rna-TanjilR_09779
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_09779 vs. DB:Swiss
Match: MYB73_ARATH (Transcription factor MYB73 OS=Arabidopsis thaliana OX=3702 GN=MYB73 PE=1 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 7.265e-56 Identity = 102/176 (57.95%), Postives = 116/176 (65.91%), Query Frame = 1 Query: 82 NPTRN--ERIKGPWSAEEDRILTQLVERHGPRNWSLISRYIKGRSGKSCRLRWCNQLSPAVEHRPFSVKEDETIIAAHAHYGNRWATIARLLPGRTDNAVKNHWNSTLNRR-PMEQQRGSFDAITTTIGERGISLSGPVLVEEDPLTALTLAPPGIDNGGGVEEARISPEEGVPSG 600 NPTR ERIKGPWS EED +L +LV++HGPRNWSLIS+ I GRSGKSCRLRWCNQLSP VEHR FS +EDETII AHA +GN+WATI+RLL GRTDNA+KNHWNSTL R+ +E Q F G G EE PL G+ G +SP G PSG Sbjct: 3 NPTRKNMERIKGPWSPEEDDLLQRLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPEVEHRAFSQEEDETIIRAHARFGNKWATISRLLNGRTDNAIKNHWNSTLKRKCSVEGQSCDFGGNGGYDGNLG---------EEQPLKRTASGGGGVSTG-----LYMSP--GSPSG 162
BLAST of rna-TanjilR_09779 vs. DB:Swiss
Match: MYB77_ARATH (Transcription factor MYB77 OS=Arabidopsis thaliana OX=3702 GN=MYB77 PE=1 SV=1) HSP 1 Score: 175.252 bits (443), Expect = 9.814e-53 Identity = 78/104 (75.00%), Postives = 90/104 (86.54%), Query Frame = 1 Query: 97 ERIKGPWSAEEDRILTQLVERHGPRNWSLISRYIKGRSGKSCRLRWCNQLSPAVEHRPFSVKEDETIIAAHAHYGNRWATIARLLPGRTDNAVKNHWNSTLNRR 408 +R+KGPWS EED L ++VE++GPRNWS IS+ I GRSGKSCRLRWCNQLSP VEHRPFS +EDETI+ A A +GN+WATIARLL GRTDNAVKNHWNSTL R+ Sbjct: 3 DRVKGPWSQEEDEQLRRMVEKYGPRNWSAISKSIPGRSGKSCRLRWCNQLSPEVEHRPFSPEEDETIVTARAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRK 106
BLAST of rna-TanjilR_09779 vs. DB:Swiss
Match: MYB44_ARATH (Transcription factor MYB44 OS=Arabidopsis thaliana OX=3702 GN=MYB44 PE=1 SV=1) HSP 1 Score: 173.711 bits (439), Expect = 5.390e-52 Identity = 79/104 (75.96%), Postives = 90/104 (86.54%), Query Frame = 1 Query: 97 ERIKGPWSAEEDRILTQLVERHGPRNWSLISRYIKGRSGKSCRLRWCNQLSPAVEHRPFSVKEDETIIAAHAHYGNRWATIARLLPGRTDNAVKNHWNSTLNRR 408 +RIKGPWS EED L +LV ++GPRNW++IS+ I GRSGKSCRLRWCNQLSP VEHRPFS +EDETI AHA +GN+WATIARLL GRTDNAVKNHWNSTL R+ Sbjct: 3 DRIKGPWSPEEDEQLRRLVVKYGPRNWTVISKSIPGRSGKSCRLRWCNQLSPQVEHRPFSAEEDETIARAHAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRK 106
BLAST of rna-TanjilR_09779 vs. DB:Swiss
Match: MYB1_ARATH (Transcription factor MYB1 OS=Arabidopsis thaliana OX=3702 GN=MYB1 PE=2 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 6.445e-46 Identity = 84/169 (49.70%), Postives = 113/169 (66.86%), Query Frame = 1 Query: 91 RNERIKGPWSAEEDRILTQLVERHGPRNWSLISRYIKGRSGKSCRLRWCNQLSPAVEHRPFSVKEDETIIAAHAHYGNRWATIARLLPGRTDNAVKNHWNSTLNRRPMEQQRGSFDAITTTIGERGISLSGPVLVEE---DPLTALTLAPPGIDNGGG--VEEARISPE 582 R +R+KGPWS EED +L++LV+R G RNWS I+R I GRSGKSCRLRWCNQL+P + F+ ED+ IIAAHA +GN+WA IA+LLPGRTDNA+KNHWNS L RR ++ ++ IG +G ++V++ D T + + + +GGG V +SPE Sbjct: 50 RRDRVKGPWSKEEDDVLSELVKRLGARNWSFIARSIPGRSGKSCRLRWCNQLNPNLIRNSFTEVEDQAIIAAHAIHGNKWAVIAKLLPGRTDNAIKNHWNSALRRRFIDFEKAK------NIG------TGSLVVDDSGFDRTTTVASSEETLSSGGGCHVTTPIVSPE 206
BLAST of rna-TanjilR_09779 vs. DB:Swiss
Match: MYB25_ARATH (Transcription factor MYB25 OS=Arabidopsis thaliana OX=3702 GN=MYB25 PE=2 SV=1) HSP 1 Score: 154.066 bits (388), Expect = 7.947e-44 Identity = 68/107 (63.55%), Postives = 86/107 (80.37%), Query Frame = 1 Query: 100 RIKGPWSAEEDRILTQLVERHGPRNWSLISRYIKGRSGKSCRLRWCNQLSPAVEHRPFSVKEDETIIAAHAHYGNRWATIARLLPGRTDNAVKNHWNSTLNRRPMEQ 420 ++KGPW E+D LT+LV+ GPRNW+LISR I GRSGKSCRLRWCNQL P ++ +PFS +E+ I++A A GN+W+ IA+LLPGRTDNA+KNHWNS L R+P EQ Sbjct: 48 KVKGPWLPEQDEALTRLVKMCGPRNWNLISRGIPGRSGKSCRLRWCNQLDPILKRKPFSDEEEHMIMSAQAVLGNKWSVIAKLLPGRTDNAIKNHWNSNLRRKPAEQ 154
BLAST of rna-TanjilR_09779 vs. DB:Swiss
Match: MYB_XENLA (Transcriptional activator Myb OS=Xenopus laevis OX=8355 GN=myb PE=2 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 3.776e-36 Identity = 63/119 (52.94%), Postives = 86/119 (72.27%), Query Frame = 1 Query: 97 ERIKGPWSAEEDRILTQLVERHGPRNWSLISRYIKGRSGKSCRLRWCNQLSPAVEHRPFSVKEDETIIAAHAHYGNRWATIARLLPGRTDNAVKNHWNSTLNRRPMEQQRGSFDAITTT 453 E IKGPW+ EED+ + +LV ++GP+ WS+I++++KGR GK CR RW N L+P V+ ++ +ED TI AH GNRWA IA+LLPGRTDNA+KNHWNST+ R+ E+Q G + T Sbjct: 86 ELIKGPWTKEEDQRVIELVHKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTEEEDRTIYEAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK--EEQEGYLQNSSKT 202
BLAST of rna-TanjilR_09779 vs. DB:Swiss
Match: MYB_BOVIN (Transcriptional activator Myb OS=Bos taurus OX=9913 GN=MYB PE=2 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 8.714e-36 Identity = 65/127 (51.18%), Postives = 91/127 (71.65%), Query Frame = 1 Query: 97 ERIKGPWSAEEDRILTQLVERHGPRNWSLISRYIKGRSGKSCRLRWCNQLSPAVEHRPFSVKEDETIIAAHAHYGNRWATIARLLPGRTDNAVKNHWNSTLNRRPMEQQ-------RGSFDAITTTI 456 E IKGPW+ EED+ + +LV+++GP+ WS+I++++KGR GK CR RW N L+P V+ ++ +ED I AH GNRWA IA+LLPGRTDNA+KNHWNST+ RR +EQ+ + S A+TT+ Sbjct: 89 ELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTM-RRKVEQEGYLQESSKASQPAVTTSF 214
BLAST of rna-TanjilR_09779 vs. DB:Swiss
Match: MYBA_HUMAN (Myb-related protein A OS=Homo sapiens OX=9606 GN=MYBL1 PE=1 SV=2) HSP 1 Score: 137.117 bits (344), Expect = 9.931e-36 Identity = 63/118 (53.39%), Postives = 87/118 (73.73%), Query Frame = 1 Query: 97 ERIKGPWSAEEDRILTQLVERHGPRNWSLISRYIKGRSGKSCRLRWCNQLSPAVEHRPFSVKEDETIIAAHAHYGNRWATIARLLPGRTDNAVKNHWNSTLNRRPMEQQRGSFDAITT 450 E IKGPW+ EED+ + +LV+++GP+ WSLI++++KGR GK CR RW N L+P V+ ++ +ED I AH GNRWA IA+LLPGRTDN++KNHWNST+ RR +EQ+ D I + Sbjct: 84 ELIKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTEEEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTM-RRKVEQEGYLQDGIKS 200
BLAST of rna-TanjilR_09779 vs. DB:Swiss
Match: CSA_ORYSJ (Transcription factor CSA OS=Oryza sativa subsp. japonica OX=39947 GN=CSA PE=2 SV=2) HSP 1 Score: 132.109 bits (331), Expect = 1.077e-35 Identity = 62/110 (56.36%), Postives = 79/110 (71.82%), Query Frame = 1 Query: 106 KGPWSAEEDRILTQLVERHGPRNWSLISRYIKGRSGKSCRLRWCNQLSPAVEHRPFSVKEDETIIAAHAHYGNRWATIARLLPGRTDNAVKNHWNSTLNRRPMEQQRGSF 435 +G W ED L LV ++GP+NW+LI+ + GRSGKSCRLRW NQL P + R F+ +E+E ++AAH YGN+WA IARL PGRTDNAVKNHW+ + RR EQ G+F Sbjct: 49 RGHWRPAEDAKLKDLVAQYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMAAHRAYGNKWALIARLFPGRTDNAVKNHWHVLMARRHREQS-GAF 157
BLAST of rna-TanjilR_09779 vs. DB:Swiss
Match: MYBA_MOUSE (Myb-related protein A OS=Mus musculus OX=10090 GN=Mybl1 PE=1 SV=2) HSP 1 Score: 136.732 bits (343), Expect = 1.158e-35 Identity = 63/118 (53.39%), Postives = 87/118 (73.73%), Query Frame = 1 Query: 97 ERIKGPWSAEEDRILTQLVERHGPRNWSLISRYIKGRSGKSCRLRWCNQLSPAVEHRPFSVKEDETIIAAHAHYGNRWATIARLLPGRTDNAVKNHWNSTLNRRPMEQQRGSFDAITT 450 E IKGPW+ EED+ + +LV+++GP+ WSLI++++KGR GK CR RW N L+P V+ ++ +ED I AH GNRWA IA+LLPGRTDN++KNHWNST+ RR +EQ+ D I + Sbjct: 84 ELIKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTEEEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTM-RRKVEQEGYLQDGIKS 200 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_09779 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_09779_La_Tanjil_v1.0 ID=rna-TanjilR_09779_La_Tanjil_v1.0; Name=rna-TanjilR_09779; organism=Lupinus angustifolius; type=mRNA; length=693bpback to top protein sequence of rna-TanjilR_09779_La_Tanjil_v1.0 >rna-TanjilR_09779_La_Tanjil_v1.0 ID=rna-TanjilR_09779_La_Tanjil_v1.0; Name=rna-TanjilR_09779_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=230bpback to top mRNA from alignment at Chr_LG15-CM007375.1:20298099..20298791+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_09779_La_Tanjil_v1.0 ID=rna-TanjilR_09779_La_Tanjil_v1.0; Name=rna-TanjilR_09779; organism=Lupinus angustifolius; type=mRNA; length=693bp; location=Sequence derived from: Chr_LG15-CM007375.1:20298099..20298791+ (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG15-CM007375.1:20298099..20298791+ >rna-TanjilR_09779_La_Tanjil_v1.0 ID=rna-TanjilR_09779_La_Tanjil_v1.0; Name=rna-TanjilR_09779; organism=Lupinus angustifolius; type=CDS; length=693bp; location=Sequence derived from: Chr_LG15-CM007375.1:20298099..20298791+ (Lupinus angustifoliusback to top |