rna-TanjilR_09797

Transcript Overview
Namerna-TanjilR_09797
Unique Namerna-TanjilR_09797_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length403
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG15-CM007375.1supercontigChr_LG15-CM007375.1:20182413..20182815 +Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananL262Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL266Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR293Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR294Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR302Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR304Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaR0382Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR0383Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR0387Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR0395Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancrR0421Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ancrR0429Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ancrR0443Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
anpsR0332Pisum sativum Cameor genome v1aPisum sativum
anpsR0344Pisum sativum Cameor genome v1aPisum sativum
anpsR0348Pisum sativum Cameor genome v1aPisum sativum
anpvR0403Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR0407Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR0445Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR0453Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anvuR0362Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR0368Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR0370Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR0372Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR0383Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anasR0416Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR0422Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR0438Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR0448Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR0457Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anzwsR0372Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anzwsR0377Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anzwsR0387Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anzwsR0393Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anzwsR0397Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anvrvR0358Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvrvR0360Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvrvR0369Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvrvR0381Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvrvR0389Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvuaR0336Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvuaR0347Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvuaR0353Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvssR0416Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR0426Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR0428Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR0433Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR0439Vicia sativa cv. Studenica genome v1.0Vicia sativa
ancanR0334Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR0341Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR0342Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR0346Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR0356Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
anavjR0396Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0398Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0409Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0421Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0431Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
ancarR0371Cicer arietinum
ancarR0373Cicer arietinum
ancarR0380Cicer arietinum
ancarR0389Cicer arietinum
anccaR0336Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR0344Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR0360Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR0364Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvvaR0394Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvvaR0398Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvvaR0410Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvvaR0420Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvvaR0426Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvasR0411Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0415Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0425Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvasR0435Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0426Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0445Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0435Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvstR0443Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anpvfR0416Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anpvfR0423Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anvunR0342Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anvunR0349Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anvunR0351Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anpvfR0457Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anvunR0353Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anvunR0365Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anpvfR0469Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris

Orthologs
Gene/TranscriptAssemblySpecies
rna-XM_004501477.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
XM_058925180.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Psat05G0138900-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
LR48_mrnaVigan04g243800Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vigun09g233000.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Ca_01580Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Cr_02818.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Phvul.009G070166.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Va04G067150.2Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Cc_v2.0_07215.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Psat5g038360.1Pisum sativum Cameor genome v1aPisum sativum
evm.model.Chr09.1418Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vigun09g233000.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Vigan.02G051200.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
rna-XM_014646953.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
PvulFLAVERTChr09.528Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
jg55013.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vigst.02G041800.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_09797gene-TanjilG_09797_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_09797rna-TanjilR_09797_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_09797_La_Tanjil_v1.0rna-TanjilR_09797_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_09797_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20182413..20182443rna-TanjilR_09797_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20182413..20182443Lupinus angustifoliusexon
rna-TanjilR_09797_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20182652..20182815rna-TanjilR_09797_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20182652..20182815Lupinus angustifoliusexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_09797_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20182413..20182443rna-TanjilR_09797_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20182413..20182443Lupinus angustifoliusCDS
rna-TanjilR_09797_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20182652..20182815rna-TanjilR_09797_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20182652..20182815Lupinus angustifoliusCDS


Homology
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_09797 vs.
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 59..64

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_09797_La_Tanjil_v1.0 ID=rna-TanjilR_09797_La_Tanjil_v1.0; Name=rna-TanjilR_09797; organism=Lupinus angustifolius; type=mRNA; length=403bp
ATGCCATTGAACTTCTTGGGTCTTGGTGCAGGTATAATACTCATAAATCT
TGCTTCCTTGTCTGTTTCTTAGTTTTAATTCAGTATTTAATGGCAATAGC
TATTGTGTGGGTAGGCTTTCTTTCGAAGCTTTTATCTTACAGGATAAAAT
CAATTGTACATGACTTTATAGTAATACCATTGTTAATATTAATCCTTCTG
GTTTTGGTTATTGGtattatattgtatatgatTTTGAAGGTGGAGGTTGT
GGCGTTGGAGTAGGACTTGGTTGGGGGTTTGGTACTGCTTATGGCAGCAA
GTATAGGTCATCACGGATCACTTTTCAAGGGGTGGAATTTGACAATAAGG
AGAAAGGTAACATCAATGAGTTCTCTAAACCCAGCCCACAAGTAAAAAGT
TGA
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protein sequence of rna-TanjilR_09797_La_Tanjil_v1.0

>rna-TanjilR_09797_La_Tanjil_v1.0 ID=rna-TanjilR_09797_La_Tanjil_v1.0; Name=rna-TanjilR_09797_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=64bp
MPLNFLGLGAGGGCGVGVGLGWGFGTAYGSKYRSSRITFQGVEFDNKEKG
NINEFSKPSPQVKS
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mRNA from alignment at Chr_LG15-CM007375.1:20182413..20182815+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_09797_La_Tanjil_v1.0 ID=rna-TanjilR_09797_La_Tanjil_v1.0; Name=rna-TanjilR_09797; organism=Lupinus angustifolius; type=mRNA; length=403bp; location=Sequence derived from: Chr_LG15-CM007375.1:20182413..20182815+ (Lupinus angustifolius
ATGCCATTGAACTTCTTGGGTCTTGGTGCAGGTATAATACTCATAAATCT
TGCTTCCTTGTCTGTTTCTTAGTTTTAATTCAGTATTTAATGGCAATAGC
TATTGTGTGGGTAGGCTTTCTTTCGAAGCTTTTATCTTACAGGATAAAAT
CAATTGTACATGACTTTATAGTAATACCATTGTTAATATTAATCCTTCTG
GTTTTGGTTATTGGtattatattgtatatgatTTTGAAGGTGGAGGTTGT
GGCGTTGGAGTAGGACTTGGTTGGGGGTTTGGTACTGCTTATGGCAGCAA
GTATAGGTCATCACGGATCACTTTTCAAGGGGTGGAATTTGACAATAAGG
AGAAAGGTAACATCAATGAGTTCTCTAAACCCAGCCCACAAGTAAAAAGT
TGA
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Coding sequence (CDS) from alignment at Chr_LG15-CM007375.1:20182413..20182815+

>rna-TanjilR_09797_La_Tanjil_v1.0 ID=rna-TanjilR_09797_La_Tanjil_v1.0; Name=rna-TanjilR_09797; organism=Lupinus angustifolius; type=CDS; length=195bp; location=Sequence derived from: Chr_LG15-CM007375.1:20182413..20182815+ (Lupinus angustifolius
ATGCCATTGAACTTCTTGGGTCTTGGTGCAGGTGGAGGTTGTGGCGTTGG
AGTAGGACTTGGTTGGGGGTTTGGTACTGCTTATGGCAGCAAGTATAGGT
CATCACGGATCACTTTTCAAGGGGTGGAATTTGACAATAAGGAGAAAGGT
AACATCAATGAGTTCTCTAAACCCAGCCCACAAGTAAAAAGTTGA
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