rna-TanjilR_28899
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_28899 vs. DB:Swiss
Match: C2GR2_ARATH (C2 and GRAM domain-containing protein At5g50170 OS=Arabidopsis thaliana OX=3702 GN=At5g50170 PE=2 SV=1) HSP 1 Score: 360.533 bits (924), Expect = 2.988e-103 Identity = 198/410 (48.29%), Postives = 273/410 (66.59%), Query Frame = 1
Query: 1009 GKILLTISLHGKDHSFINHT--HSPNSTVAFEDSRELE----DQHICSQVPCSKMGEGKQLLKVIANRLEKIFNKKEGRSKAEYS-SELSNSL-SDYEDSVEENPSPCS---FEEAMVLMDSEDN-KTEMPENLQGGIVVDHIYAVSPYDLNVFLFAPNSQFRKDLAALQGTINVQEGPWAWKSGETSCLTRVVSYTKAASKLVKAVNATEDQTYIRVTKEEFAVLVSVNTPEVPLGDTFRIELLYKIMPGG-LSSGETSSHLVVSWGIVFLQSTMMKGMIERGTRQGMNESFDQFSNLLAQNFKVLDKTDLPDKENLLATLQTENQWNWWFAAKYFCNFTVLSTIFMFLYVFAHILRCGPSAHHGLEFKGLELPDSFGELVTTGILIIQLQRVYNMVSHFVQARFQMGK 2199
GKILL++SL GK S + + E +ELE D K +GK ++K I N ++K+F+KKE SK + S + S+ S+YED+ ++ S + FEE + LM S D+ + EMPENL GG++VD Y VSP +LN FLF P+SQFRK+LA LQG +VQEGPW +T LTRVV+Y +AA+K+VKAV ATE+Q Y + + ++FAV VSV+TP+VP G+TF+IELLYKI+P ++G +S L++SWGI F QST+MKGMIE G RQG+ ESF+QFSNLLA+ +K LD + DKE ++AT+Q+E + + A YF + +V+ + + +YV H+L C PS G EF GL+LPDSFGEL ++GIL++ L+RVY M HFVQAR G+
Sbjct: 119 GKILLSLSLQGKWESTSGEKVLNDKQDIINLEGVKELEGSPKDLISSRDGKRRKHHDGKHIMKNIVNHIDKLFHKKEEISKRLHDESSVGQSVNSNYEDATDQCSSSATCTGFEEGLDLMQSSDSEREEMPENLTGGVLVDQKYLVSPCELNKFLFTPSSQFRKELAELQGLSDVQEGPWTMMQEDTPRLTRVVTYMRAATKMVKAVKATENQVYRKASGKQFAVFVSVSTPDVPYGNTFKIELLYKILPETEPTAGGEASRLIISWGIQFSQSTIMKGMIEGGARQGLKESFEQFSNLLAKTYKTLDPAVVLDKEQVIATVQSEPKTDLKSAFLYFWSSSVICAVLLSVYVVVHMLHCEPSKIQGFEFYGLDLPDSFGELFSSGILVLLLERVYIMTVHFVQARLHRGR 528 HSP 2 Score: 140.584 bits (353), Expect = 2.844e-55 Identity = 76/144 (52.78%), Postives = 98/144 (68.06%), Query Frame = 2
Query: 2687 EILEFDAMVEPPSVLGVEVFDFDGPFDQDVSLGYAEINFLKHSSVELADMWVLLEGKLAQSAQSKLHLRIFLDNNKGDEIIKDYLERKEKEVGKKVSIVTLINFHFFVRLIYSTVELCIVSD**CTMAVESSIASKEFYISEIV 3118
E++EFDAM EPPSVL VEVFDFDGPFDQ SLG+AEINFLKH++ ELAD+ V L G AQ++QSKL LRIFL+N G E +KDYL + EKEVGKK++I + F +L E ++ + C + + + K F + IV
Sbjct: 588 EVIEFDAMEEPPSVLDVEVFDFDGPFDQGASLGHAEINFLKHTADELADLSVALVGNHAQASQSKLQLRIFLENKNGVETMKDYLSKVEKEVGKKLNIRSPQKNSAFQKLFGLPHEEFLLKEYTCYLKRKLPVQGKLFLSARIV 731 HSP 3 Score: 100.138 bits (248), Expect = 2.844e-55 Identity = 42/63 (66.67%), Postives = 53/63 (84.13%), Query Frame = 3
Query: 2406 GTDHGLKAHGDGWIVTVALIDGVDLASLESTGLSDPYVIFTCNGQTRSSSVKLQTSDPQWNSL 2594
G D G+KA+G GWI+T+ALI G +LAS+E+T L DPYV+FTCNG+TR+SSVKLQ DPQWN +
Sbjct: 527 GRDQGVKANGKGWILTIALIKGTNLASVEATELFDPYVVFTCNGKTRTSSVKLQAQDPQWNEV 589 HSP 4 Score: 149.058 bits (375), Expect = 7.713e-43 Identity = 68/104 (65.38%), Postives = 86/104 (82.69%), Query Frame = 3
Query: 3318 LRNELNKQIKYAFLL*GRLFLSARILGFYANLFGHKTKFFFLWEDIEDIQVLPPSLASVGSPALVIILQRGRGVDARHGAKTQDEEGRLRFHFQSFVSFSAASR 3629
L E +K + G+LFLSARI+ FY+N+FGHKTKF+FLWEDI+DIQVLPP+ AS+GSP L+IIL++ RG+DA+HGAK+QD+EGRL F+FQSFVSF A SR
Sbjct: 706 LLKEYTCYLKRKLPVQGKLFLSARIVAFYSNVFGHKTKFYFLWEDIDDIQVLPPTFASLGSPLLLIILKKNRGLDAKHGAKSQDDEGRLSFYFQSFVSFDATSR 809 HSP 5 Score: 50.0618 bits (118), Expect = 7.713e-43 Identity = 25/57 (43.86%), Postives = 39/57 (68.42%), Query Frame = 1
Query: 3742 RTIRALWRTRTLNLNQKEQFAEENEN-QEGFVIPEDFGSVHD-DEAKMSKIYSEELP 3906
RTI ALW+TRTL+++ + Q EE+++ + F++PE V D D MSK+Y+ +LP
Sbjct: 809 RTIMALWKTRTLSVDHRAQIVEEDQDVADPFLLPEAVTVVSDADALMMSKVYTCDLP 865 HSP 6 Score: 124.405 bits (311), Expect = 4.948e-27 Identity = 52/89 (58.43%), Postives = 67/89 (75.28%), Query Frame = 1
Query: 4510 VMGIFEGGNFEHKIMLRTGCLNYETTAWELVKPGVFERRVNYKFDRHTSAFGGEITCTQQKFPNADTGGWIVNEVIALHAVPFADHFRV 4776
VM IF GG E KIM ++GCL+Y +T WE KPGV+ERR++YK++ + S FGG +TC QQK P + GWI+NE++ALH VPF DHFRV
Sbjct: 871 VMKIFGGGELERKIMEKSGCLSYASTTWESKKPGVYERRLSYKYNHYVSVFGGGVTCAQQKSPAPNDEGWILNEIVALHDVPFGDHFRV 959 HSP 7 Score: 95.9005 bits (237), Expect = 2.406e-18 Identity = 53/135 (39.26%), Postives = 83/135 (61.48%), Query Frame = 1
Query: 4 LKLNVCILEAKDLPINNSYVKLKLGKFKSKTRILRHTCNPVWNEEFVFRVHDKKENVLVISVVNIDDDGYYDDESKVVTNGSVDFVLGEVRIEVAFVASQDKQSLAPTWFSLETTTKNGKFFKKYCGLLFYSITF 408
++L V IL+AKDLP ++ KL +G+ KSKTR+ R T +P+WNEEFVFR+ D E V+ + + D +V+ G ++G+VRI + VA+++ Q+L PTWF +E + +GKF CG + S++
Sbjct: 1 MRLYVYILQAKDLPAKETFAKLHVGRHKSKTRVARDTSSPIWNEEFVFRISDVDEGDDVVVSILHHEQ---QDHQSIVSTG----LIGKVRIPLTSVAAEENQTLLPTWFVIEKPS-DGKFVNIECGKILLSLSL 127 HSP 8 Score: 74.3294 bits (181), Expect = 8.986e-12 Identity = 30/40 (75.00%), Postives = 38/40 (95.00%), Query Frame = 3
Query: 3069 QLNLRSPQRNSTFQKLFGLPPEEFLIKDFTCYLKRKMPLQ 3188
+LN+RSPQ+NS FQKLFGLP EEFL+K++TCYLKRK+P+Q
Sbjct: 682 KLNIRSPQKNSAFQKLFGLPHEEFLLKEYTCYLKRKLPVQ 721 HSP 9 Score: 67.0106 bits (162), Expect = 1.467e-9 Identity = 27/61 (44.26%), Postives = 44/61 (72.13%), Query Frame = 2
Query: 5153 LQIHIKYEIEKSAIGDCACKCDAYIGIMWLKSSKFEQRVNRNIIAKFTLRLKEIFEMVQKE 5335
++HI+YE++K+ + KC+ Y+ I WLK+ KFEQR++++I+ KF R K IF++ QKE
Sbjct: 957 FRVHIRYEVKKAGVDCKTSKCEVYLKIRWLKTIKFEQRISKSIMEKFRNRFKVIFDLFQKE 1017
BLAST of rna-TanjilR_28899 vs. DB:Swiss
Match: C2GR1_ARATH (C2 and GRAM domain-containing protein At1g03370 OS=Arabidopsis thaliana OX=3702 GN=At1g03370 PE=2 SV=4) HSP 1 Score: 327.405 bits (838), Expect = 4.423e-92 Identity = 188/412 (45.63%), Postives = 251/412 (60.92%), Query Frame = 1
Query: 1009 GKILLTISLHGKDHSFINHTHSPNSTVAFEDSRELEDQHICSQVPCSKMGEGKQLLKV----IANRLEKIFNKKEGRSKAEYSSELSNSLSDYEDSV---------EENPSPCSFEEAMVLMDSEDNKTEMPENLQGGIVVDHIYAVSPYDLNVFLFAPNSQFRKDLAALQGTINVQEGPW-AWKSGETSCLTRVVSYTKAASKLVKAVNATEDQTYIRVTKEEFAVLVSVNTPEVPLGDTFRIELLYKIMPGG-LSSGETSSHLVVSWGIVFLQSTMMKGMIERGTRQGMNESFDQFSNLLAQNFKVLDKTDLP-DKENLLATLQTENQWNWWFAAKYFCNFTVLSTIFMFLYVFAHILRCGPSAHHGLEFKGLELPDSFGELVTTGILIIQLQRVYNMVSHFVQARFQMG 2196
G+ILL I K +S ++ T S + T A S +L + C+ + A R +IF K + SS S SD + E+ S SFEE + M+S+D +E P NL GG+VVD ++ +SP DLN+ LFA +S F L LQGT VQ GPW A GE+ + RVVSY KAA+KL+KAV TE+QTY++ E +AVL SV TP+VP G TF++E+LY I PG L SGE S LVVSW + FLQSTMM+GMIE G RQG+ ++F+Q++NLLAQ+ K +D D+ +KE L++LQ E Q +W A +YF NFTVLST + +YVF HI+ PSA GLEF GL+LPDS GE V +G+L++Q +RV ++S F+QAR Q G
Sbjct: 116 GEILLKICFSQK-NSVLDLTSSGDQTSA-SRSPDLRLESPIDPSTCASPSRSDDASSIPQTTFAGRFTQIFQKNAITATPTQSSSRSIDASDLSEISKPVFSLELSEDESSSTSFEELLKAMESKDQGSEPPSNLSGGVVVDQLFMISPSDLNIVLFASDSSFYASLTELQGTTEVQIGPWKAENDGES--VKRVVSYLKAATKLIKAVKGTEEQTYLKADGEVYAVLASVATPDVPFGGTFKVEVLYCISPGPELPSGEQCSRLVVSWRLNFLQSTMMRGMIENGARQGLKDNFEQYANLLAQSVKPVDSKDIGLNKEQALSSLQAEPQSDWKLAVQYFANFTVLSTFLIGIYVFVHIVFAIPSAIQGLEFNGLDLPDSIGEFVVSGVLVLQCERVLQLISRFMQARKQKG 523 HSP 2 Score: 148.673 bits (374), Expect = 1.031e-58 Identity = 72/144 (50.00%), Postives = 102/144 (70.83%), Query Frame = 2
Query: 2687 EILEFDAMVEPPSVLGVEVFDFDGPFDQDVSLGYAEINFLKHSSVELADMWVLLEGKLAQSAQSKLHLRIFLDNNKGDEIIKDYLERKEKEVGKKVSIVTLINFHFFVRLIYSTVELCIVSD**CTMAVESSIASKEFYISEIV 3118
EI EFDAM +PPSVL VEVFDFDGPFD+ VSLG+AE+NF++ + +LAD+WV L+GKLAQ+ QSKLHLRIFLD+ G ++++DYL + EKEVGKK+++ + F +L E +++D C + + + + F + IV
Sbjct: 584 EIFEFDAMADPPSVLNVEVFDFDGPFDEAVSLGHAEVNFVRSNISDLADVWVPLQGKLAQACQSKLHLRIFLDHTGGGDVVRDYLNKMEKEVGKKINVRSPQTNSAFQKLFGLPQEEFLINDFTCHLKRKMPLQGRLFLSARIV 727 HSP 3 Score: 103.605 bits (257), Expect = 1.031e-58 Identity = 40/63 (63.49%), Postives = 56/63 (88.89%), Query Frame = 3
Query: 2406 GTDHGLKAHGDGWIVTVALIDGVDLASLESTGLSDPYVIFTCNGQTRSSSVKLQTSDPQWNSL 2594
G+DHG+KAHGDGW++TVALI+GVDLA+++ +G DPY++FT NG+TR+SS+K Q S+PQWN +
Sbjct: 523 GSDHGIKAHGDGWLLTVALIEGVDLAAVDPSGHCDPYIVFTSNGKTRTSSIKFQKSNPQWNEI 585 HSP 4 Score: 145.976 bits (367), Expect = 9.353e-34 Identity = 69/104 (66.35%), Postives = 85/104 (81.73%), Query Frame = 3
Query: 3318 LRNELNKQIKYAFLL*GRLFLSARILGFYANLFGHKTKFFFLWEDIEDIQVLPPSLASVGSPALVIILQRGRGVDARHGAKTQDEEGRLRFHFQSFVSFSAASR 3629
L N+ +K L GRLFLSARI+GFYA++FG+KTKFFFLWEDIE+IQVLPP+LAS+GSP +V+ L+ RG+DAR GAKT DEEGRL+FHF SFVSF+ A +
Sbjct: 702 LINDFTCHLKRKMPLQGRLFLSARIVGFYASIFGNKTKFFFLWEDIEEIQVLPPTLASMGSPIVVMTLRPNRGLDARIGAKTHDEEGRLKFHFHSFVSFNVAQK 805 HSP 5 Score: 85.1149 bits (209), Expect = 4.651e-15 Identity = 51/143 (35.66%), Postives = 79/143 (55.24%), Query Frame = 1
Query: 4 LKLNVCILEAKDLP------INNSYVKLKLGKFKSKTRILRHTCNPVWNEEFVFRVHDKKENVLVISVVNIDDDGYYDDESKVVTNGSVDFVLGEVRIEVAFVASQDKQSLAPTWFSLETTTKNGKFFKKYCGLLFYSITFGH 414
+KL V ++EA++LP ++ YV+L+LGK +S+T++++ NP W E+F F V D + LV+SV +D+D Y++D DFV G+VR+ V+ V + QSL W+ L K KK CG + I F
Sbjct: 1 MKLQVRVVEARNLPAMDLNGFSDPYVRLQLGKQRSRTKVVKKNLNPKWTEDFSFGVDDLNDE-LVVSV--LDEDKYFND----------DFV-GQVRVSVSLVFDAENQSLGTVWYPLNPKKKGS---KKDCGEILLKICFSQ 126 HSP 6 Score: 80.4925 bits (197), Expect = 1.125e-13 Identity = 37/88 (42.05%), Postives = 52/88 (59.09%), Query Frame = 1
Query: 4513 MGIFEGGNFEHKIMLRTGCLNYETTAWELVKPGVFERRVNYKFDRHTSAFGGEITCTQQKFPNADTGGWIVNEVIALHAVPFADHFRV 4776
M +F GG + K M R GC +Y + WE K V+ER+ Y+ D+ S + GE+T TQQK + GW+V EV+ LH VP D+F +
Sbjct: 865 MELFGGGEVDRKAMERAGCQSYSCSPWESEKDDVYERQTYYR-DKRISRYRGEVTSTQQKSLVPEKNGWLVEEVMTLHGVPLGDYFNL 951 HSP 7 Score: 74.7146 bits (182), Expect = 7.250e-12 Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = 3
Query: 3033 NYVLYLINDAQWQLNLRSPQRNSTFQKLFGLPPEEFLIKDFTCYLKRKMPLQ 3188
+Y+ + + ++N+RSPQ NS FQKLFGLP EEFLI DFTC+LKRKMPLQ
Sbjct: 666 DYLNKMEKEVGKKINVRSPQTNSAFQKLFGLPQEEFLINDFTCHLKRKMPLQ 717 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_28899 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 2
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_28899_La_Tanjil_v1.0 ID=rna-TanjilR_28899_La_Tanjil_v1.0; Name=rna-TanjilR_28899; organism=Lupinus angustifolius; type=mRNA; length=5368bpback to top protein sequence of rna-TanjilR_28899_La_Tanjil_v1.0 >rna-TanjilR_28899_La_Tanjil_v1.0 ID=rna-TanjilR_28899_La_Tanjil_v1.0; Name=rna-TanjilR_28899_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=1033bpback to top mRNA from alignment at Chr_LG15-CM007375.1:4954037..4959404+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_28899_La_Tanjil_v1.0 ID=rna-TanjilR_28899_La_Tanjil_v1.0; Name=rna-TanjilR_28899; organism=Lupinus angustifolius; type=mRNA; length=5368bp; location=Sequence derived from: Chr_LG15-CM007375.1:4954037..4959404+ (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG15-CM007375.1:4954037..4959404+ >rna-TanjilR_28899_La_Tanjil_v1.0 ID=rna-TanjilR_28899_La_Tanjil_v1.0; Name=rna-TanjilR_28899; organism=Lupinus angustifolius; type=CDS; length=3102bp; location=Sequence derived from: Chr_LG15-CM007375.1:4954037..4959404+ (Lupinus angustifoliusback to top |