGCTTGATGCTAAATTT
CATTTGTCTTTAGGAATCTTTCATTGTGCACTAGAGGGCAATGCACTTAA
GGCTATTGAGCTTACTGAGAAGCTAGCACCGGATATTCTAAACAAAAATA
AGGATTTAGAGTTTGATCTTCTTAGCCTTCATTTTGTTGAGCTTGCACGC
TGTAAGAAATGGTGAGCAGAGATTAATTTTGTCTTCAAGATAACATGCTC
TAAACTTCCTTCTTTCTTAGAATTTCATTCCATTGGCAGCACGGAAGCTT
TGGAATTTGCTCAGACCAAGTTGAGCCCTTTTGGAAAGGAGCAAAAATAT
ATGGAAAAGCTTCAAGTAAGTTTACATGTTGCAAAACATTTTTGTGATGG
ACTGATGTGAGTTTGCATGCACTTATGATTGGATAAATATTAAGTTGCCA
AAATTGCAGGACTTTATGGCCCTTCTTGCTTATAAGGAGCCAGAGAAATC
CCCAGTGTTTCATCTACTTAGCTCAGAGTTTAGGCAACAGGTTACAGATA
GTTTAAATCGAGCAATTCTTGGTTGGTTAACTTGAATTctaagtattttt
ttgtttaatatagtTCATCGCAAATATATTTGCTTTTGTTTACCTGTGTT
AagtatttccttttctttttcgtGTATGGTGGTCATTTTCAGCACACTTG
AACCTTCCCAGCTATGCGGCAATGGAAAGGCTAATACAGCAGGCTACAGT
TGTCAGACAATGCTTGACTCAGGAGCCTGGCAAGGTAATGGGCATAGCTT
ACTTAATTTAAGAATTGAAACATTTTTGTCCAACAAACCTTTGGATCGTT
CGTCTCTTTCTGGGTGAGATCACTTAGCATTTGCCCCGCGAAAGGTGTTA
TAACTGCTATATTATGCAGAGTACCTCTCTGTTCAAGCTAAATCTTTCAT
TTACTCTTTGCAGGATGGGCCTCCACCATTTTCCTTGAAGGATTTTATCA
GAAGTTGATGGGAAACAATCGAATTTCCACGGGCAATTGGGGAATGAAGC
ATGTTTAA back to topCoding sequence (CDS) from alignment at Chr_LG14-CM007374.1:15777188..15779645+ >rna-TanjilR_12367_La_Tanjil_v1.0 ID=rna-TanjilR_12367_La_Tanjil_v1.0; Name=rna-TanjilR_12367; organism=Lupinus angustifolius; type=CDS; length=741bp; location=Sequence derived from: Chr_LG14-CM007374.1:15777188..15779645+ (Lupinus angustifolius ATGGACCCCGATCCTCGTCAATACGAAAACATCATAAGTTCTTTACTTTC TTCTGGCTACATGAATTTACAGGCTataaatgataatgaaatcCACGATG TCGTTCTGTCATATCTCATACATAACTGCTACAATGAATCAGTGGAGTCA TTCATTGCTTGCACGGGGATGAAACAGCCGACAGATTATTTGGAGAACat ggagaaaagaaaaaGAATCTTTCATTGTGCACTAGAGGGCAATGCACTTA AGGCTATTGAGCTTACTGAGAAGCTAGCACCGGATATTCTAAACAAAAAT AAGGATTTAGAGTTTGATCTTCTTAGCCTTCATTTTGTTGAGCTTGCACG CTGTAAGAAATGCACGGAAGCTTTGGAATTTGCTCAGACCAAGTTGAGCC CTTTTGGAAAGGAGCAAAAATATATGGAAAAGCTTCAAGACTTTATGGCC CTTCTTGCTTATAAGGAGCCAGAGAAATCCCCAGTGTTTCATCTACTTAG CTCAGAGTTTAGGCAACAGGTTACAGATAGTTTAAATCGAGCAATTCTTG GTTGCACACTTGAACCTTCCCAGCTATGCGGCAATGGAAAGGCTAATACA GCAGGCTACAGTTGTCAGACAATGCTTGACTCAGGAGCCTGGCAAGGATG GGCCTCCACCATTTTCCTTGAAGGATTTTATCAGAAGTTGATGGGAAACA ATCGAATTTCCACGGGCAATTGGGGAATGAAGCATGTTTAA back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
|