Homology
BLAST of rna-TanjilR_28920 vs. DB:Swiss
Match:
SEOA_ARATH (Protein SIEVE ELEMENT OCCLUSION A OS=Arabidopsis thaliana OX=3702 GN=SEOA PE=1 SV=1)
HSP 1 Score: 186.808 bits (473), Expect = 3.783e-47
Identity = 94/220 (42.73%), Postives = 135/220 (61.36%), Query Frame = 2
Query: 3539 SLLQMAEGKFICLYGGEDIEWIQTFTTTAMNVAKAGSFELEMVYVGKSNAKERMQKMINTFATRKFSYYWPNVTSIWFFWARLESMLYSKLQ----YG-------RTVENDQIMSEVMTVLSFDGSDQGWAIFCRGAGEMARAKGDTALTSFRDFDKWKDNIERDGLVPALKDYLNQLHTPHHCNRLILPGSTGGIPEKVVCAECGRPMERYFMYRCCVE 4165
SL Q+ +GK+ICLYGGED++WI+ FT+ NVAKA + +LEMVYVGK N K +Q +INT S+ P++ IWFFW R+ESM SK + +G + E D ++ EV+ +L + G GW + + + M RAKG+ +F++W+ NI G + AL D+L PHHC R +LP + G IP +V C EC R ME+Y++Y+CC+E
Sbjct: 603 SLNQLVDGKYICLYGGEDMQWIKNFTSLWRNVAKAANIQLEMVYVGKRNPKNGIQPIINTIREENLSHTLPDLFQIWFFWTRVESMWESKQRMLKAHGIKGREGFKEEEKDLVLQEVVAMLGYGGEGDGWGLVSKASDMMVRAKGNLFSRGLAEFNEWEVNIPTKGFLTALNDHLLMRLPPHHCTRFMLPETAGIIPNEVECTECRRTMEKYYLYQCCLE 822 HSP 2 Score: 130.183 bits (326), Expect = 3.049e-29
Identity = 65/175 (37.14%), Postives = 108/175 (61.71%), Query Frame = 3
Query: 2664 FKPFNYLFD------KQANLEVLRRKNVLLLISDLDLSQEEIMILDNLYKDAQSRGETPYEMVWIPIVDKATWNDVNREKFEYLQSLMAWYSVHDPFIIEPSVTKYIKEVWNFTKKAIVVALDPQGRLSSPNALHMIWIWGNLAFPFTREKEESLWKQELWSLELLVDGIDPMVL 3170
+P ++L+ ++ + VL +K+VLLLISDL+ ++E+ IL++LY +A + +E++W+P+ D W + + KFE L M WY + +P + + ++++E W F + I+VALDP+G++ S NA M+WIW A PFT +E LW ++ W+LE L+DG DP L
Sbjct: 435 LRPIDFLYHGAGVSKRRVGINVLTQKHVLLLISDLENIEKELYILESLYTEAWQQS---FEILWVPVQD--FWTEADDAKFEALHMNMRWYVLGEPRKLRRAAIRFVREWWGFKNRPILVALDPKGQVMSTNAFPMVWIWQPFAHPFTTARERDLWSEQEWNLEFLIDGTDPHSL 604 HSP 3 Score: 105.145 bits (261), Expect = 2.114e-21
Identity = 54/164 (32.93%), Postives = 88/164 (53.66%), Query Frame = 2
Query: 1184 QLSCKCSGGGDAHA-------------STMVLLNYLSNYSWHAKVVLTLAAFAVIFGEFWLVVQMSAENTLAKSVSLLKQLPDIVENSTSLRPQFDALNKLVKVAMDVTICIVEFKELPSQYISEDTPPMSVASTHIPIAAYWVIRSVVACASQIESLIGMRNE 1636
++ CKC GG++H +T +L+ +S Y W AK+VL L+A AV +G F L+ + A N L KS++L+KQLP I +L + D L++ +D+T I++ +LP +I+ + + HIP A YW++R V+ C S I G + +
Sbjct: 210 EIDCKCLHGGESHGMMTSGLHLDSRNTTTFSVLSLVSKYRWDAKLVLVLSALAVKYGVFLLLAETHATNQLTKSLALIKQLPSIFSRQNALHQRLDKTRILMQDMVDLTTTIIDIYQLPPNHIT------AAFTDHIPTAVYWIVRCVLICVSHISGASGFKQD 367
BLAST of rna-TanjilR_28920 vs. DB:Swiss
Match:
SEOB_ARATH (Protein SIEVE ELEMENT OCCLUSION B OS=Arabidopsis thaliana OX=3702 GN=SEOB PE=1 SV=1)
HSP 1 Score: 164.466 bits (415), Expect = 3.061e-40
Identity = 80/177 (45.20%), Postives = 120/177 (67.80%), Query Frame = 3
Query: 2682 LFDKQANLEVLRRKNVLLLISDLDLSQEEIMILDNLYKDAQ-------SRGETPYEMVWIPIVDKAT---WNDVNREKFEYLQSLMAWYSVHDPFIIEPSVTKYIKEVWNFTKKAIVVALDPQGRLSSPNALHMIWIWGNLAFPFTREKEESLWKQELWSLELLVDGIDPMVLEWVR 3182
L ++ +L+VLRRK VLLLISDL++ Q+E+ I + +Y +++ + PYE+VW+P+VD + + ++KFE L+ M WYSV P +IE V ++++ W+F K I+V +DPQG +S NALHMIWIWG AFPFTR +EE LW++E +SL L+VDGID ++ W++
Sbjct: 344 LTKRKVHLDVLRRKTVLLLISDLNILQDELSIFEQIYTESRRNLVGVDGKSHMPYEVVWVPVVDPIEDFERSPILQKKFEDLRDPMPWYSVDSPKLIERHVVEFMRGRWHFMNKPILVVIDPQGNEASLNALHMIWIWGTEAFPFTRSREEELWRRETFSLNLIVDGIDSVIFNWIK 520 HSP 2 Score: 140.198 bits (352), Expect = 1.679e-32
Identity = 69/151 (45.70%), Postives = 99/151 (65.56%), Query Frame = 2
Query: 1184 QLSCKCSGGGDAHASTMVLLNYLSNYSWHAKVVLTLAAFAVIFGEFWLVVQMSAENTLAKSVSLLKQLPDIVENSTSLRPQFDALNKLVKVAMDVTICIVEFKELPSQYISEDTPPMSVASTHIPIAAYWVIRSVVACASQIESLIGMRNE 1636
+++ K G D+H TM + +LS++ W K+VLTLAAFA+ +GEFWL+VQ ++N LAKS+++LK +P V+N +L LN L++ VT C+VE ELP +YI+ D P +S + IPIA YW IRSV+AC SQI + M +E
Sbjct: 116 EIAYKSLTGSDSHEITMSVFEHLSSFQWDGKLVLTLAAFALNYGEFWLLVQFYSKNQLAKSLAMLKLVP--VQNRVTLESVSQGLNDLIREMKSVTACVVELSELPDRYITPDVPQLSRILSTIPIAVYWTIRSVIACISQINMITAMGHE 264 HSP 3 Score: 137.887 bits (346), Expect = 9.057e-32
Identity = 73/205 (35.61%), Postives = 109/205 (53.17%), Query Frame = 2
Query: 3566 FICLYGGEDIEWIQTFTTTAMNVAKAGSFELEMVYVGKSNA--KERMQKMINTFATRKFSYYWPNVTSIWFFWARLESMLYSKLQYGRTVENDQIMSEVMTVLSFDGSDQGWAIFCRGAGEMARAKGDTALTSFRDFDKWKDNIERDGLVPALKDY-----LNQLHTPHHCNRLILPGSTGGIPEKVVCAECGRPMERYFMYRCC 4159
+I LYGG+D++WI+ FT A AK + LEM YVGK N +E+++++ + S+ W +WFFW RLESMLYSK+Q G+ ++D +M + +LS+D GWA+ +G + A G T WK ++ G A+ D+ L + P + +G IPEK+ C EC RPME+Y + CC
Sbjct: 524 YIFLYGGDDLDWIRRFTMAAKATAKDSNVNLEMAYVGKRNHSHREQIRRISEVIRSENLSHSWAEPALMWFFWTRLESMLYSKIQLGKADDHDDVMQGIKKILSYDKLG-GWALLSKGPEIVMIAHGAIERTMSVYDRTWKTHVPTKGYTKAMSDHHHDEVLRETGKPCGHFDFHITARSGRIPEKMNCFECQRPMEKYMSFSCC 727
BLAST of rna-TanjilR_28920 vs. DB:Swiss
Match:
SEOC_ARATH (Protein SIEVE ELEMENT OCCLUSION C OS=Arabidopsis thaliana OX=3702 GN=SEOC PE=4 SV=2)
HSP 1 Score: 101.293 bits (251), Expect = 2.220e-20
Identity = 51/161 (31.68%), Postives = 94/161 (58.39%), Query Frame = 3
Query: 2685 FDKQANLEVLRRKNVLLLISDLDLSQEEIMILDNLYKD-AQSRGETPYEMVWIPIVDKATWNDVNREKFEYLQSLMAWYSVHDPFIIEPSVTKYIKEVWNFT-KKAIVVALDPQGRLSSPNALHMIWIWGNLAFPFTREKEESLWKQELWSLELLVDGIDP 3161
+ +Q ++ ++ K LLL+S + + +L LY + + E YE++W+PI W D +E F++ + + W SV P+++ ++ + K+ W++ +A++V +D GR + NA+ M+ IWG A+PF+ +E+ LWK+ WS+ LL+DGI P
Sbjct: 314 YSRQISITEVQDKVTLLLLSKPPV-EPLFFLLQQLYDHPSNTNTEQNYEIIWVPIPSSQKWTDEEKEIFDFYSNSLPWISVRQPWLMSSTILNFFKQEWHYKDNEAMLVVIDSNGRFVNMNAMDMVLIWGVKAYPFSVSREDELWKEHGWSINLLLDGIHP 473 HSP 2 Score: 92.8189 bits (229), Expect = 8.774e-18
Identity = 49/142 (34.51%), Postives = 78/142 (54.93%), Query Frame = 2
Query: 1184 QLSCKCSGGGDAHASTMVLLNYLSNYSWHAKVVLTLAAFAVIFGEFWLVVQMSAENTLAKSVSLLKQLPDIVENSTSLRPQFDALNKLVKVAMDVTICIVEFKELPSQYISEDTPPMSVASTHIPIAAYWVIRSVVACASQI 1609
Q+ C C+G + TMVL + L Y W AK VL L A +G L V ++ + +A S++ L QLP +E T RP ++LN L+K +DVT CI++F+++P + D + ++I + Y V++S + C QI
Sbjct: 83 QMLCPCTGENEIRKRTMVLFDLLKEYRWDAKAVLVLGVLAATYGGLLLPVHLAICDPVAASIAKLNQLP--IER-TKFRPWLESLNLLIKAMVDVTKCIIKFEKIPFKQAKLDNNILGETLSNIYLTTYRVVKSALTCMQQI 221 HSP 3 Score: 72.7886 bits (177), Expect = 1.791e-11
Identity = 56/205 (27.32%), Postives = 94/205 (45.85%), Query Frame = 2
Query: 3557 EGKFICLYGGEDIEWIQTFTTTAMNVAKAGSFELEMVYVGKSNAKERMQKMINTFATRKFSYYWPNVTSIWFFWARLESMLYSKLQYGRTV----ENDQIMSEVMTVLSFD-GSDQGWAIFCRGAGEMAR-AKGDTALTSFRDFDKWKDNIERDGLVPALKDYLNQLHTPHHCNRLILPGSTGGIPEKVVCAECGRPMERYFMYR 4153
EG+ IC++G E+++WI F + A + G F+LE++Y+ ER + + + P + + FW RLES+ SKL+ R V + D++ EV +L FD G +GW I G G A G+ R +W + + G A++ + H ++P + V C +C PM+R+ Y+
Sbjct: 476 EGREICIFGSENLDWIDEFVSLARKIQNLG-FQLELIYLSNQRRDERAMEESSIL-------FSPTLQQL--FWLRLESIERSKLK--RIVIEPSKPDRVFEEVRNLLDFDYGKHRGWGII--GNGSTAETVDGEKMTERMRKIVRWGEYAKGLGFTEAIEIAAEKPCELSHTA--VVPFEEALTMKVVTCEKCKWPMKRFVAYQ 664
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_28920 vs. DB:Swiss
Analysis Date: 2020-01-28 (
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot )
Total hits: 3
500 1000 1500 2000 2500 3000 3500 4000 Expect = 2.11e-21 / Id = 42.73 Expect = 3.05e-29 / Id = 42.73 Expect = 3.78e-47 / Id = 42.73 Expect = 1.68e-32 / Id = 45.20 Expect = 3.06e-40 / Id = 45.20 Expect = 9.06e-32 / Id = 45.20 Expect = 8.77e-18 / Id = 31.68 Expect = 2.22e-20 / Id = 31.68 Expect = 1.79e-11 / Id = 31.68 Sequence SEOA_ARATH SEOB_ARATH SEOC_ARATH
Match Name E-value Identity Description
SEOA_ARATH 3.783e-47 42.73 Protein SIEVE ELEMENT OCCLUSION A OS=Arabidopsis t... [more] SEOB_ARATH 3.061e-40 45.20 Protein SIEVE ELEMENT OCCLUSION B OS=Arabidopsis t... [more] SEOC_ARATH 2.220e-20 31.68 Protein SIEVE ELEMENT OCCLUSION C OS=Arabidopsis t... [more]
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Sequences
The
following sequences are available for this feature:
mRNA sequence
>rna-TanjilR_28920_La_Tanjil_v1.0 ID=rna-TanjilR_28920_La_Tanjil_v1.0; Name=rna-TanjilR_28920; organism=Lupinus angustifolius; type=mRNA; length=4168bp back to top protein sequence of rna-TanjilR_28920_La_Tanjil_v1.0
>rna-TanjilR_28920_La_Tanjil_v1.0 ID=rna-TanjilR_28920_La_Tanjil_v1.0; Name=rna-TanjilR_28920_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=698bp back to top mRNA from alignment at Chr_LG15-CM007375.1:5839347..5843514+
Legend: polypeptide exon CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_28920_La_Tanjil_v1.0 ID=rna-TanjilR_28920_La_Tanjil_v1.0; Name=rna-TanjilR_28920; organism=Lupinus angustifolius; type=mRNA; length=4168bp; location=Sequence derived from: Chr_LG15-CM007375.1:5839347..5843514+ (Lupinus angustifoliusATGGCTAGCCACCTTCGTCCCATTATGAAGCAAAAGAGGGAGCGACGCTT
GTTTTCTACATCTGATGATAGTGCCATGATGAAGCAAGTTCAAGCCACAC
ATGCCCCTGATGGCCGTGAAGTTGATGTCAAACCCATTATCCAAATCTTA
GATGAAATCTTGATTCAAGTCATTGCTCGCGCCGTTGAGGGTCATCAT GAAAAAAGAGAACA
AGACACATTGGAAACTGCTGCTGTTTTAGCTGATTTTGACATGCTTGACT
CGCTGGCTTTTATcatacaaaaaatttcatgcGAG CTATCATGCAAGTG
TTCTGGAGGAGGAGATGCACATGCATCAACCATGGTGTTACTGAATTATT
TATCTAACTATTCATGGCATGCAAAGGTTGTGCTAACCCTAGCAGCATTT
GCTGTTATTTTTGGAGAGTTTTGGCTTGTTGTTCAGATGAGTGCTGAAAA
TACACTTGCCAAGTCTGTGTCTCTTCTTAAGCAATTGCCTGATATTGTGG
AGAATTCAACTTCCTTGAGACCACAATTTGATGCACTCAACAAGCTTGTG
AAGGTGGCTATGGATGTGacaatatgcattgttgaattcaAGGAGTTACC
CTCTCAATATATCTCAGAGGACACACCTCCTATGTCTGTTGCCAGTACTC
ATATTCCTATTGCTGCTTATTGGGTCATTAGAAGTGTTGTGGCTTGTGCA
TCTCAAATTGAAAGTCTCATAGGCATGAGAAATGA GTCC
ATTGCATCTGCCACAGAGGCATGGGAATTAACCAGTTTGGCTCACAAAGT
CAATAGCATATATGAGCACCTCAAGAACCAACTGGCTCAGTGCTATATAT
ACATAG ATGGGAAGAGGCATATGGAGGCCTTCCATAATCTGATACATCT
TTTCGAGTTGGTCCATGTAGATAACATGAAAATTCTCAAAGCACTGATAT
ATGCTAAGGATGATCTTCCCCCACTTATACAAGGAACTACTAAATCAAAG
GCTA
ATCTTGAGGTGCTAAGGAGGAAAAATGTGTTACTCCTCATATCAGATTTA
GATCTTTCACAAGAAGAGATTATGATACTAGACAACTTGTACAAAGATGC
ACAATCTAGGGGTGAGACACCCTATGAAATGGTATGGATCCCAAtagtgg
acaaagcaacatGGAACGATGTGAATAGAGAGAAGTTTGAGTATTTGCAA
TCATTGATGGCATGGTACAGTGTCCATGACCCATTCATCATTGAACCTTC
AGTGACTAAGTATATCAAAGAAGTGTGGAATTTCACAAAGAAAGCCATTG
TAGTTGCCCTTGATCCACAAGGAAGATTGTCCTCTCCAAATGCTCTTCAT
ATGATATGGATTTGGGGAAATTTGGCATTTCCATTCACACGTGAGAAAGA
AGAATCCTTGTGGAAGCAAGAGCTTTGGAGCCTTGAACTTCTTGTTGATG
GCATTGATCCTATGGTTTTGGAATGG ATGGCAGAAGGTAAATTCATATGCCTTTATGGAGGTGAAGATATTGAATG
GATTCAAACATTCACAACCACAGCAATGAATGTTGCAAAAGCTGGCAGCT
TTGAATTGGAGATGGTTTATGTGGGAAAGAGCAATGCCAAAGAGAGGATG
CAGAAAATGATCAACACCTTTGCCACAAGAAAGTTCAGTTACTATTGGCC
TAATGTCACATCAATTTGGTTCTTTTGGGCAAGATTAGAAAGCATGCTAT
ACTCAAAGTTGCAATATGGTAGAACTGTTGAAAATGACCAAATCATGAGT
GAAGTAATGACTGTACTTAGCTTTGATGGTAGTGATCAAGGGTGGGCTAT
TTTCTGCAGAGGTGCAGGTGAGATGGCTAGGGCTAAAGGTGACACTGCTT
TAACAAGTTTTAGAGATTTTGATAAGTGGAAAGATAATATTGAGAGAGAT
GGTTTGGTTCCAGCACTGAAGGATTACCTGAACCAGCTTCATACTCCTCA
TCATTGCAATAGGCTTATACTTCCTGGGAGCACTGGGGGAATACCTGAAA
AGGTTGTTTGTGCTGAATGTGGTAGACCAATGGAGAGATATTTTATGTAC
CGCTGCTGTGTGGAGTAA back to top Coding sequence (CDS) from alignment at Chr_LG15-CM007375.1:5839347..5843514+
>rna-TanjilR_28920_La_Tanjil_v1.0 ID=rna-TanjilR_28920_La_Tanjil_v1.0; Name=rna-TanjilR_28920; organism=Lupinus angustifolius; type=CDS; length=2097bp; location=Sequence derived from: Chr_LG15-CM007375.1:5839347..5843514+ (Lupinus angustifolius back to top
