rna-TanjilR_28503
|
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_28503 vs. DB:Swiss
Match: GAT12_ARATH (GATA transcription factor 12 OS=Arabidopsis thaliana OX=3702 GN=GATA12 PE=2 SV=1) HSP 1 Score: 221.861 bits (564), Expect = 7.685e-67 Identity = 128/234 (54.70%), Postives = 150/234 (64.10%), Query Frame = 1
Query: 895 EDLQKMQLISGIKASNDDASKNHELQPQPNNPTSPVFNPQVSVPAKARSKRTRVPPCNWTSRLLV---------LSPTILSPVPHLDDHIILPQKPAP------------KRRDSS--ERG--EGRKCLHCATGKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFMMTRHSNSHRKVMELRRQKEMMEAQDLQFIQHH-QNMNMMYDFSSNRDDYLIHQHVGPYF 1518
ED+ K++LISG K+ D K+ P+ N +SP+F VSVPAKARSKR+R CNW SR L+ TILS HL P AP +++D S E G E R+CLHCAT KTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTF++ +HSNSHRKVMELRRQKEM A HH + M++D SS+ DDYLIH +VGP F
Sbjct: 96 EDVHKLELISGFKSRPD--PKSDTGSPENPNSSSPIFTTDVSVPAKARSKRSRAAACNWASRGLLKETFYDSPFTGETILSSQQHLSPPTSPPLLMAPLGKKQAVDGGHRRKKDVSSPESGGAEERRCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLAKHSNSHRKVMELRRQKEMSRAHHEFIHHHHGTDTAMIFDVSSDGDDYLIHHNVGPDF 327
BLAST of rna-TanjilR_28503 vs. DB:Swiss
Match: GATA9_ARATH (GATA transcription factor 9 OS=Arabidopsis thaliana OX=3702 GN=GATA9 PE=2 SV=1) HSP 1 Score: 202.216 bits (513), Expect = 1.472e-59 Identity = 109/214 (50.93%), Postives = 134/214 (62.62%), Query Frame = 1
Query: 895 EDLQKMQLISGIKASNDDASK-NHELQPQP--NNPTSPVFNPQVSVPAKARSKRTRVPPCNWTSRLLVLSPTILSPVPHLDDHIILPQKPAPKRRDSSERGEGRKCLHCATGKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFMMTRHSNSHRKVMELRRQKEMMEAQDLQFIQHHQNMNMMYDFSSNRDDYLIH---QHVGPYF 1518
ED K+ L SG+K S H ++P+P ++ + V+VPAKARSKR+R W SRLL L+ + + + D E G GR+CLHCAT KTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPA+SPTF+M RHSNSHRKVMELRRQKEM +D + + N++ D SN +D+L+H HV P F
Sbjct: 94 EDQDKLHLFSGLKNPQTTGSTLTHLIKPEPELDHQFIDIDESNVAVPAKARSKRSRSAASTWASRLLSLADSDETNPKKKQRRVKEQDFAGDMDVDCGESGGGRRCLHCATEKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFVMARHSNSHRKVMELRRQKEM---RDEHLLSQLRCENLLMDIRSNGEDFLMHNNTNHVAPDF 304
BLAST of rna-TanjilR_28503 vs. DB:Swiss
Match: GATA4_ARATH (GATA transcription factor 4 OS=Arabidopsis thaliana OX=3702 GN=GATA4 PE=2 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 1.070e-41 Identity = 84/176 (47.73%), Postives = 109/176 (61.93%), Query Frame = 1
Query: 889 PNEDLQKMQLISGIKASNDDASKNHELQPQPNNPTSPVFNPQVSVPAKARSKRTRVPPCNWTSRLLVLSPTILSPVPHLDDHIILPQKPAPKRRDSSERGEG-RKCLHCATGKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFMMTRHSNSHRKVMELRRQKEMMEA 1413
P++D ++ +S DD+ + P NP + P++S K RS+R+R P + +S + L H + KP S +G R+C HCA+ KTPQWRTGP+GPKTLCNACGVRYKSGRLVPEYRPA+SPTF++T+HSNSHRKVMELRRQKE E+
Sbjct: 70 PSDDAAHLEWLSRFV---DDSFSDF-----PANPLTMTVRPEISFTGKPRSRRSRAPAPSVAGTWAPMSESELC-------HSVAKPKPKKVYNAESVTADGARRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHSNSHRKVMELRRQKEQQES 230
BLAST of rna-TanjilR_28503 vs. DB:Swiss
Match: GATA2_ARATH (GATA transcription factor 2 OS=Arabidopsis thaliana OX=3702 GN=GATA2 PE=2 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 2.511e-39 Identity = 92/193 (47.67%), Postives = 113/193 (58.55%), Query Frame = 1
Query: 889 PNEDLQKMQLISGIKASNDDASKNHELQPQPNNPTSPVFNPQVSVPAKARSKRTRVP-PCNWTSRLLVLSPTILSPVPHLDDHIIL--PQKPAPKRR--------------DSSERGEG---RKCLHCATGKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFMMTRHSNSHRKVMELRRQKEMM 1407
P++D ++ +S DD+ + P TS + S P K RSKR+R P P T SP+P +H L K PK+ SSE EG R+C HCA+ KTPQWRTGP+GPKTLCNACGVR+KSGRLVPEYRPA+SPTF++T+HSNSHRKVMELRRQKE+M
Sbjct: 72 PSDDAAHLEWLSQFV---DDSFADFPANPLGGTMTS--VKTETSFPGKPRSKRSRAPAPFAGT----------WSPMPLESEHQQLHSAAKFKPKKEQSGGGGGGGGRHQSSSSETTEGGGMRRCTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLVPEYRPASSPTFVLTQHSNSHRKVMELRRQKEVM 249
BLAST of rna-TanjilR_28503 vs. DB:Swiss
Match: GATA7_ARATH (GATA transcription factor 7 OS=Arabidopsis thaliana OX=3702 GN=GATA7 PE=2 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 1.651e-32 Identity = 77/176 (43.75%), Postives = 97/176 (55.11%), Query Frame = 1
Query: 889 PNEDLQKMQLISGIKASNDDASKNHELQPQPNNPTSPVFNPQVSVPAKARSKRTRVPPCNWTSRLLVLSPTILSPVPHLDDHIILPQKPAPKRRDSSERGEG------RKCLHCATGKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFMMTRHSNSHRKVMELRRQK 1398
P DL+ ++ +S D S+++ P NP + V + VP K RSKR R W+ + SP P L + +K ++ D+S G R C HC KTPQWR GP+G KTLCNACGVR+KSGRL+PEYRPA SPTF HSNSHRKV+ELR K
Sbjct: 67 PVGDLEDLEWLSNF--VEDSFSESYISSDFPVNPVASVEVRRQCVPVKPRSKRRRTNGRIWS---------MESPSPLLSTAVARRKKRGRQKVDASYGGVVQQQQLRRCCSHCGVQKTPQWRMGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTFTNEIHSNSHRKVLELRLMK 231
BLAST of rna-TanjilR_28503 vs. DB:Swiss
Match: GATA3_ARATH (GATA transcription factor 3 OS=Arabidopsis thaliana OX=3702 GN=GATA3 PE=2 SV=2) HSP 1 Score: 127.487 bits (319), Expect = 3.548e-32 Identity = 75/174 (43.10%), Postives = 102/174 (58.62%), Query Frame = 1
Query: 889 PNEDLQKMQLISGIKASNDDASKNHELQPQPNNPTSPVFNPQVSVPAKARSKRTRVPPCNWTSRLLVLSPTILSPVPHLDDHIILPQKPAPKRRDSSERGEGRKCLHCATGKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFMMTRHSNSHRKVMELRRQKEMME 1410
P+ED+++++ +S + +D +S L + T P F+ +P K R+KR+R SR+ L T +H + K++ + R+C HC T TPQWRTGP+GPKTLCNACGVR+KSGRL PEYRPA SPTF HSN HRKV+ELR+ KE+ E
Sbjct: 94 PDEDVEELEWVS--RVVDDCSSPEVSLLLTQTHKTKPSFS---RIPVKPRTKRSRNSLTG--SRVWPLVST---------NHQHAATEQLRKKKQETVLVFQRRCSHCGTNNTPQWRTGPVGPKTLCNACGVRFKSGRLCPEYRPADSPTFSNEIHSNLHRKVLELRKSKELGE 251
BLAST of rna-TanjilR_28503 vs. DB:Swiss
Match: GATA5_ARATH (GATA transcription factor 5 OS=Arabidopsis thaliana OX=3702 GN=GATA5 PE=2 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 2.751e-30 Identity = 75/160 (46.88%), Postives = 84/160 (52.50%), Query Frame = 1
Query: 1021 VPAKARSKRTR---------------------------VPPCNWTSRLLVLSPTILSPVPHLDDHIILPQKPAPKRRDSSERGE------GRKCLHCATGKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFMMTRHSNSHRKVMELRRQKE 1401
VPAKARSKR R P W S +L P + S P P+K + +S GE RKC HC KTPQWR GPMG KTLCNACGVRYKSGRL+PEYRPA SPTF HSN HRKV+E+RR+KE
Sbjct: 164 VPAKARSKRNRNGLKVWSLGSSSSSGPSSSGSTSSSSSGPSSPWFSGAELLEPVVTSERPPF------PKKHKKRSAESVFSGELQQLQPQRKCSHCGVQKTPQWRAGPMGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVIEMRRKKE 317
BLAST of rna-TanjilR_28503 vs. DB:Swiss
Match: GATA8_ARATH (GATA transcription factor 8 OS=Arabidopsis thaliana OX=3702 GN=GATA8 PE=2 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 3.334e-30 Identity = 59/89 (66.29%), Postives = 66/89 (74.16%), Query Frame = 1
Query: 1174 SSERGEGRKCLHCATGKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFMMTRHSNSHRKVMELRRQK-----EMMEAQDLQ 1425
SSE+ RKC+HC KTPQWR GPMGPKTLCNACGVRYKSGRL PEYRPAASPTF HSNSH+KV E+R ++ + E DLQ
Sbjct: 222 SSEQYPLRKCMHCEVTKTPQWRLGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFTPALHSNSHKKVAEMRNKRCSDGSYITEENDLQ 310
BLAST of rna-TanjilR_28503 vs. DB:Swiss
Match: GATA1_ARATH (GATA transcription factor 1 OS=Arabidopsis thaliana OX=3702 GN=GATA1 PE=2 SV=2) HSP 1 Score: 122.094 bits (305), Expect = 4.312e-30 Identity = 53/68 (77.94%), Postives = 57/68 (83.82%), Query Frame = 1
Query: 1192 GRKCLHCATGKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFMMTRHSNSHRKVMELRRQ 1395
GRKC HC KTPQWR GP GPKTLCNACGVRYKSGRLVPEYRPA SPTF HSNSHRK++E+R+Q
Sbjct: 193 GRKCQHCGAEKTPQWRAGPAGPKTLCNACGVRYKSGRLVPEYRPANSPTFTAELHSNSHRKIVEMRKQ 260
BLAST of rna-TanjilR_28503 vs. DB:Swiss
Match: GAT11_ARATH (GATA transcription factor 11 OS=Arabidopsis thaliana OX=3702 GN=GATA11 PE=2 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 7.144e-30 Identity = 53/76 (69.74%), Postives = 63/76 (82.89%), Query Frame = 1
Query: 1174 SSERGEGRKCLHCATGKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFMMTRHSNSHRKVMELRRQKE 1401
S+ G RKC HC T KTPQWR GP GPKTLCNACGVR++SGRLVPEYRPA+SPTF+ HSNSHRK++E+RR+ +
Sbjct: 213 SNSDGIVRKCTHCETTKTPQWREGPSGPKTLCNACGVRFRSGRLVPEYRPASSPTFIPAVHSNSHRKIIEMRRKDD 288 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_28503 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_28503_La_Tanjil_v1.0 ID=rna-TanjilR_28503_La_Tanjil_v1.0; Name=rna-TanjilR_28503; organism=Lupinus angustifolius; type=mRNA; length=1524bpback to top protein sequence of rna-TanjilR_28503_La_Tanjil_v1.0 >rna-TanjilR_28503_La_Tanjil_v1.0 ID=rna-TanjilR_28503_La_Tanjil_v1.0; Name=rna-TanjilR_28503_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=335bpback to top mRNA from alignment at Chr_LG15-CM007375.1:18786295..18787818+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_28503_La_Tanjil_v1.0 ID=rna-TanjilR_28503_La_Tanjil_v1.0; Name=rna-TanjilR_28503; organism=Lupinus angustifolius; type=mRNA; length=1524bp; location=Sequence derived from: Chr_LG15-CM007375.1:18786295..18787818+ (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG15-CM007375.1:18786295..18787818+ >rna-TanjilR_28503_La_Tanjil_v1.0 ID=rna-TanjilR_28503_La_Tanjil_v1.0; Name=rna-TanjilR_28503; organism=Lupinus angustifolius; type=CDS; length=1008bp; location=Sequence derived from: Chr_LG15-CM007375.1:18786295..18787818+ (Lupinus angustifoliusback to top Annotated Terms
The
following terms have been associated with
this mRNA:
|