rna-TanjilR_08671
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_08671 vs. DB:Swiss
Match: POLR1_ARATH (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1) HSP 1 Score: 338.961 bits (868), Expect = 7.797e-93 Identity = 188/485 (38.76%), Postives = 280/485 (57.73%), Query Frame = -3
Query: 2717 NKTWSLVDLPKRKHEI-GVKWVSKQKLYPDGTISKHKARLVAKGFFQREDVDYSEVFALVARIETIRLVVRISCARNWPLYQLDVKSTFIHGPLEEEVYVQQPPRFIMRGKEQQVYKLKNTLYGLKQAPRAWNKMIDSXXXXXXXXKCVVEYGVYVKDNDDGDLLILCLYVDDLVITGSNLKRIEEFKRIMKVEFEMIDLGK*SYFLGMEFSYTSTSLLMHQKKYASDLLQRFNMDSYNSVTNPVETNVKLTKDEDGEVVDETLFKQIVGSLRYLCNTRPDLSYGVGLVSRFMCRSRKSHTVAAKRILRYVKGTLD*GTLFPVGTQTLKPELELAGFSDSDYGGDLVERKNTPGYLFLLNNAPISWCSKKQPVIALSSCEAEYISGCYASCQTIWLEELMREMKIKLKNPLQLRIDNVSAISMAKNPVSHGRSKHIEIRFHFLRDLVNKERLKLVYWKTELQLANAFTKPLKLGRFEDLKKKMGI 4168
N TW LV P I G +W+ +K DG+++++KARLVAKG+ QR +DY+E F+ V + +IR+V+ ++ R+WP+ QLDV + F+ G L ++VY+ QPP FI + + V KL+ LYGLKQAPRAW + ++L + F V + ++V ++ + +YVDD++ITG++ + + F + D + YFLG+E T L + Q++Y DLL R NM + VT P+ + KL+ ++ D T ++ IVGSL+YL TRPD+SY V +S+FM + H A KRILRY+ GT + G G L L +SD+D+ GD + +T GY+ L + PISW SKKQ + SS EAEY S S + W+ L+ E+ I+L P + DNV A + NPV H R KHI I +HF+R+ V L++V+ T QLA+ TKPL F++ K+G+
Sbjct: 982 NHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKS-IVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGN-----TLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELGIRLTRPPVIYCDNVGATYLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRTAFQNFASKIGV 1460 HSP 2 Score: 133.265 bits (334), Expect = 3.166e-29 Identity = 93/277 (33.57%), Postives = 141/277 (50.90%), Query Frame = -2
Query: 4563 EANEESWS*HLRYGH-----LN-FKSLYRLGSTNMVHDIPLITLHKDMCEVCLAGKQTRKSFQTHSSMRSR*VLEVVHSNVCGPFEEPSLAGN--KYFITFVDEFSRMIWVYVMKQKSEAFGYFLKFKALVER*SGKKVKILRTDGGGEFTS--NAFEQHCQLNDIRHEVTTPYTPQHNGLSERRNILIMDITRSLIKEKCLPQKFWGEAVSTSVYILNQSPTKKLEGKVPREAWNG*KPEVYHLKVFGSLAYKHV-PYQRRTKLQDKSEAMVFISY 5360
+A SW H R GH LN S Y L N H C CL K + F + S++ S LE ++S+V + P L+ + +Y++ FVD F+R W+Y +KQKS+ F+ FK L+E ++ +D GGEF + F QH I H + P+TP+HNGLSER++ I++ +L+ +P+ +W A + +VY++N+ PT L+ + P + G P L+VFG Y + PY + KL DKS VF+ Y
Sbjct: 461 KATHSSW--HARLGHPAPSILNSVISNYSLSVLNPSHKF-------LSCSDCLINKSNKVPF-SQSTINSTRPLEYIYSDV---WSSPILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTRIGTFYSDNGGEFVALWEYFSQH----GISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHASIPKTYWPYAFAVAVYLINRLPTPLLQLESPFQKLFGTSPNYDKLRVFGCACYPWLRPYNQH-KLDDKSRQCVFLGY 719
BLAST of rna-TanjilR_08671 vs. DB:Swiss
Match: POLR2_ARATH (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1) HSP 1 Score: 336.65 bits (862), Expect = 4.034e-92 Identity = 183/485 (37.73%), Postives = 280/485 (57.73%), Query Frame = -3
Query: 2717 NKTWSLVDLPKRKHEI-GVKWVSKQKLYPDGTISKHKARLVAKGFFQREDVDYSEVFALVARIETIRLVVRISCARNWPLYQLDVKSTFIHGPLEEEVYVQQPPRFIMRGKEQQVYKLKNTLYGLKQAPRAWNKMIDSXXXXXXXXKCVVEYGVYVKDNDDGDLLILCLYVDDLVITGSNLKRIEEFKRIMKVEFEMIDLGK*SYFLGMEFSYTSTSLLMHQKKYASDLLQRFNMDSYNSVTNPVETNVKLTKDEDGEVVDETLFKQIVGSLRYLCNTRPDLSYGVGLVSRFMCRSRKSHTVAAKRILRYVKGTLD*GTLFPVGTQTLKPELELAGFSDSDYGGDLVERKNTPGYLFLLNNAPISWCSKKQPVIALSSCEAEYISGCYASCQTIWLEELMREMKIKLKNPLQLRIDNVSAISMAKNPVSHGRSKHIEIRFHFLRDLVNKERLKLVYWKTELQLANAFTKPLKLGRFEDLKKKMGI 4168
N TW LV P I G +W+ +K DG+++++KARLVAKG+ QR +DY+E F+ V + +IR+V+ ++ R+WP+ QLDV + F+ G L +EVY+ QPP F+ + + V +L+ +YGLKQAPRAW + ++L + F + + ++V ++ + +YVDD++ITG++ ++ + F + + YFLG+E L + Q++Y DLL R NM + V P+ T+ KLT ++ D T ++ IVGSL+YL TRPDLSY V +S++M H A KR+LRY+ GT D G G L L +SD+D+ GD + +T GY+ L + PISW SKKQ + SS EAEY S S + W+ L+ E+ I+L +P + DNV A + NPV H R KHI + +HF+R+ V L++V+ T QLA+ TKPL F++ +K+G+
Sbjct: 965 NHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLTVGFVNSISDTSLFVLQRGRS-IIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDLHYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPDPTEYRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGN-----TLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSELQWICSLLTELGIQLSHPPVIYCDNVGATYLCANPVFHSRMKHIALDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRVAFQNFSRKIGV 1443 HSP 2 Score: 143.28 bits (360), Expect = 2.489e-32 Identity = 94/271 (34.69%), Postives = 147/271 (54.24%), Query Frame = -2
Query: 4563 EANEESWS*HLRYGHLNFKSLYRLGSTNMVHDIPLITL-HKDM-CEVCLAGKQTRKSFQTHSSMRSR*VLEVVHSNVCGPFEEP--SLAGNKYFITFVDEFSRMIWVYVMKQKSEAFGYFLKFKALVER*SGKKVKILRTDGGGEFTSNAFEQHCQLNDIRHEVTTPYTPQHNGLSERRNILIMDITRSLIKEKCLPQKFWGEAVSTSVYILNQSPTKKLEGKVPREAWNG*KPEVYHLKVFGSLAYKHV-PYQRRTKLQDKSEAMVFISY 5360
+A SW H R GH SL L S H +P++ HK + C C K + F ++S++ S LE ++S+V + P S+ +Y++ FVD F+R W+Y +KQKS+ F+ FK+LVE ++ L +D GGEF + + I H + P+TP+HNGLSER++ I+++ +L+ +P+ +W A S +VY++N+ PT L+ + P + G P LKVFG Y + PY R KL+DKS+ F+ Y
Sbjct: 440 KATHSSW--HSRLGH---PSLAILNSVISNHSLPVLNPSHKLLSCSDCFINKSHKVPF-SNSTITSSKPLEYIYSDV---WSSPILSIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEFV--VLRDYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEMGLTLLSHASVPKTYWPYAFSVAVYLINRLPTPLLQLQSPFQKLFGQPPNYEKLKVFGCACYPWLRPYNRH-KLEDKSKQCAFMGY 698
BLAST of rna-TanjilR_08671 vs. DB:Swiss
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1) HSP 1 Score: 326.635 bits (836), Expect = 2.177e-89 Identity = 190/498 (38.15%), Postives = 294/498 (59.04%), Query Frame = -3
Query: 2711 LRKNKTWSLVDLPKRKHEIGVKWVSKQKLYPDGTISKHKARLVAKGFFQREDVDYSEVFALVARIETIRLVVRISCARNWPLYQLDVKSTFIHGPLEEEVYVQQPPRFIMRGKEQQVYKLKNTLYGLKQAPRAWNKMIDSXXXXXXXXKCVVEYGVYVKDNDDGDLLILCLYVDDLVITGSNLKRIEEFKRIMKVEFEMIDLGK*SYFLGMEF--SYTSTSLLMHQKKYASDLLQRFNMDSYNSVTNPVETNVKLTKDEDGEVVDE------TLFKQIVGSLRY-LCNTRPDLSYGVGLVSRFMCRSRKSHTVAAKRILRYVKGTLD*GTLFPVGTQTLKPELELAGFSDSDYGGDLVERKNTPGYLFLLNNAPISWCSKKQPVIALSSCEAEYISGCYASCQTIWLEELMREMKIKLKNPLQLRIDNVSAISMAKNPVSHGRSKHIEIRFHFLRDLVNKERLKLVYWKTELQLANAFTKPLKLGRFEDLKKKMGIAA 4177
L+KN T+ LV+LPK K + KWV K K D + ++KARLV KGF Q++ +D+ E+F+ V ++ +IR ++ ++ + + + QLDVK+ F+HG LEEE+Y++QP F + GK+ V KL +LYGLKQAPR W DSF+ + K + VY K + + +IL LYVDD++I G + I + K + F+M DLG LGM+ TS L + Q+KY +L+RFNM + V+ P+ ++KL+K V+E + VGSL Y + TRPD+++ VG+VSRF+ K H A K ILRY++GT F LK G++D+D GD+ RK++ GYLF + ISW SK Q +ALS+ EAEYI+ + IWL+ ++E+ + K + + D+ SAI ++KN + H R+KHI++R+H++R++V+ E LK++ T A+ TK + +FE K+ +G+ +
Sbjct: 837 LQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPILK------GYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLHQKEYV-VYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVPRNKFELCKELVGMHS 1327 HSP 2 Score: 266.159 bits (679), Expect = 1.626e-76 Identity = 144/335 (42.99%), Postives = 207/335 (61.79%), Query Frame = -2
Query: 4422 TNAQ-CLTTIEANEESWS*---HLRYGHLNFKSLYRLGSTNMVHDIPLITLHKDMCEVCLAGKQTRKSFQTHSSMRSR*VLEVVHSNVCGPFEEPSLAGNKYFITFVDEFSRMIWVYVMKQKSEAFGYFLKFKALVER*SGKKVKILRTDGGGEFTSNAFEQHCQLNDIRHEVTTPYTPQHNGLSERRNILIMDITRSLIKEKCLPQKFWGEAVSTSVYILNQSPTKKLEGKVPREAWNG*KPEVYHLKVFGSLAYKHVPYQRRTKLQDKSEAMVFISYHPTG-AYKLYDPMRNKVQINKDVIVLEHENWNWKEMTT--------NLRTIPEITD 5387
TNA+ C + A ++ S H R GH++ K L L +++ T+ C+ CL GKQ R SFQT SS R +L++V+S+VCGP E S+ GNKYF+TF+D+ SR +WVY++K K + F F KF ALVER +G+K+K LR+D GGE+TS FE++C + IRHE T P TPQHNG++ER N I++ RS+++ LP+ FWGEAV T+ Y++N+SP+ L ++P W + HLKVFG A+ HVP ++RTKL DKS +FI Y Y+L+DP++ KV ++DV+ E E +M+ N TIP ++
Sbjct: 404 TNAEICQGELNAAQDEISVDLWHKRMGHMSEKGLQILAKKSLISYAKGTTVKP--CDYCLFGKQHRVSFQT-SSERKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDVVFRESEVRTAADMSEKVKNGIIPNFVTIPSTSN 735 HSP 3 Score: 46.595 bits (109), Expect = 1.626e-76 Identity = 40/153 (26.14%), Postives = 65/153 (42.48%), Query Frame = -3
Query: 5477 CFNCHRTGHYSYECF-VEKGK-----QKNLHDKKAFTTHEDPEVEPLTLMVTNSAKDAHL----E*WYLDLGCSNHMTGHKEWLIDFDLNRKSKVKFVDDSILKVEGARDVVILRNNGSKALISDVLFVLGMKYNQLSIGQLVQKGFTTVMRN 5905
C+NC++ GH+ +C KGK QKN + A + D V L + + HL W +D S+H T ++ + VK + S K+ G D+ I N G ++ DV V ++ N +S L + G+ + N
Sbjct: 232 CYNCNQPGHFKRDCPNPRKGKGETSGQKNDDNTAAMVQNNDNVV----LFINEEEECMHLSGPESEWVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHVPDLRMNLISGIALDRDGYESYFAN 380
BLAST of rna-TanjilR_08671 vs. DB:Swiss
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3) HSP 1 Score: 317.775 bits (813), Expect = 2.599e-86 Identity = 181/497 (36.42%), Postives = 291/497 (58.55%), Query Frame = -3
Query: 2717 NPLRKNKTWSLVDLPKRKHEIGVKWVSKQKLYPDGTISKHKARLVAKGFFQREDVDYSEVFALVARIETIRLVVRISCARNWPLYQLDVKSTFIHGPLEEEVYVQQPPRFIMRGKEQQVYKLKNTLYGLKQAPRAWNKMIDSXXXXXXXXKCVVEYGVYVKD--NDDGDLLILCLYVDDLVITGSNLKRIEEFKRIMKVEFEMIDLGK*SYFLGMEFSYTSTSLLMHQKKYASDLLQRFNMDSYNSVTNPVETNVK---LTKDEDGEVVDETLFKQIVGSLRY--LCNTRPDLSYGVGLVSRFMCRSRKSHTVAAKRILRYVKGTLD*GTLFPVGTQTLKPELELAGFSDSDYGGDLVERKNTPGYLF-LLNNAPISWCSKKQPVIALSSCEAEYISGCYASCQTIWLEELMREMKIKLKNPLQLRIDNVSAISMAKNPVSHGRSKHIEIRFHFLRDLVNKERLKLVYWKTELQLANAFTKPLKLGRFEDLKKKMGI 4183
N + N TW++ P+ K+ + +WV K G ++KARLVA+GF Q+ +DY E FA VARI + R ++ + N ++Q+DVK+ F++G L+EE+Y++ P + V KL +YGLKQA R W ++ + L + +F V+ +Y+ D N + ++ +L LYVDD+VI ++ R+ FKR + +F M DL + +F+G+ + + Q Y +L +FNM++ N+V+ P+ + + L DED T + ++G L Y LC TRPDL+ V ++SR+ ++ KR+LRY+KGT+D +F + L E ++ G+ DSD+ G ++RK+T GYLF + + I W +K+Q +A SS EAEY++ A + +WL+ L+ + IKL+NP+++ DN IS+A NP H R+KHI+I++HF R+ V + L Y TE QLA+ FTKPL RF +L+ K+G+
Sbjct: 915 NAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQG--ISCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENIYVL-LYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYELLNSDEDCN----TPCRSLIGCLMYIMLC-TRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFK---KNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARFVELRDKLGL 1400 HSP 2 Score: 189.119 bits (479), Expect = 2.510e-46 Identity = 109/289 (37.72%), Postives = 156/289 (53.98%), Query Frame = -2
Query: 4485 HLRYGHLNFKSLYRLGSTNMVHDIPLIT---LHKDMCEVCLAGKQTRKSF-QTHSSMRSR*VLEVVHSNVCGPFEEPSLAGNKYFITFVDEFSRMIWVYVMKQKSEAFGYFLKFKALVER*SGKKVKILRTDGGGEFTSNAFEQHCQLNDIRHEVTTPYTPQHNGLSERRNILIMDITRSLIKEKCLPQKFWGEAVSTSVYILNQSPTKKL--EGKVPREAWNG*KPEVYHLKVFGSLAYKHVPYQRRTKLQDKSEAMVFISYHPTGAYKLYDPMRNKVQINKDVIVLE 5333
H R+GH++ L + NM D L+ L ++CE CL GKQ R F Q + L VVHS+VCGP +L YF+ FVD+F+ Y++K KS+ F F F A E KV L D G E+ SN Q C I + +T P+TPQ NG+SER I + R+++ L + FWGEAV T+ Y++N+ P++ L K P E W+ KP + HL+VFG+ Y H+ ++ K DKS +F+ Y P G +KL+D + K + +DV+V E
Sbjct: 419 HERFGHISDGKLLEIKRKNMFSDQSLLNNLELSCEICEPCLNGKQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEMWHNKKPYLKHLRVFGATVYVHIK-NKQGKFDDKSFKSIFVGYEPNG-FKLWDAVNEKFIVARDVVVDE 705
BLAST of rna-TanjilR_08671 vs. DB:Swiss
Match: YCH4_YEAST (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2) HSP 1 Score: 156.762 bits (395), Expect = 2.403e-40 Identity = 101/307 (32.90%), Postives = 166/307 (54.07%), Query Frame = -3
Query: 3014 LDVKSTFIHGPLEEEVYVQQPPRFIMRGKEQQVYKLKNTLYGLKQAPRAWNKMIDSXXXXXXXXKCVVEYGVYVKDNDDGDLLILCLYVDDLVITGSNLKRIEEFKRIMKVEFEMIDLGK*SYFLGMEFSYTSTS-LLMHQKKYASDLLQRFNMDSYNSVTNPVETNVKLTKDEDGEVVDETLFKQIVGSLRYLCNT-RPDLSYGVGLVSRFMCRSRKSHTVAAKRILRYVKGTLD*GTLFPVGTQTLKPELELAGFSDSDYGGDLVERKNTPGYLFLLNNAPISWCSKK-QPVIALSSCEAEYISG 3925
+DV + F++ ++E +YV+QPP F+ V++L +YGLKQAP WN+ I++ L K+ F + E+G+Y + DG + I +YVDDL++ + K + K+ + + M DLGK FLG+ +S + + + Y + ++++ P+ + L + + D T ++ IVG L + NT RPD+SY V L+SRF+ R H +A+R+LRY+ T + G+Q L L + D+ +G +T GY+ LL AP++W SKK + VI + S EAEYI+
Sbjct: 1 MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKKIGFCRHEGEHGLYFRSTSDGPIYI-AVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKVDKFLGLNIHQSSNGDITLSLQDYIAKAASESEINTFKLTQTPLCNSKPLFETTSPHLKDITPYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTTRSMCLKYRSGSQ-----LALTVYCDASHGAIHDLPHSTGGYVTLLAGAPVTWSSKKLKGVIPVPSTEAEYITA 301
BLAST of rna-TanjilR_08671 vs. DB:Swiss
Match: M810_ARATH (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 2.877e-29 Identity = 75/231 (32.47%), Postives = 117/231 (50.65%), Query Frame = -3
Query: 2987 LILCLYVDDLVITGSNLKRIEEFKRIMKVEFEMIDLGK*SYFLGMEFSYTSTSLLMHQKKYASDLLQRFNMDSYNSVTNPVETNVKLTKDEDGEVVDETLFKQIVGSLRYLCNTRPDLSYGVGLVSRFMCRSRKSHTVAAKRILRYVKGTLD*GTLFPVGTQTLKPELELAGFSDSDYGGDLVERKNTPGYLFLLNNAPISWCSKKQPVIALSSCEAEYISGCYASCQTIW 3679
+ L LYVDD+++TGS+ + + F M DLG YFLG++ + L + Q KYA +L M ++ P+ + + + D + F+ IVG+L+YL TRPD+SY V +V + M + KR+LRYVKGT+ G ++ L + F DSD+ G R++T G+ L ISW +K+QP ++ SS E EY + + + W
Sbjct: 1 MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPLPLKLN-SSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSK-----LNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225
BLAST of rna-TanjilR_08671 vs. DB:Swiss
Match: YD15B_YEAST (Transposon Ty1-DR6 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY1B-DR6 PE=3 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 1.434e-21 Identity = 143/528 (27.08%), Postives = 240/528 (45.45%), Query Frame = -3
Query: 2726 WLKNSNPLRKNKTWSLVDLPKRKHEIGVKWV-------SKQKLYPDGTISKHKARLVAKGFFQREDVDYSEVFALVARIETIRLVVRISCARNWPLYQLDVKSTFIHGPLEEEVYVQQPPRFIMRGKEQQVYKLKNTLYGLKQAPRAWNKMIDSXXXXXXXXKCVVEYGVYVKDNDDGDLLILCLYVDDLVITGSNL---KRIEEFKRIMKVEFEMIDLGK*SYFLGMEFSYTSTSLLMHQKKYASDLLQRFNMDSYNSVTNPV-ETNVKLTK---------------DEDGEVVDETLFKQIVGSLRYLCNT--------RPDLSYGVGLVSRFMCRSRKSHTVAAKRILRYVKGTLD*GTLFPVGTQTLKPELELAGFSDSDYGGDLVERKNTPGYLFLLNNAPISWCSKKQPVIALSSCEAEYISGCYASCQTIWLEELMREMKIKLKNPL--QLRIDNVSAISMAKNPVSHG-RSKHIEIRFHFLRDLVNKERLKLVYWKTELQLANAFTKPLKLGRFEDLKKK 4198
+ K N L K KTW + RK EI K V +K++ DGT HKAR VA+G Q D S + + + + ++ N+ + QLD+ S +++ ++EE+Y++ PP M K + +LK +LYGLKQ+ W + I S+L + + V + K++ + +CL+VDD+V+ NL KRI E K M+ + ++I+LG+ E Y +L + KY + M+ NS+T + + NV L D+D +DE +K+ V ++ L R DL Y + +++ + + +++++ T D ++ T KP+ +L SD+ YG + G +FLLN I S K + S+ EAE + A L L++E+ K P+ L D+ S IS+ K+ R++ + LRD V+ L + Y +T+ +A+ TKPL + F+ L K
Sbjct: 1254 YHKEVNQLLKMKTWDTDEYYDRK-EIDPKRVINSMFIFNKKR---DGT---HKARFVARGDIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEELYIRPPPHLGMNDK---LIRLKKSLYGLKQSGANWYETIKSYLIQQCGMEEVRGWSCVFKNSQ----VTICLFVDDMVLFSKNLNSNKRIIE-KLKMQYDTKIINLGE----SDEEIQY---DILGLEIKYQRGKYMKLGME--NSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQDELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLIWHKNKPT-KPDNKLVAISDASYGNQPYYKSQI-GNIFLLNGKVIGGKSTKASLTCTSTTEAEIHAVSEAIPLLNNLSHLVQELN---KKPIIKGLLTDSRSTISIIKSTNEEKFRNRFFGTKAMRLRDEVSGNNLYVYYIETKKNIADVMTKPLPIKTFKLLTNK 1752 HSP 2 Score: 67.781 bits (164), Expect = 2.302e-9 Identity = 47/184 (25.54%), Postives = 82/184 (44.57%), Query Frame = -2
Query: 4704 CEVCLAGKQTRKSFQTHSSMR---SR*VLEVVHSNVCGPFEEPSLAGNKYFITFVDEFSRMIWVYVMKQKSEA--FGYFLKFKALVER*SGKKVKILRTDGGGEFTSNAFEQHCQLNDIRHEVTTPYTPQHNGLSERRNILIMDITRSLIKEKCLPQKFWGEAVSTSVYILNQ--SPTKKLEGK 5234
C CL GK T+ S ++ S + +H+++ GP + YFI+F DE ++ WVY + + E F A ++ V +++ D G E+T+ + + N I TT + +G++ER N ++D R+ ++ LP W A+ S + N SP K +
Sbjct: 637 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPNSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNYLWFSAIEFSTIVRNSLASPKSKKSAR 820
BLAST of rna-TanjilR_08671 vs. DB:Swiss
Match: YL14B_YEAST (Transposon Ty1-LR4 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY1B-LR4 PE=5 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 1.521e-21 Identity = 143/528 (27.08%), Postives = 240/528 (45.45%), Query Frame = -3
Query: 2726 WLKNSNPLRKNKTWSLVDLPKRKHEIGVKWV-------SKQKLYPDGTISKHKARLVAKGFFQREDVDYSEVFALVARIETIRLVVRISCARNWPLYQLDVKSTFIHGPLEEEVYVQQPPRFIMRGKEQQVYKLKNTLYGLKQAPRAWNKMIDSXXXXXXXXKCVVEYGVYVKDNDDGDLLILCLYVDDLVITGSNL---KRIEEFKRIMKVEFEMIDLGK*SYFLGMEFSYTSTSLLMHQKKYASDLLQRFNMDSYNSVTNPV-ETNVKLTK---------------DEDGEVVDETLFKQIVGSLRYLCNT--------RPDLSYGVGLVSRFMCRSRKSHTVAAKRILRYVKGTLD*GTLFPVGTQTLKPELELAGFSDSDYGGDLVERKNTPGYLFLLNNAPISWCSKKQPVIALSSCEAEYISGCYASCQTIWLEELMREMKIKLKNPL--QLRIDNVSAISMAKNPVSHG-RSKHIEIRFHFLRDLVNKERLKLVYWKTELQLANAFTKPLKLGRFEDLKKK 4198
+ K N L K KTW + RK EI K V +K++ DGT HKAR VA+G Q D S + + + + ++ N+ + QLD+ S +++ ++EE+Y++ PP M K + +LK +LYGLKQ+ W + I S+L + + V + K++ + +CL+VDD+V+ NL KRI E K M+ + ++I+LG+ E Y +L + KY + M+ NS+T + + NV L D+D +DE +K+ V ++ L R DL Y + +++ + + +++++ T D ++ T KP+ +L SD+ YG + G +FLLN I S K + S+ EAE + A L L++E+ K P+ L D+ S IS+ K+ R++ + LRD V+ L + Y +T+ +A+ TKPL + F+ L K
Sbjct: 1254 YHKEVNQLLKMKTWDTDEYYDRK-EIDPKRVINSMFIFNKKR---DGT---HKARFVARGDIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEELYIRPPPHLGMNDK---LIRLKKSLYGLKQSGANWYETIKSYLIQQCGMEEVRGWSCVFKNSQ----VTICLFVDDMVLFSKNLNSNKRIIE-KLKMQYDTKIINLGE----SDEEIQY---DILGLEIKYQRGKYMKLGME--NSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQDELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLIWHKNKPT-KPDNKLVAISDASYGNQPYYKSQI-GNIFLLNGKVIGGKSTKASLTCTSTTEAEIHAVSEAIPLLNNLSHLVQELN---KKPIIKGLLTDSRSTISIIKSTNEEKFRNRFFGTKAMRLRDEVSGNNLYVYYIETKKNIADVMTKPLPIKTFKLLTNK 1752 HSP 2 Score: 68.5514 bits (166), Expect = 1.590e-9 Identity = 47/184 (25.54%), Postives = 82/184 (44.57%), Query Frame = -2
Query: 4704 CEVCLAGKQTRKSFQTHSSMR---SR*VLEVVHSNVCGPFEEPSLAGNKYFITFVDEFSRMIWVYVMKQKSEA--FGYFLKFKALVER*SGKKVKILRTDGGGEFTSNAFEQHCQLNDIRHEVTTPYTPQHNGLSERRNILIMDITRSLIKEKCLPQKFWGEAVSTSVYILNQ--SPTKKLEGK 5234
C CL GK T+ S ++ S + +H+++ GP + YFI+F DE ++ WVY + + E F A ++ V +++ D G E+T+ + + N I TT + +G++ER N ++D R+ ++ LP W A+ S + N SP K +
Sbjct: 637 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPNSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSKKSAR 820
BLAST of rna-TanjilR_08671 vs. DB:Swiss
Match: YN12B_YEAST (Transposon Ty1-NL2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY1B-NL2 PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 3.704e-21 Identity = 132/517 (25.53%), Postives = 237/517 (45.84%), Query Frame = -3
Query: 2726 WLKNSNPLRKNKTWSLVDLPKRKHEIGVKWVSKQKLY----PDGTISKHKARLVAKGFFQREDVDYSEVFALVARIETIRLVVRISCARNWPLYQLDVKSTFIHGPLEEEVYVQQPPRFIMRGKEQQVYKLKNTLYGLKQAPRAWNKMIDSXXXXXXXXKCVVEYGVYVKDNDDGDLLILCLYVDDLVITGSNLKRIEEFKRIMKVEFE--MIDLGK*SY-----FLGMEFSYTSTSLL-MHQKKYASDLLQRFNMD---SYNSVTNPVETNVKLTKDEDGEVVDETLFKQIVGSLRYLCNT--------RPDLSYGVGLVSRFMCRSRKSHTVAAKRILRYVKGTLD*GTLFPVGTQTLKPELELAGFSDSDYGGDLVERKNTPGYLFLLNNAPISWCSKKQPVIALSSCEAEYISGCYASCQTIWLEELMREMKIKLKNPL--QLRIDNVSAISMAKNPVSHG-RSKHIEIRFHFLRDLVNKERLKLVYWKTELQLANAFTKPLKLGRFEDLKKK 4198
+ K N L K KTW RK EI K V DGT HKAR VA+G Q D S + + + + ++ N+ + QLD+ S +++ ++EE+Y++ PP M K + +LK +LYGLKQ+ W + I S+L + + V + K++ + +CL+VDD+++ +L ++ +K +++ +I+LG+ LG+E Y + + + +K ++ L + N+ ++ P + + + D+D +DE +K+ V ++ L R DL Y + +++ + + +++++ T D ++ T KP+ +L SD+ YG K+ G +FLLN I S K + S+ EAE + A L L++E+ K P+ L D+ S IS+ K+ R++ + LRD V+ L + Y +T+ +A+ TKPL + F+ L K
Sbjct: 1248 YHKEVNQLLKMKTWDTDKYYDRK-EIDPKRVINSMFIFNRKRDGT---HKARFVARGDIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEELYIRPPPHLGMNDK---LIRLKKSLYGLKQSGANWYETIKSYLIEQCDMEEVRGWSCVFKNSQ----VTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGLEIKYQRSKYMKLGMEKSLTEKLPKLNVHLNPKGKKLSAPGQPGLYI--DQDELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLIWHKNKPT-KPDNKLVAISDASYGNQPY-YKSQIGNIFLLNGKVIGGKSTKASLTCTSTTEAEIHAVSEAIPLLNNLSHLVQELN---KKPIIKGLLTDSRSTISIIKSTNEEKFRNRFFGTKAMRLRDEVSGNNLYVYYIETKKNIADVMTKPLPIKTFKLLTNK 1746 HSP 2 Score: 68.5514 bits (166), Expect = 1.378e-9 Identity = 47/184 (25.54%), Postives = 82/184 (44.57%), Query Frame = -2
Query: 4704 CEVCLAGKQTRKSFQTHSSMR---SR*VLEVVHSNVCGPFEEPSLAGNKYFITFVDEFSRMIWVYVMKQKSEA--FGYFLKFKALVER*SGKKVKILRTDGGGEFTSNAFEQHCQLNDIRHEVTTPYTPQHNGLSERRNILIMDITRSLIKEKCLPQKFWGEAVSTSVYILNQ--SPTKKLEGK 5234
C CL GK T+ S ++ S + +H+++ GP + YFI+F DE ++ WVY + + E F A ++ V +++ D G E+T+ + + N I TT + +G++ER N ++D R+ ++ LP W A+ S + N SP K +
Sbjct: 637 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSKKSAR 820
BLAST of rna-TanjilR_08671 vs. DB:Swiss
Match: YB21B_YEAST (Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-B PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 1.110e-20 Identity = 118/475 (24.84%), Postives = 222/475 (46.74%), Query Frame = -3
Query: 2726 DGTISKHKARLVAKGFFQREDVDYSEVFALVARIETIRLVVRISCARNWPLYQLDVKSTFIHGPLEEEVYVQQPPRFIMRGKEQQVYKLKNTLYGLKQAPRAWNKMIDSXXXXXXXXKCVVEYGVYVKDNDDGDLLILCLYVDDLVITGSNLKRIEEFKRIMKVEFE--MIDLGK*SY-----FLGMEFSYTSTSLL-MHQKKYASDLLQRFNM---DSYNSVTNPVETNVKLTKDEDGEVVDETLFKQIVGSLRYLCNT--------RPDLSYGVGLVSRFMCRSRKSHTVAAKRILRYVKGTLD*GTLFPVGTQTLKPELELAGFSDSDYGGDLVERKNTPGYLFLLNNAPISWCSKKQPVIALSSCEAEYISGCYASCQTIWLEELMREMKIKLKNPL--QLRIDNVSAISMAKNPVSHG-RSKHIEIRFHFLRDLVNKERLKLVYWKTELQLANAFTKPLKLGRFEDLKKK 4084
DGT HKAR VA+G Q D S++ + + + I+ ++ + QLD+ S +++ ++EE+Y++ PP G ++ +L+ +LYGLKQ+ W + I S+L + V + K++ + +CL+VDD+++ +L E+ +K +++ +I+LG+ LG+E Y + + + +K ++ L + N+ ++ P + + D+D +DE +K+ V ++ L R DL Y + +++ + + +++++ T D ++ T KP+ +L SD+ YG K+ G +FLLN I S K + S+ EAE + A L L++E+ K P+ L D+ S IS+ K+ R++ + LRD V+ L + Y +T+ +A+ TKPL + F+ L K
Sbjct: 1310 DGT---HKARFVARGDIQHPDTYDSDMQSNTVHHYALMTSLSIALDNDYYITQLDISSAYLYADIKEELYIRPPPHL---GLNDKLLRLRKSLYGLKQSGANWYETIKSYLINCCDMQEVRGWSCVFKNSQ----VTICLFVDDMILFSKDLNANEKIITTLKKQYDTKIINLGESDNEIQYDILGLEIKYQRSKYMKLGMEKSLTEKLPKLNVPLNPKGKKLSAPGQPGHYI--DQDELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLIWHKNKPT-KPDNKLVAISDASYGNQPY-YKSQIGNIFLLNGKVIGGKSTKASLTCTSTTEAEIHAVSEAIPLLNNLSHLVQELN---KKPIIKGLLTDSRSTISIIKSTNEEKFRNRFFGTKAMRLRDEVSGNNLYVYYIETKKNIADVMTKPLPIKTFKLLTNK 1767 HSP 2 Score: 74.7146 bits (182), Expect = 2.195e-11 Identity = 56/210 (26.67%), Postives = 90/210 (42.86%), Query Frame = -2
Query: 4734 HLRYGHLNFKSLYRLGSTNMV-----HDIPLITLHKDMCEVCLAGKQTRKSFQTHSSMR---SR*VLEVVHSNVCGPFEEPSLAGNKYFITFVDEFSRMIWVYVMKQKSEA--FGYFLKFKALVER*SGKKVKILRTDGGGEFTSNAFEQHCQLNDIRHEVTTPYTPQHNGLSERRNILIMDITRSLIKEKCLPQKFWGEAVSTSVYILN 5333
H GH NF+S+ + N V DI C CL GK T+ S ++ S + +H+++ GP + YFI+F DE +R WVY + + E F A ++ +V +++ D G E+T+ + I TT + +G++ER N +++ R+L+ LP W AV S I N
Sbjct: 595 HRMLGHANFRSIQKSLKKNAVTYLKESDIEWSNASTYQCPDCLIGKSTKHRHVKGSRLKYQESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRN 804 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_08671 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_08671_La_Tanjil_v1.0 ID=rna-TanjilR_08671_La_Tanjil_v1.0; Name=rna-TanjilR_08671; organism=Lupinus angustifolius; type=mRNA; length=11298bpback to top protein sequence of rna-TanjilR_08671_La_Tanjil_v1.0 >rna-TanjilR_08671_La_Tanjil_v1.0 ID=rna-TanjilR_08671_La_Tanjil_v1.0; Name=rna-TanjilR_08671_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=976bpback to top mRNA from alignment at Chr_LG15-CM007375.1:15729654..15740951- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_08671_La_Tanjil_v1.0 ID=rna-TanjilR_08671_La_Tanjil_v1.0; Name=rna-TanjilR_08671; organism=Lupinus angustifolius; type=mRNA; length=11298bp; location=Sequence derived from: Chr_LG15-CM007375.1:15729654..15740951- (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG15-CM007375.1:15729654..15740951- >rna-TanjilR_08671_La_Tanjil_v1.0 ID=rna-TanjilR_08671_La_Tanjil_v1.0; Name=rna-TanjilR_08671; organism=Lupinus angustifolius; type=CDS; length=2931bp; location=Sequence derived from: Chr_LG15-CM007375.1:15729654..15740951- (Lupinus angustifoliusback to top |