rna-TanjilR_09820

Transcript Overview
Namerna-TanjilR_09820
Unique Namerna-TanjilR_09820_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length1212
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG15-CM007375.1supercontigChr_LG15-CM007375.1:20045919..20047130 -Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananL262Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR293Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR302Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiR0442Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR0460Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaR0375Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR0383Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
anccR0476Cajanus cajan Asha genome v1.0Cajanus cajan
ancrR0427Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ancrR0443Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
anpsR0326Pisum sativum Cameor genome v1aPisum sativum
anpvR0407Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR0448Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anvuR0368Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR0370Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anasR0422Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR0448Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anzwsR0372Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anzwsR0397Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
antifR0379Vicia faba cv. Tiffany genome v1.0Vicia faba
antifR0389Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR0379Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
anvfhR0390Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
anvrvR0360Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvrvR0381Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvuaR0336Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvuaR0351Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvssR0428Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR0439Vicia sativa cv. Studenica genome v1.0Vicia sativa
ancanR0334Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR0342Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
anavjR0396Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0421Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
ancarR0371Cicer arietinum
ancarR0383Cicer arietinum
anccaR0336Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR0414Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR0428Vigna umbellata FF25 genome v1.0Vigna umbellata
anvvaR0394Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvvaR0420Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvasR0423Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0424Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0435Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0435Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvunR0349Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anvunR0351Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anpvfR0463Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris

Orthologs
Gene/TranscriptAssemblySpecies
PvulFLAVERTChr09.556Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Psat05G0133100-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
XM_058927141.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
evm.model.Chr09.1449Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vum_02G00459.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Vfaba.Tiffany.R1.2g137600.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Va04G066790.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vigun09g229600.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vfaba.Hedin2.R1.2g171120.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Cc_v2.0_07169.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Vigst.02G044800.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
jg55077.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
LR48_mrnaVigan04g240500Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vigan.02G054900.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
rna-XM_027334983.1Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Phvul.009G073500.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Cr_02844.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
rna-XM_014643344.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Ca_14837.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Ca_01605Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Vigun09g229600.4Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-TanjilR_30638Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_09820gene-TanjilG_09820_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_09820rna-TanjilR_09820_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_09820_La_Tanjil_v1.0rna-TanjilR_09820_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_09820_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20045919..20047130rna-TanjilR_09820_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20045919..20047130Lupinus angustifoliusCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_09820_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20045919..20047130rna-TanjilR_09820_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20045919..20047130Lupinus angustifoliusexon


Homology
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BLAST of rna-TanjilR_09820 vs. DB:Swiss
Match: P2A10_ARATH (Protein PHLOEM PROTEIN 2-LIKE A10 OS=Arabidopsis thaliana OX=3702 GN=PP2A10 PE=2 SV=1)

HSP 1 Score: 365.54 bits (937), Expect = 5.148e-123
Identity = 179/394 (45.43%), Postives = 270/394 (68.53%), Query Frame = 1 
Query:   16 FSRRNKKSLLLIALFGTSSYGAYQVYNLPSVVLKRNRVAKLLKGFISLVELISDSAETVSLLTKDLNQFVTSDSNEIPQSLKQLSKIATSKEVSVSLSRTSEALTIGILQGHKLHIKINNQS--EIGTENFPNKLLEKVFSKAGTGFVSVVVGRFARNLALGLRAESIDDKINVAKARSEGLDNPRWLSLICDERVRKLIGDCIQTFVSTSVTVFLDKTMHINNFDEMFAGLTNPKHQEKVKDILISLNNGAIETLIKTVHQVLTNKTARSKLSS-PVSSFKCEGPEAFLQQYKPGSSISAIQDAGLLERVRSTMSVPDNRRFVLDVIRKVTFDTMRSFLEFLLRRISDGFKRSVSKVHDVVVDRGLEIVRYVGAKSSVILTMCLALYLHIVGG 1188
             S+R +K L+ +A+ G S YGAY+VY+LPSV  KR R+ KL    +S+ ELISDSAET+S++++D+  F+ SDS+EIP SLKQ++KI TS E + SLSR S+A+TIG  +G+K    I +    +    +  +++++KVFS+AGTGFVSVVVG FA+NL LG  +  ++  +    + S   + PRW++L+ D++ R+L+ DCI+ F ST++ V+LDKTM IN +D++F GLTNPKHQ+ VKD+L+S+ NGA+ET+++T H V T+  +++ +       FK  G        + G     ++  G  E + +T++VP NRRF+ DV  +VT +T RS + F++ +   GF++S++ VH+ V DRG + V YVGAKSSVI+T+CLALYLHI+ G
Sbjct:   13 LSQRRRKWLIFMAISGVSGYGAYKVYHLPSVARKRKRLFKLFGAIVSVAELISDSAETLSMVSRDVKDFLNSDSDEIPNSLKQIAKITTSNEFTDSLSRVSQAVTIGAFRGYKSESSIGDSGIEKSSDSSVVDRVIDKVFSEAGTGFVSVVVGSFAKNLVLGFYSGKVESGVKCEGSDSS--ETPRWVTLLGDDKCRELLADCIERFTSTAIGVYLDKTMDINTYDQIFEGLTNPKHQDSVKDVLVSVCNGALETIVRTSHDVFTSSRSKNVIEEIEDDDFKSNGSARSKMVSESG---DGVKSNGWTEAIATTLAVPSNRRFMFDVTGRVTLETTRSIIAFIMVKTFQGFRKSINVVHEEVTDRGRQAVEYVGAKSSVIITVCLALYLHIISG 401
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_09820 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
P2A10_ARATH5.148e-12345.43Protein PHLOEM PROTEIN 2-LIKE A10 OS=Arabidopsis t... [more]
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Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_09820_La_Tanjil_v1.0 ID=rna-TanjilR_09820_La_Tanjil_v1.0; Name=rna-TanjilR_09820; organism=Lupinus angustifolius; type=mRNA; length=1212bp
ATGGACCTGTTTGATTTCTCTCGGAGAAACAAAAAATCACTTCTCTTAAT
TGCTTTATTCGGTACCTCTAGTTATGGCGCTTATCAGGTTTATAATTTAC
CTTCTGTGGTTCTAAAGAGGAACCGCGTCGCTAAGCTTCTCAAAGGATTC
ATTTCTCTTGTAGAATTGATTTCCGATTCTGCAGAAACAGTTTCCCTTCT
CACCAAAGATTTGAACCAATTCGTCACTTCTGATTCCAACGAAATCCCCC
AAAGTTTGAAACAGTTATCGAAAATTGCTACGTCGAAAGAGGTTTCTGTG
TCCTTATCTAGGACTTCAGAAGCTCTAACCATTGGAATTTTGCAAGGGCA
TAAGCTCCATATAAAGATCAATAATCAATCTGAAATTGGCACGGAAAATT
TTCCGAATAAGCTATTGGAAAAGGTTTTCTCCAAAGCCGGAACCGGTTTT
GTATCGGTTGTGGTAGGAAGATTTGCTAGGAATCTAGCTTTAGGTTTACG
TGCTGAGTCTATTGATGATAAAATCAATGTTGCAAAGGCACGATCAGAGG
GTTTGGATAATCCTCGTTGGTTGAGTTTGATTTGTGATGAAAGGGTTAGA
AAACTAATAGGGGATTGTATTCAAACTTTTGTAAGCACTTCAGTTACGGT
TTTTCTGGATAAAACAATGCATATTAATAATTTCGATGAAATGTTTGCTG
GATTGACTAATCCCAAACACCAGGAAAAGGTTAAGGATATTCTGATTTCG
TTAAACAATGGTGCTATTGAAACTCTTATTAAAACAGTTCACCAAGTGTT
GACAAACAAGACTGCGAGATCGAAATTGAGTTCACCTGTCTCTTCTTTTA
AGTGTGAAGGTCCAGAAGCATTTCTTCAGCAATATAAACCTGGAAGTTCG
ATTAGTGCGATTCAGGATGCTGGATTGCTCGAACGGGTTAGATCAACAAT
GTCGGTGCCGGACAATCGAAGGTTTGTGCTTGATGTGATTAGGAAGGTGA
CATTTGATACAATGAGGTCGTTTCTGGAGTTTTTGTTAAGGAGAATATCA
GATGGTTTCAAAAGGAGTGTGAGTAAAGTTCATGATGTGGTTGTGGATAG
AGGACTTGAAATTGTTAGATATGTTGGAGCTAAGTCTTCAGTTATTCTTA
CAATGTGTCTTGCTTTGTATTTACATATTGTGGGTGGTAGTAGTATTCTC
ATGCCAGCATAA
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protein sequence of rna-TanjilR_09820_La_Tanjil_v1.0

>rna-TanjilR_09820_La_Tanjil_v1.0 ID=rna-TanjilR_09820_La_Tanjil_v1.0; Name=rna-TanjilR_09820_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=403bp
MDLFDFSRRNKKSLLLIALFGTSSYGAYQVYNLPSVVLKRNRVAKLLKGF
ISLVELISDSAETVSLLTKDLNQFVTSDSNEIPQSLKQLSKIATSKEVSV
SLSRTSEALTIGILQGHKLHIKINNQSEIGTENFPNKLLEKVFSKAGTGF
VSVVVGRFARNLALGLRAESIDDKINVAKARSEGLDNPRWLSLICDERVR
KLIGDCIQTFVSTSVTVFLDKTMHINNFDEMFAGLTNPKHQEKVKDILIS
LNNGAIETLIKTVHQVLTNKTARSKLSSPVSSFKCEGPEAFLQQYKPGSS
ISAIQDAGLLERVRSTMSVPDNRRFVLDVIRKVTFDTMRSFLEFLLRRIS
DGFKRSVSKVHDVVVDRGLEIVRYVGAKSSVILTMCLALYLHIVGGSSIL
MPA
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mRNA from alignment at Chr_LG15-CM007375.1:20045919..20047130-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_09820_La_Tanjil_v1.0 ID=rna-TanjilR_09820_La_Tanjil_v1.0; Name=rna-TanjilR_09820; organism=Lupinus angustifolius; type=mRNA; length=1212bp; location=Sequence derived from: Chr_LG15-CM007375.1:20045919..20047130- (Lupinus angustifolius
ATGGACCTGTTTGATTTCTCTCGGAGAAACAAAAAATCACTTCTCTTAAT
TGCTTTATTCGGTACCTCTAGTTATGGCGCTTATCAGGTTTATAATTTAC
CTTCTGTGGTTCTAAAGAGGAACCGCGTCGCTAAGCTTCTCAAAGGATTC
ATTTCTCTTGTAGAATTGATTTCCGATTCTGCAGAAACAGTTTCCCTTCT
CACCAAAGATTTGAACCAATTCGTCACTTCTGATTCCAACGAAATCCCCC
AAAGTTTGAAACAGTTATCGAAAATTGCTACGTCGAAAGAGGTTTCTGTG
TCCTTATCTAGGACTTCAGAAGCTCTAACCATTGGAATTTTGCAAGGGCA
TAAGCTCCATATAAAGATCAATAATCAATCTGAAATTGGCACGGAAAATT
TTCCGAATAAGCTATTGGAAAAGGTTTTCTCCAAAGCCGGAACCGGTTTT
GTATCGGTTGTGGTAGGAAGATTTGCTAGGAATCTAGCTTTAGGTTTACG
TGCTGAGTCTATTGATGATAAAATCAATGTTGCAAAGGCACGATCAGAGG
GTTTGGATAATCCTCGTTGGTTGAGTTTGATTTGTGATGAAAGGGTTAGA
AAACTAATAGGGGATTGTATTCAAACTTTTGTAAGCACTTCAGTTACGGT
TTTTCTGGATAAAACAATGCATATTAATAATTTCGATGAAATGTTTGCTG
GATTGACTAATCCCAAACACCAGGAAAAGGTTAAGGATATTCTGATTTCG
TTAAACAATGGTGCTATTGAAACTCTTATTAAAACAGTTCACCAAGTGTT
GACAAACAAGACTGCGAGATCGAAATTGAGTTCACCTGTCTCTTCTTTTA
AGTGTGAAGGTCCAGAAGCATTTCTTCAGCAATATAAACCTGGAAGTTCG
ATTAGTGCGATTCAGGATGCTGGATTGCTCGAACGGGTTAGATCAACAAT
GTCGGTGCCGGACAATCGAAGGTTTGTGCTTGATGTGATTAGGAAGGTGA
CATTTGATACAATGAGGTCGTTTCTGGAGTTTTTGTTAAGGAGAATATCA
GATGGTTTCAAAAGGAGTGTGAGTAAAGTTCATGATGTGGTTGTGGATAG
AGGACTTGAAATTGTTAGATATGTTGGAGCTAAGTCTTCAGTTATTCTTA
CAATGTGTCTTGCTTTGTATTTACATATTGTGGGTGGTAGTAGTATTCTC
ATGCCAGCATAA
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Coding sequence (CDS) from alignment at Chr_LG15-CM007375.1:20045919..20047130-

>rna-TanjilR_09820_La_Tanjil_v1.0 ID=rna-TanjilR_09820_La_Tanjil_v1.0; Name=rna-TanjilR_09820; organism=Lupinus angustifolius; type=CDS; length=1212bp; location=Sequence derived from: Chr_LG15-CM007375.1:20045919..20047130- (Lupinus angustifolius
ATGGACCTGTTTGATTTCTCTCGGAGAAACAAAAAATCACTTCTCTTAAT
TGCTTTATTCGGTACCTCTAGTTATGGCGCTTATCAGGTTTATAATTTAC
CTTCTGTGGTTCTAAAGAGGAACCGCGTCGCTAAGCTTCTCAAAGGATTC
ATTTCTCTTGTAGAATTGATTTCCGATTCTGCAGAAACAGTTTCCCTTCT
CACCAAAGATTTGAACCAATTCGTCACTTCTGATTCCAACGAAATCCCCC
AAAGTTTGAAACAGTTATCGAAAATTGCTACGTCGAAAGAGGTTTCTGTG
TCCTTATCTAGGACTTCAGAAGCTCTAACCATTGGAATTTTGCAAGGGCA
TAAGCTCCATATAAAGATCAATAATCAATCTGAAATTGGCACGGAAAATT
TTCCGAATAAGCTATTGGAAAAGGTTTTCTCCAAAGCCGGAACCGGTTTT
GTATCGGTTGTGGTAGGAAGATTTGCTAGGAATCTAGCTTTAGGTTTACG
TGCTGAGTCTATTGATGATAAAATCAATGTTGCAAAGGCACGATCAGAGG
GTTTGGATAATCCTCGTTGGTTGAGTTTGATTTGTGATGAAAGGGTTAGA
AAACTAATAGGGGATTGTATTCAAACTTTTGTAAGCACTTCAGTTACGGT
TTTTCTGGATAAAACAATGCATATTAATAATTTCGATGAAATGTTTGCTG
GATTGACTAATCCCAAACACCAGGAAAAGGTTAAGGATATTCTGATTTCG
TTAAACAATGGTGCTATTGAAACTCTTATTAAAACAGTTCACCAAGTGTT
GACAAACAAGACTGCGAGATCGAAATTGAGTTCACCTGTCTCTTCTTTTA
AGTGTGAAGGTCCAGAAGCATTTCTTCAGCAATATAAACCTGGAAGTTCG
ATTAGTGCGATTCAGGATGCTGGATTGCTCGAACGGGTTAGATCAACAAT
GTCGGTGCCGGACAATCGAAGGTTTGTGCTTGATGTGATTAGGAAGGTGA
CATTTGATACAATGAGGTCGTTTCTGGAGTTTTTGTTAAGGAGAATATCA
GATGGTTTCAAAAGGAGTGTGAGTAAAGTTCATGATGTGGTTGTGGATAG
AGGACTTGAAATTGTTAGATATGTTGGAGCTAAGTCTTCAGTTATTCTTA
CAATGTGTCTTGCTTTGTATTTACATATTGTGGGTGGTAGTAGTATTCTC
ATGCCAGCATAA
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