rna-TanjilR_12341

Transcript Overview
Namerna-TanjilR_12341
Unique Namerna-TanjilR_12341_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length1378
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG14-CM007374.1supercontigChr_LG14-CM007374.1:15943301..15944678 -Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananR262Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR270Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaR0327Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR0339Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
anccR0429Cajanus cajan Asha genome v1.0Cajanus cajan
anpsR0297Pisum sativum Cameor genome v1aPisum sativum
anpsR0304Pisum sativum Cameor genome v1aPisum sativum
anpvR0361Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR0383Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anvuR0318Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR0321Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anasR0363Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR0396Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anzwsR0334Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anzwsR0342Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
antifR0321Vicia faba cv. Tiffany genome v1.0Vicia faba
antifR0340Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR0321Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
anvfhR0340Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
anvrvR0314Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvrvR0336Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvuaR0292Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvssR0359Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvuaR0305Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvssR0384Vicia sativa cv. Studenica genome v1.0Vicia sativa
ancanR0288Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR0301Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
anavjR0349Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0366Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
ancarR0328Cicer arietinum
ancarR0332Cicer arietinum
anccaR0297Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR0307Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR0366Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR0375Vigna umbellata FF25 genome v1.0Vigna umbellata
anvvaR0334Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvvaR0350Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvvaR0360Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvasR0368Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvasR0380Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anpvfR0365Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anvunR0302Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anvunR0307Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anpvfR0393Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris

Orthologs
Gene/TranscriptAssemblySpecies
Cc_v2.0_11006.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Vigan.03G293100.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Vum_03G02077.1Vigna umbellata FF25 genome v1.0Vigna umbellata
XM_058869413.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
rna-XM_004499234.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
evm.model.Chr08.666.1.6211316eVigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vfaba.Tiffany.R1.3g193760.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Vigun08g004700.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Vfaba.Hedin2.R1.3g238640.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Psat06G0006300-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
jg35034.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Phvul.001G004700.2Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
LR48_mrnaVigan07g277400Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Va07G071380.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
rna-XM_014649563.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vigun08g004700.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
PvulFLAVERTChr01.48Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Ca_23022Cicer arietinum CDC Frontier genome v1.0Cicer arietinum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-TanjilR_09734Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_12341gene-TanjilG_12341_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_12341rna-TanjilR_12341_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_12341_La_Tanjil_v1.0rna-TanjilR_12341_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_12341_La_Tanjil_v1.0-CDS-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15944607..15944678rna-TanjilR_12341_La_Tanjil_v1.0-CDS-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15944607..15944678Lupinus angustifoliusCDS
rna-TanjilR_12341_La_Tanjil_v1.0-CDS-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15943877..15944192rna-TanjilR_12341_La_Tanjil_v1.0-CDS-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15943877..15944192Lupinus angustifoliusCDS
rna-TanjilR_12341_La_Tanjil_v1.0-CDS-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15943301..15943788rna-TanjilR_12341_La_Tanjil_v1.0-CDS-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15943301..15943788Lupinus angustifoliusCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_12341_La_Tanjil_v1.0-exon-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15944607..15944678rna-TanjilR_12341_La_Tanjil_v1.0-exon-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15944607..15944678Lupinus angustifoliusexon
rna-TanjilR_12341_La_Tanjil_v1.0-exon-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15943877..15944192rna-TanjilR_12341_La_Tanjil_v1.0-exon-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15943877..15944192Lupinus angustifoliusexon
rna-TanjilR_12341_La_Tanjil_v1.0-exon-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15943301..15943788rna-TanjilR_12341_La_Tanjil_v1.0-exon-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15943301..15943788Lupinus angustifoliusexon


Homology
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_12341 vs.
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 22..57
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 96..129
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 96..132
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..70
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..70

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_12341_La_Tanjil_v1.0 ID=rna-TanjilR_12341_La_Tanjil_v1.0; Name=rna-TanjilR_12341; organism=Lupinus angustifolius; type=mRNA; length=1378bp
ATGTCTCGGTGCTTCCCTTTCCCGCCTCCGGGGTATACGAGGAATAGCGA
TGCCTTGATCGAATCGATTAAGGTTCGTTCGTTTGAACGGTTTCGTTTTT
CGATTTGTGCTCAATTGCATATTTTGATTGATATTTGTAATTAATATCAA
ATCATATAATTCAATATCTGGGGTCGGGTTTTATGTATACTTTAATCGTA
GTTGTTACTATGCTACGATGATCAATTTTTTGTGTGACATTGATAAACTG
ATAAGTAGAGTTTTAATTAAATAATAATATTATTATCTTAGTGATGAAGA
AAACCAATACTTAAGTGTCAACTAATAATATAAATATTTTTTATATTTTT
TACCAATACTTCAAATTTTCAATTTACTGAAATAGATGTGAATGCATGAA
ATATTATTTGGTCTGATCACATTGTTGTATAGCTTTTTTGCTTTATCGGT
CCTCGATATTGAGAATGTTAGTTTGGTGATGTAAAGCTCCGAAACGAGGT
TAAGAAGGCCAAGAAAGATAGGAAGAAAGAGAAAAGGAGGGAGAAGAAGG
ACAAAGAGTCAAAGAAAGAGAAAAAGAAAGATAGGAAAGGTAAGGAAGGT
AAAGAGTCCAAGCTCATTGAACTGGAGAAGAAAATTGGTTATGTGCAAAA
GGGAGCTTACAATGAGTTTGAACAACTGGAGAAGAGCGATATTACAGTGG
AACATAGCCAACCAGTTACTACACCTGATCCATGTTGTTCCGACAGTACA
CAGAGCAGTAACAAGAGGAAATGTAGCACTTCCCCATCTATGCATAATCA
TGGTGAGTGTTGAGTAACATGACATAATACTATTTGTTTTGTTGTACTTG
TCCACAGCACTTATGTTTAAAACCTTTTGTGTTGAAACAGGGACTGTCAA
GAAAGTCCGATTTTCACTGAGAAAACATGCAGAACCTGGAGAATCTAAAT
TAGATGATCAATTGGTGTCCACTTCTAGAAGCATAGGAACTTATGGAGGT
GATGATCTATTGCCACAGGTCGACCGGGATCAATGTCCAGGAAATTGTGA
GCCAAAACATTATAACGAGTTAAAGAGTTTACCAGTTGGTGCTGCCCTGA
ACACAAATTTACTTGATGATGAAGGAATGAGAATGGTATCAAAATACAAC
TCTCTATTTCAGAATTGGGTACCCCTTCCCCCAGCTTGTGATGGATTCAG
GTCAGAAGAGGATCTGGACTGGCTATTTAGCTCTAAACAGCAAAAGGAAA
GACCTGTGTCTAAGTCAGTAAAAGCTGTTACTAGTGCCTTGAACTGTTCA
AGCACATCTCTATGGCCCCGTGCTCAGTACTTACCGGAGGTTGAATTATA
TGCGTTGCCATATGCCATTCCATTTTGA
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protein sequence of rna-TanjilR_12341_La_Tanjil_v1.0

>rna-TanjilR_12341_La_Tanjil_v1.0 ID=rna-TanjilR_12341_La_Tanjil_v1.0; Name=rna-TanjilR_12341_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=291bp
MSRCFPFPPPGYTRNSDALIESIKLRNEVKKAKKDRKKEKRREKKDKESK
KEKKKDRKGKEGKESKLIELEKKIGYVQKGAYNEFEQLEKSDITVEHSQP
VTTPDPCCSDSTQSSNKRKCSTSPSMHNHGTVKKVRFSLRKHAEPGESKL
DDQLVSTSRSIGTYGGDDLLPQVDRDQCPGNCEPKHYNELKSLPVGAALN
TNLLDDEGMRMVSKYNSLFQNWVPLPPACDGFRSEEDLDWLFSSKQQKER
PVSKSVKAVTSALNCSSTSLWPRAQYLPEVELYALPYAIPF
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mRNA from alignment at Chr_LG14-CM007374.1:15943301..15944678-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_12341_La_Tanjil_v1.0 ID=rna-TanjilR_12341_La_Tanjil_v1.0; Name=rna-TanjilR_12341; organism=Lupinus angustifolius; type=mRNA; length=1378bp; location=Sequence derived from: Chr_LG14-CM007374.1:15943301..15944678- (Lupinus angustifolius
ATGTCTCGGTGCTTCCCTTTCCCGCCTCCGGGGTATACGAGGAATAGCGA
TGCCTTGATCGAATCGATTAAGGTTCGTTCGTTTGAACGGTTTCGTTTTT
CGATTTGTGCTCAATTGCATATTTTGATTGATATTTGTAATTAATATCAA
ATCATATAATTCAATATCTGGGGTCGGGTTTTATGTATACTTTAATCGTA
GTTGTTACTATGCTACGATGATCAATTTTTTGTGTGACATTGATAAACTG
ATAAGTAGAGTTTTAATTAAATAATAATATTATTATCTTAGTGATGAAGA
AAACCAATACTTAAGTGTCAACTAATAATATAAATATTTTTTATATTTTT
TACCAATACTTCAAATTTTCAATTTACTGAAATAGATGTGAATGCATGAA
ATATTATTTGGTCTGATCACATTGTTGTATAGCTTTTTTGCTTTATCGGT
CCTCGATATTGAGAATGTTAGTTTGGTGATGTAAAGCTCCGAAACGAGGT
TAAGAAGGCCAAGAAAGATAGGAAGAAAGAGAAAAGGAGGGAGAAGAAGG
ACAAAGAGTCAAAGAAAGAGAAAAAGAAAGATAGGAAAGGTAAGGAAGGT
AAAGAGTCCAAGCTCATTGAACTGGAGAAGAAAATTGGTTATGTGCAAAA
GGGAGCTTACAATGAGTTTGAACAACTGGAGAAGAGCGATATTACAGTGG
AACATAGCCAACCAGTTACTACACCTGATCCATGTTGTTCCGACAGTACA
CAGAGCAGTAACAAGAGGAAATGTAGCACTTCCCCATCTATGCATAATCA
TGGTGAGTGTTGAGTAACATGACATAATACTATTTGTTTTGTTGTACTTG
TCCACAGCACTTATGTTTAAAACCTTTTGTGTTGAAACAGGGACTGTCAA
GAAAGTCCGATTTTCACTGAGAAAACATGCAGAACCTGGAGAATCTAAAT
TAGATGATCAATTGGTGTCCACTTCTAGAAGCATAGGAACTTATGGAGGT
GATGATCTATTGCCACAGGTCGACCGGGATCAATGTCCAGGAAATTGTGA
GCCAAAACATTATAACGAGTTAAAGAGTTTACCAGTTGGTGCTGCCCTGA
ACACAAATTTACTTGATGATGAAGGAATGAGAATGGTATCAAAATACAAC
TCTCTATTTCAGAATTGGGTACCCCTTCCCCCAGCTTGTGATGGATTCAG
GTCAGAAGAGGATCTGGACTGGCTATTTAGCTCTAAACAGCAAAAGGAAA
GACCTGTGTCTAAGTCAGTAAAAGCTGTTACTAGTGCCTTGAACTGTTCA
AGCACATCTCTATGGCCCCGTGCTCAGTACTTACCGGAGGTTGAATTATA
TGCGTTGCCATATGCCATTCCATTTTGA
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Coding sequence (CDS) from alignment at Chr_LG14-CM007374.1:15943301..15944678-

>rna-TanjilR_12341_La_Tanjil_v1.0 ID=rna-TanjilR_12341_La_Tanjil_v1.0; Name=rna-TanjilR_12341; organism=Lupinus angustifolius; type=CDS; length=876bp; location=Sequence derived from: Chr_LG14-CM007374.1:15943301..15944678- (Lupinus angustifolius
ATGTCTCGGTGCTTCCCTTTCCCGCCTCCGGGGTATACGAGGAATAGCGA
TGCCTTGATCGAATCGATTAAGCTCCGAAACGAGGTTAAGAAGGCCAAGA
AAGATAGGAAGAAAGAGAAAAGGAGGGAGAAGAAGGACAAAGAGTCAAAG
AAAGAGAAAAAGAAAGATAGGAAAGGTAAGGAAGGTAAAGAGTCCAAGCT
CATTGAACTGGAGAAGAAAATTGGTTATGTGCAAAAGGGAGCTTACAATG
AGTTTGAACAACTGGAGAAGAGCGATATTACAGTGGAACATAGCCAACCA
GTTACTACACCTGATCCATGTTGTTCCGACAGTACACAGAGCAGTAACAA
GAGGAAATGTAGCACTTCCCCATCTATGCATAATCATGGGACTGTCAAGA
AAGTCCGATTTTCACTGAGAAAACATGCAGAACCTGGAGAATCTAAATTA
GATGATCAATTGGTGTCCACTTCTAGAAGCATAGGAACTTATGGAGGTGA
TGATCTATTGCCACAGGTCGACCGGGATCAATGTCCAGGAAATTGTGAGC
CAAAACATTATAACGAGTTAAAGAGTTTACCAGTTGGTGCTGCCCTGAAC
ACAAATTTACTTGATGATGAAGGAATGAGAATGGTATCAAAATACAACTC
TCTATTTCAGAATTGGGTACCCCTTCCCCCAGCTTGTGATGGATTCAGGT
CAGAAGAGGATCTGGACTGGCTATTTAGCTCTAAACAGCAAAAGGAAAGA
CCTGTGTCTAAGTCAGTAAAAGCTGTTACTAGTGCCTTGAACTGTTCAAG
CACATCTCTATGGCCCCGTGCTCAGTACTTACCGGAGGTTGAATTATATG
CGTTGCCATATGCCATTCCATTTTGA
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