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Transcript Overview
Name | rna-TanjilR_12356 |
Unique Name | rna-TanjilR_12356_La_Tanjil_v1.0 |
Type | mRNA |
Organism | Lupinus angustifolius (blue lupin) |
Sequence length | 1824 |
Product | hypothetical protein |
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
rna-TanjilR_12356 | rna-TanjilR_12356_La_Tanjil_v1.0-protein | Lupinus angustifolius | polypeptide |
rna-TanjilR_12356_La_Tanjil_v1.0 | rna-TanjilR_12356_La_Tanjil_v1.0 | Lupinus angustifolius | polypeptide |
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
rna-TanjilR_12356_La_Tanjil_v1.0-exon-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15855362..15856505 | rna-TanjilR_12356_La_Tanjil_v1.0-exon-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15855362..15856505 | Lupinus angustifolius | exon |
rna-TanjilR_12356_La_Tanjil_v1.0-exon-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15857166..15857185 | rna-TanjilR_12356_La_Tanjil_v1.0-exon-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15857166..15857185 | Lupinus angustifolius | exon |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
rna-TanjilR_12356_La_Tanjil_v1.0-CDS-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15855362..15856505 | rna-TanjilR_12356_La_Tanjil_v1.0-CDS-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15855362..15856505 | Lupinus angustifolius | CDS |
rna-TanjilR_12356_La_Tanjil_v1.0-CDS-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15857166..15857185 | rna-TanjilR_12356_La_Tanjil_v1.0-CDS-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15857166..15857185 | Lupinus angustifolius | CDS |
Homology
BLAST of rna-TanjilR_12356 vs. DB:Swiss
Match: IQD32_ARATH (Protein IQ-DOMAIN 32 OS=Arabidopsis thaliana OX=3702 GN=IQD32 PE=1 SV=3) HSP 1 Score: 174.481 bits (441), Expect = 6.082e-45 Identity = 140/366 (38.25%), Postives = 201/366 (54.92%), Query Frame = 1
Query: 61 RKLSNPAFIAAQSKFEELSSKANSGRTNSLSNQDATVESEADISSVSTDTAYRSKELPFENLAPHVSQVVDSECGTELSISSTLDSPDISETGAVENERDAKNLVQRIGN--LENTTNLDVEANIPHVIPASSSAKSVLDQTQIVDGTIGNMVQSVVAVDSEERGIRAEKNAPALP-------REQVESAQQDFRPSPEEASPRSHMTVPESQGTPSSQVS--IKLKEGKINKTGSSKKRGTQSVGNKSPANANNDSGSRGSREKLPKDQLSSKRRSSFGSVKPDNVDQEPSDNISNNNPLPRFMQVTESARAKINANTSPRSSPDVHDED-IQLKKRHSLPGPT-GRQVSPRIQRSMSQAQQSAK 1119
RK+SNP+FIAAQSKFEEL+S S + +LS++D + E S DT K+ E++ P +++ SECGTELS++S+LD+ +E + DA+ R+ LE+ T +A + + V D T + GT+ + + V +E I A + P + R + ES Q + S +P MT+ ESQ TP+SQ S +K ++GK K+GSS+KR V K ++ + G+ + E+ + S RR+SFG DQE ++ N LPRFMQ T+SA+AK+ + SPRSSPD+ + D + KKRHSLPG T G+QVSPRIQRS SQAQQ K
Sbjct: 456 RKVSNPSFIAAQSKFEELTSSTGSNKAMTLSSKDDVLGEEGKTDIDSPDTTNTIKDHSLEDVTP--AELSGSECGTELSVTSSLDT--------LEKKSDAEGAEPRVEAKLLEDDTFKTDQAELIEI--------DVKDATSM--GTVEDPKEKVENA-KDEVEISATHHEPVISTPDSKKRRAEDESGPQAYALSEGALTP---MTITESQATPASQASSSVKARKGKSEKSGSSQKR---KVSKKITSSPKQEIGTGEATEQEEGKEQKSGRRTSFG------YDQEARESSGGKNSLPRFMQPTQSAKAKVQEHNSPRSSPDLQERDVVSAKKRHSLPGVTNGKQVSPRIQRSASQAQQGTK 788
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | COILS | Coil | Coil | coord: 114..134 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 39..64 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 245..269 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..23 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..17 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 355..376 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 282..332 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 217..236 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 186..387 |
IPR025064 | Domain of unknown function DUF4005 | PFAM | PF13178 | DUF4005 | coord: 300..370 e-value: 9.3E-8 score: 32.6 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_12356_La_Tanjil_v1.0 ID=rna-TanjilR_12356_La_Tanjil_v1.0; Name=rna-TanjilR_12356; organism=Lupinus angustifolius; type=mRNA; length=1824bp ATGAAAAGATTTGCCTCGGATCAACTAGAAGCTGAGGGAAAGAAATCTGT AAATGGCTCAAGAAAGCTCAGTAATCCTGCATTTATTGCTGCACAGTCAA AATTTGAAGAACTTAGTTCAAAGGCAAATTCGGGTAGGACAAACAGTCTG TCCAATCAAGATGCAACTGTTGAATCAGAAGCAGATATCTCTTCTGTCAG CACAGACACTGCATATAGATCAAAAGAATTGCCATTCGAGAACCTTGCTC CCCATGTTTCACAGGTTGTGGACTCTGAATGTGGTACTGAGCTGTCGATT TCTTCCACTCTGGATTCTCCTGACATATCAGAGACTGGGGCTGTGGAAAA TGAGCGAGATGCCAAAAATTTAGTACAACGGATTGGTAATCTTGAGAACA CAACAAATCTTGATGTTGAGGCTAATATTCCACATGTCATTCCTGCTTCA AGTTCAGCTAAATCTGTTTTGGATCAGACACAGATTGTTGATGGCACTAT TGGCAATATGGTTCAGTCAGTGGTAGCTGTGGACTCTGAAGAGCGTGGTA TTAGGGCTGAGAAAAATGCACCTGCCCTGCCTAGAGAGCAGGTAGAGTCT GCTCAGCAAGATTTCAGACCATCTCCAGAAGAAGCTTCACCTAGAAGCCA TATGACTGTCCCTGAATCACAAGGAACACCTTCGAGTCAGGTATCTATCA AACTTAAAGAGGGCAAAATCAATAAGACCGGATCAAGCAAGAAACGTGGG ACCCAGTCAGTGGGTAACAAATCCCCTGCAAATGCAAATAATGATTCAGG CTCAAGAGGTAGTAGGGAGAAGCTGCCTAAAGATCAGCTGAGTAGCAAGA GACGCAGTTCCTTTGGCTCAGTAAAACCTGATAATGTTGATCAAGAACCA AGTGATAATATTAGTAACAACAATCCACTTCCTCGTTTCATGCAAGTTAC AGAGTCTGCTAGGGCAAAGATCAATGCAAATACCTCTCCAAGATCAAGTC CTGATGTGCATGATGAAGACATCCAACTTAAGAAAAGACATTCCTTACCT GGTCCCACTGGTAGGCAGGTTTCTCCGCGCATCCAACGATCAATGTCTCA AGCGCAGCAGAGTGCAAAAGCGAATGGTGTCCATCCTCCACAAGGTAATT TCTAAATTACAATGCATCTTATACACTTGTAATTCTGTATCTGTGTGGGT GGGTTGTTGATAGTAAACTTGTGAATAATTGGCAGATCCTCATCACAGTT TAGGtctttgttattatatttgtattgaCATAATGGTAATGTCCACTTAG AAGTTTTTTGTGACGCGAGACTTGAGAGGAGCCCAGCTATTGATCAAGGC TCTGTGGTTCACGGGAATCCTAAAATGACATGTTTACAAATCATGTCAGG AATTTGGTTAGCCATTAAGTTAATATACTACTCAAATTTGATTTGAGAAG GTGAGCCTTGGTGCATAGTAAGTATTATTGCCTTGTGAGTTGTAGGTAAC AGACTCAAATCTTGAAGATAGTCTCTCCACTAATATTAGTAAGGTTGCAT ATATGATATGTGTATCCTCTCAGACCCCACCAGCTTAGGCTGATAGTTTC TACCGGCGTATTTCAGTGAAATGACCTTGTcgttaaaaatatcattttaa caAAGTGGAAACAATGTTTGAAATTGTGACCTCCATGTCACCTAGGAACA ACCTTAACTGCTGTGTTAAGGCTCCACTTCAGCGATGAATTAGATAAAAT TTTAGTTCTGTTTTGAGTTTTATTTCTTACCTTTCTGCTTTCTCTGTCTT TCAGAGAGAAAATGGTTGAGGTGA back to topprotein sequence of rna-TanjilR_12356_La_Tanjil_v1.0 >rna-TanjilR_12356_La_Tanjil_v1.0 ID=rna-TanjilR_12356_La_Tanjil_v1.0; Name=rna-TanjilR_12356_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=387bp MKRFASDQLEAEGKKSVNGSRKLSNPAFIAAQSKFEELSSKANSGRTNSL SNQDATVESEADISSVSTDTAYRSKELPFENLAPHVSQVVDSECGTELSI SSTLDSPDISETGAVENERDAKNLVQRIGNLENTTNLDVEANIPHVIPAS SSAKSVLDQTQIVDGTIGNMVQSVVAVDSEERGIRAEKNAPALPREQVES AQQDFRPSPEEASPRSHMTVPESQGTPSSQVSIKLKEGKINKTGSSKKRG TQSVGNKSPANANNDSGSRGSREKLPKDQLSSKRRSSFGSVKPDNVDQEP SDNISNNNPLPRFMQVTESARAKINANTSPRSSPDVHDEDIQLKKRHSLP GPTGRQVSPRIQRSMSQAQQSAKANGVHPPQERKWLR back to topmRNA from alignment at Chr_LG14-CM007374.1:15855362..15857185+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna-TanjilR_12356_La_Tanjil_v1.0 ID=rna-TanjilR_12356_La_Tanjil_v1.0; Name=rna-TanjilR_12356; organism=Lupinus angustifolius; type=mRNA; length=1824bp; location=Sequence derived from: Chr_LG14-CM007374.1:15855362..15857185+ (Lupinus angustifolius ATGAAAAGATTTGCCTCGGATCAACTAGAAGCTGAGGGAAAGAAATCTGT
AAATGGCTCAAGAAAGCTCAGTAATCCTGCATTTATTGCTGCACAGTCAA
AATTTGAAGAACTTAGTTCAAAGGCAAATTCGGGTAGGACAAACAGTCTG
TCCAATCAAGATGCAACTGTTGAATCAGAAGCAGATATCTCTTCTGTCAG
CACAGACACTGCATATAGATCAAAAGAATTGCCATTCGAGAACCTTGCTC
CCCATGTTTCACAGGTTGTGGACTCTGAATGTGGTACTGAGCTGTCGATT
TCTTCCACTCTGGATTCTCCTGACATATCAGAGACTGGGGCTGTGGAAAA
TGAGCGAGATGCCAAAAATTTAGTACAACGGATTGGTAATCTTGAGAACA
CAACAAATCTTGATGTTGAGGCTAATATTCCACATGTCATTCCTGCTTCA
AGTTCAGCTAAATCTGTTTTGGATCAGACACAGATTGTTGATGGCACTAT
TGGCAATATGGTTCAGTCAGTGGTAGCTGTGGACTCTGAAGAGCGTGGTA
TTAGGGCTGAGAAAAATGCACCTGCCCTGCCTAGAGAGCAGGTAGAGTCT
GCTCAGCAAGATTTCAGACCATCTCCAGAAGAAGCTTCACCTAGAAGCCA
TATGACTGTCCCTGAATCACAAGGAACACCTTCGAGTCAGGTATCTATCA
AACTTAAAGAGGGCAAAATCAATAAGACCGGATCAAGCAAGAAACGTGGG
ACCCAGTCAGTGGGTAACAAATCCCCTGCAAATGCAAATAATGATTCAGG
CTCAAGAGGTAGTAGGGAGAAGCTGCCTAAAGATCAGCTGAGTAGCAAGA
GACGCAGTTCCTTTGGCTCAGTAAAACCTGATAATGTTGATCAAGAACCA
AGTGATAATATTAGTAACAACAATCCACTTCCTCGTTTCATGCAAGTTAC
AGAGTCTGCTAGGGCAAAGATCAATGCAAATACCTCTCCAAGATCAAGTC
CTGATGTGCATGATGAAGACATCCAACTTAAGAAAAGACATTCCTTACCT
GGTCCCACTGGTAGGCAGGTTTCTCCGCGCATCCAACGATCAATGTCTCA
AGCGCAGCAGAGTGCAAAAGCGAATGGTGTCCATCCTCCACAAGGTAATT
TCTAAATTACAATGCATCTTATACACTTGTAATTCTGTATCTGTGTGGGT
GGGTTGTTGATAGTAAACTTGTGAATAATTGGCAGATCCTCATCACAGTT
TAGGtctttgttattatatttgtattgaCATAATGGTAATGTCCACTTAG
AAGTTTTTTGTGACGCGAGACTTGAGAGGAGCCCAGCTATTGATCAAGGC
TCTGTGGTTCACGGGAATCCTAAAATGACATGTTTACAAATCATGTCAGG
AATTTGGTTAGCCATTAAGTTAATATACTACTCAAATTTGATTTGAGAAG
GTGAGCCTTGGTGCATAGTAAGTATTATTGCCTTGTGAGTTGTAGGTAAC
AGACTCAAATCTTGAAGATAGTCTCTCCACTAATATTAGTAAGGTTGCAT
ATATGATATGTGTATCCTCTCAGACCCCACCAGCTTAGGCTGATAGTTTC
TACCGGCGTATTTCAGTGAAATGACCTTGTcgttaaaaatatcattttaa
caAAGTGGAAACAATGTTTGAAATTGTGACCTCCATGTCACCTAGGAACA
ACCTTAACTGCTGTGTTAAGGCTCCACTTCAGCGATGAATTAGATAAAAT
TTTAGTTCTGTTTTGAGTTTTATTTCTTACCTTTCTGCTTTCTCTGTCTT
TCAGAGAGAAAATGGTTGAGGTGA back to topCoding sequence (CDS) from alignment at Chr_LG14-CM007374.1:15855362..15857185+ >rna-TanjilR_12356_La_Tanjil_v1.0 ID=rna-TanjilR_12356_La_Tanjil_v1.0; Name=rna-TanjilR_12356; organism=Lupinus angustifolius; type=CDS; length=1164bp; location=Sequence derived from: Chr_LG14-CM007374.1:15855362..15857185+ (Lupinus angustifolius ATGAAAAGATTTGCCTCGGATCAACTAGAAGCTGAGGGAAAGAAATCTGT AAATGGCTCAAGAAAGCTCAGTAATCCTGCATTTATTGCTGCACAGTCAA AATTTGAAGAACTTAGTTCAAAGGCAAATTCGGGTAGGACAAACAGTCTG TCCAATCAAGATGCAACTGTTGAATCAGAAGCAGATATCTCTTCTGTCAG CACAGACACTGCATATAGATCAAAAGAATTGCCATTCGAGAACCTTGCTC CCCATGTTTCACAGGTTGTGGACTCTGAATGTGGTACTGAGCTGTCGATT TCTTCCACTCTGGATTCTCCTGACATATCAGAGACTGGGGCTGTGGAAAA TGAGCGAGATGCCAAAAATTTAGTACAACGGATTGGTAATCTTGAGAACA CAACAAATCTTGATGTTGAGGCTAATATTCCACATGTCATTCCTGCTTCA AGTTCAGCTAAATCTGTTTTGGATCAGACACAGATTGTTGATGGCACTAT TGGCAATATGGTTCAGTCAGTGGTAGCTGTGGACTCTGAAGAGCGTGGTA TTAGGGCTGAGAAAAATGCACCTGCCCTGCCTAGAGAGCAGGTAGAGTCT GCTCAGCAAGATTTCAGACCATCTCCAGAAGAAGCTTCACCTAGAAGCCA TATGACTGTCCCTGAATCACAAGGAACACCTTCGAGTCAGGTATCTATCA AACTTAAAGAGGGCAAAATCAATAAGACCGGATCAAGCAAGAAACGTGGG ACCCAGTCAGTGGGTAACAAATCCCCTGCAAATGCAAATAATGATTCAGG CTCAAGAGGTAGTAGGGAGAAGCTGCCTAAAGATCAGCTGAGTAGCAAGA GACGCAGTTCCTTTGGCTCAGTAAAACCTGATAATGTTGATCAAGAACCA AGTGATAATATTAGTAACAACAATCCACTTCCTCGTTTCATGCAAGTTAC AGAGTCTGCTAGGGCAAAGATCAATGCAAATACCTCTCCAAGATCAAGTC CTGATGTGCATGATGAAGACATCCAACTTAAGAAAAGACATTCCTTACCT GGTCCCACTGGTAGGCAGGTTTCTCCGCGCATCCAACGATCAATGTCTCA AGCGCAGCAGAGTGCAAAAGCGAATGGTGTCCATCCTCCACAAGAGAGAA AATGGTTGAGGTGA back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: INTERPRO
Term | Definition |
IPR025064 | DUF4005 |
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