rna-TanjilR_24203
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_24203 vs. DB:Swiss
Match: Y2287_ARATH (GTP-binding protein At2g22870 OS=Arabidopsis thaliana OX=3702 GN=EMB2001 PE=2 SV=2) HSP 1 Score: 95.1301 bits (235), Expect = 4.963e-20 Identity = 47/89 (52.81%), Postives = 63/89 (70.79%), Query Frame = 1
Query: 208 LFIPPETRVPVDSGSARILKGSNIVLSNYARDSNVVQADYVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSIVRRKKLALTSKKPG 474
LFIPP + + +L GSNIV+ +A S + + ++VKSS R DCP D PE A++GRSNVGKSSL+N +VR+K++ALTSKKPG
Sbjct: 67 LFIPPGVEIE-ELTDDMVLPGSNIVIGPFAGHSQIKEVEFVKSSARARDCPKDDRPEIAILGRSNVGKSSLINCLVRKKEVALTSKKPG 154 HSP 2 Score: 86.6557 bits (213), Expect = 3.234e-17 Identity = 41/69 (59.42%), Postives = 52/69 (75.36%), Query Frame = 3
Query: 2304 IPMTIIFTKCDXXXXXXXXXXXPEENVNDFQDLIRGSFETVPPWIMTSSVTNQGRDEILLHMAQLRNYW 2510
+PMT +FTKCDK K K P+EN+ FQ +IR +F+ PPWI+TSSV+ GRDE+LLHM+QLRNYW
Sbjct: 232 VPMTFVFTKCDKMKATKGKR--PDENIKAFQQIIRENFKVHPPWILTSSVSGLGRDELLLHMSQLRNYW 298 HSP 3 Score: 69.707 bits (169), Expect = 1.593e-11 Identity = 30/55 (54.55%), Postives = 39/55 (70.91%), Query Frame = 1
Query: 1402 YASAPQELRMNWDNFTKDYFLNRSTLVSVFLLIDASIPAKQIDLDYASWLGQNQV 1566
+A + +W FTK YFLNR +LV V LLIDAS+P ++IDLD A+WLG+N V
Sbjct: 178 FAKVSDAAKTDWSAFTKGYFLNRDSLVCVLLLIDASVPPQKIDLDCANWLGRNNV 232
BLAST of rna-TanjilR_24203 vs. DB:Swiss
Match: ENGB_LACGA (Probable GTP-binding protein EngB OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243 / JCM 1131 / NCIMB 11718 / AM63) OX=324831 GN=engB PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 1.025e-12 Identity = 34/55 (61.82%), Postives = 43/55 (78.18%), Query Frame = 1
Query: 310 VVQADYVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSIVRRKKLALTSKKPG 474
VV ++V S+V + P D LPEFAL GRSNVGKSSL+N+IV R+KLA TS++PG
Sbjct: 3 VVDTEFVISAVSEKQYPKDDLPEFALAGRSNVGKSSLINTIVNRRKLARTSQQPG 57
BLAST of rna-TanjilR_24203 vs. DB:Swiss
Match: ENGB_BACV8 (Probable GTP-binding protein EngB OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / JCM 5826 / NBRC 14291 / NCTC 11154) OX=435590 GN=engB PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 1.063e-12 Identity = 30/55 (54.55%), Postives = 42/55 (76.36%), Query Frame = 1
Query: 310 VVQADYVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSIVRRKKLALTSKKPG 474
++ A++V S+ + E CP D LPE+A +GRSNVGKSSL+N + +R KLA+TS PG
Sbjct: 3 ILSAEFVVSNTKVEKCPQDNLPEYAFIGRSNVGKSSLINMLAKRPKLAMTSSTPG 57
BLAST of rna-TanjilR_24203 vs. DB:Swiss
Match: ENGB_BACP2 (Probable GTP-binding protein EngB OS=Bacillus pumilus (strain SAFR-032) OX=315750 GN=engB PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 6.976e-12 Identity = 34/55 (61.82%), Postives = 41/55 (74.55%), Query Frame = 1
Query: 310 VVQADYVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSIVRRKKLALTSKKPG 474
V ++D V S+V+ E PS GLPE AL GRSNVGKSS +NS++ RK LA TS KPG
Sbjct: 3 VTKSDIVISAVKPEQYPSGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPG 57
BLAST of rna-TanjilR_24203 vs. DB:Swiss
Match: ENGB_SYMTH (Probable GTP-binding protein EngB OS=Symbiobacterium thermophilum (strain T / IAM 14863) OX=292459 GN=engB PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.010e-11 Identity = 34/54 (62.96%), Postives = 41/54 (75.93%), Query Frame = 1
Query: 313 VQADYVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSIVRRKKLALTSKKPG 474
V A++V S+V P DGLPE ALVGRSNVGKSSL+N++VR +KLA TS PG
Sbjct: 3 VHAEFVLSAVAQGQFPQDGLPEVALVGRSNVGKSSLINALVRNRKLARTSNTPG 56
BLAST of rna-TanjilR_24203 vs. DB:Swiss
Match: ENGB_GEOSW (Probable GTP-binding protein EngB OS=Geobacillus sp. (strain WCH70) OX=471223 GN=engB PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 2.825e-11 Identity = 32/56 (57.14%), Postives = 39/56 (69.64%), Query Frame = 1
Query: 307 NVVQADYVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSIVRRKKLALTSKKPG 474
NV +A+ S+V+ E P LPEFAL GRSNVGKSS +N ++ RK LA TS KPG
Sbjct: 2 NVTKAEIAVSAVKPEQYPDGALPEFALAGRSNVGKSSFINKMINRKNLARTSSKPG 57
BLAST of rna-TanjilR_24203 vs. DB:Swiss
Match: ENGB_LACAC (Probable GTP-binding protein EngB OS=Lactobacillus acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM) OX=272621 GN=engB PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 4.139e-11 Identity = 30/52 (57.69%), Postives = 40/52 (76.92%), Query Frame = 1
Query: 319 ADYVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSIVRRKKLALTSKKPG 474
++Y S+V+ E P D LPE AL GRSNVGKSSL+N++++RK LA TS +PG
Sbjct: 6 SEYAVSAVKEEQYPKDNLPEIALAGRSNVGKSSLINTLLKRKNLARTSSQPG 57
BLAST of rna-TanjilR_24203 vs. DB:Swiss
Match: ENGB_ANASK (Probable GTP-binding protein EngB OS=Anaeromyxobacter sp. (strain K) OX=447217 GN=engB PE=3 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 6.685e-11 Identity = 31/56 (55.36%), Postives = 38/56 (67.86%), Query Frame = 1
Query: 307 NVVQADYVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSIVRRKKLALTSKKPG 474
VV AD+ K++ R E+ P PE A VGRSNVGKSS+LN++ RRK LA S PG
Sbjct: 4 QVVSADFAKTATRPEEWPRGATPEIAFVGRSNVGKSSMLNALARRKGLARVSSTPG 59
BLAST of rna-TanjilR_24203 vs. DB:Swiss
Match: ENGB_ANAD2 (Probable GTP-binding protein EngB OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) OX=455488 GN=engB PE=3 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 6.685e-11 Identity = 31/56 (55.36%), Postives = 38/56 (67.86%), Query Frame = 1
Query: 307 NVVQADYVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSIVRRKKLALTSKKPG 474
VV AD+ K++ R E+ P PE A VGRSNVGKSS+LN++ RRK LA S PG
Sbjct: 4 QVVSADFAKTATRPEEWPRGATPEIAFVGRSNVGKSSMLNALARRKGLARVSSTPG 59
BLAST of rna-TanjilR_24203 vs. DB:Swiss
Match: ENGB_CHLT3 (Probable GTP-binding protein EngB OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) OX=517418 GN=engB PE=3 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 8.049e-11 Identity = 33/61 (54.10%), Postives = 40/61 (65.57%), Query Frame = 1
Query: 319 ADYVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSIVRRKKLALTSKKPGP--EPNPFC 495
A++ KS R ED P DGLPE A GRSNVGKSSL+N+++ +K LA S PG E N F
Sbjct: 6 AEFYKSVTRLEDLPKDGLPEIAFAGRSNVGKSSLMNTLMGKKDLARASATPGKTREINFFL 66 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_24203 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_24203_La_Tanjil_v1.0 ID=rna-TanjilR_24203_La_Tanjil_v1.0; Name=rna-TanjilR_24203; organism=Lupinus angustifolius; type=mRNA; length=2522bpback to top protein sequence of rna-TanjilR_24203_La_Tanjil_v1.0 >rna-TanjilR_24203_La_Tanjil_v1.0 ID=rna-TanjilR_24203_La_Tanjil_v1.0; Name=rna-TanjilR_24203_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=307bpback to top mRNA from alignment at Chr_LG15-CM007375.1:18892210..18894731+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_24203_La_Tanjil_v1.0 ID=rna-TanjilR_24203_La_Tanjil_v1.0; Name=rna-TanjilR_24203; organism=Lupinus angustifolius; type=mRNA; length=2522bp; location=Sequence derived from: Chr_LG15-CM007375.1:18892210..18894731+ (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG15-CM007375.1:18892210..18894731+ >rna-TanjilR_24203_La_Tanjil_v1.0 ID=rna-TanjilR_24203_La_Tanjil_v1.0; Name=rna-TanjilR_24203; organism=Lupinus angustifolius; type=CDS; length=924bp; location=Sequence derived from: Chr_LG15-CM007375.1:18892210..18894731+ (Lupinus angustifoliusback to top |