rna-TanjilR_09779

Transcript Overview
Namerna-TanjilR_09779
Unique Namerna-TanjilR_09779_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length693
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG15-CM007375.1supercontigChr_LG15-CM007375.1:20298099..20298791 +Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananL079Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL262Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR293Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR294Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiR0428Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR0445Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaR0377Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR0387Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
anccR0504Cajanus cajan Asha genome v1.0Cajanus cajan
ancrR0429Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ancrR0454Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
anpsR0332Pisum sativum Cameor genome v1aPisum sativum
anpvR0410Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR0453Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anvuR0366Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR0372Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anasR0405Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR0416Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anzwsR0377Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anzwsR0398Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
antifR0385Vicia faba cv. Tiffany genome v1.0Vicia faba
antifR0392Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR0385Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
anvfhR0394Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
anvrvR0358Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvrvR0380Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvuaR0334Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvuaR0353Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvssR0426Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR0444Vicia sativa cv. Studenica genome v1.0Vicia sativa
ancanR0338Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR0346Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
anavjR0398Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0421Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0424Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
ancarR0369Cicer arietinum
ancarR0389Cicer arietinum
anccaR0354Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR0364Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR0416Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR0429Vigna umbellata FF25 genome v1.0Vigna umbellata
anvvaR0398Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvvaR0421Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvasR0425Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0426Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0438Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0437Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anpvfR0423Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anvunR0347Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anvunR0353Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anpvfR0469Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris

Orthologs
Gene/TranscriptAssemblySpecies
Va07G067880.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Phvul.001G019200.2Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
evm.model.Chr09.1352Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vigst.02G034700.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Ca_01522Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
rna-XM_014645094.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vum_02G00356.1Vigna umbellata FF25 genome v1.0Vigna umbellata
rna-KK1_019145Cajanus cajan Asha genome v1.0Cajanus cajan
Cc_v2.0_10831.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
rna-XM_004501538.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Vigan.02G041800.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Psat05G0152400-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Phvul.009G062700.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vigun08g020800.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
XM_058925222.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Va04G068440.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vfaba.Tiffany.R1.2g131840.1Vicia faba cv. Tiffany genome v1.0Vicia faba
jg54885.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vigan.03G275500.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
evm.model.Chr08.528Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
LR48_mrnaVigan09g019100Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vigun08g020800.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vigun09g240700.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Ca_15140.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Vum_03G01939.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Psat5g044720.1Pisum sativum Cameor genome v1aPisum sativum
Cr_02766.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Vigst.03G175400.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
rna-XM_014648737.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
LR48_mrnaVigan01g330800Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vigun09g240700.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Vfaba.Hedin2.R1.2g163640.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Cc_v2.0_15279.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-TanjilR_30613Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-TanjilR_30578Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_09779gene-TanjilG_09779_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_09779rna-TanjilR_09779_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_09779_La_Tanjil_v1.0rna-TanjilR_09779_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_09779_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20298099..20298791rna-TanjilR_09779_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20298099..20298791Lupinus angustifoliusexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_09779_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20298099..20298791rna-TanjilR_09779_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20298099..20298791Lupinus angustifoliusCDS


Homology
BLAST of rna-TanjilR_09779 vs. DB:Swiss
Match: MYB73_ARATH (Transcription factor MYB73 OS=Arabidopsis thaliana OX=3702 GN=MYB73 PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 7.265e-56
Identity = 102/176 (57.95%), Postives = 116/176 (65.91%), Query Frame = 1
Query:   82 NPTRN--ERIKGPWSAEEDRILTQLVERHGPRNWSLISRYIKGRSGKSCRLRWCNQLSPAVEHRPFSVKEDETIIAAHAHYGNRWATIARLLPGRTDNAVKNHWNSTLNRR-PMEQQRGSFDAITTTIGERGISLSGPVLVEEDPLTALTLAPPGIDNGGGVEEARISPEEGVPSG 600
            NPTR   ERIKGPWS EED +L +LV++HGPRNWSLIS+ I GRSGKSCRLRWCNQLSP VEHR FS +EDETII AHA +GN+WATI+RLL GRTDNA+KNHWNSTL R+  +E Q   F       G  G         EE PL        G+  G       +SP  G PSG
Sbjct:    3 NPTRKNMERIKGPWSPEEDDLLQRLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPEVEHRAFSQEEDETIIRAHARFGNKWATISRLLNGRTDNAIKNHWNSTLKRKCSVEGQSCDFGGNGGYDGNLG---------EEQPLKRTASGGGGVSTG-----LYMSP--GSPSG 162          
BLAST of rna-TanjilR_09779 vs. DB:Swiss
Match: MYB77_ARATH (Transcription factor MYB77 OS=Arabidopsis thaliana OX=3702 GN=MYB77 PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 9.814e-53
Identity = 78/104 (75.00%), Postives = 90/104 (86.54%), Query Frame = 1
Query:   97 ERIKGPWSAEEDRILTQLVERHGPRNWSLISRYIKGRSGKSCRLRWCNQLSPAVEHRPFSVKEDETIIAAHAHYGNRWATIARLLPGRTDNAVKNHWNSTLNRR 408
            +R+KGPWS EED  L ++VE++GPRNWS IS+ I GRSGKSCRLRWCNQLSP VEHRPFS +EDETI+ A A +GN+WATIARLL GRTDNAVKNHWNSTL R+
Sbjct:    3 DRVKGPWSQEEDEQLRRMVEKYGPRNWSAISKSIPGRSGKSCRLRWCNQLSPEVEHRPFSPEEDETIVTARAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRK 106          
BLAST of rna-TanjilR_09779 vs. DB:Swiss
Match: MYB44_ARATH (Transcription factor MYB44 OS=Arabidopsis thaliana OX=3702 GN=MYB44 PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 5.390e-52
Identity = 79/104 (75.96%), Postives = 90/104 (86.54%), Query Frame = 1
Query:   97 ERIKGPWSAEEDRILTQLVERHGPRNWSLISRYIKGRSGKSCRLRWCNQLSPAVEHRPFSVKEDETIIAAHAHYGNRWATIARLLPGRTDNAVKNHWNSTLNRR 408
            +RIKGPWS EED  L +LV ++GPRNW++IS+ I GRSGKSCRLRWCNQLSP VEHRPFS +EDETI  AHA +GN+WATIARLL GRTDNAVKNHWNSTL R+
Sbjct:    3 DRIKGPWSPEEDEQLRRLVVKYGPRNWTVISKSIPGRSGKSCRLRWCNQLSPQVEHRPFSAEEDETIARAHAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRK 106          
BLAST of rna-TanjilR_09779 vs. DB:Swiss
Match: MYB1_ARATH (Transcription factor MYB1 OS=Arabidopsis thaliana OX=3702 GN=MYB1 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 6.445e-46
Identity = 84/169 (49.70%), Postives = 113/169 (66.86%), Query Frame = 1
Query:   91 RNERIKGPWSAEEDRILTQLVERHGPRNWSLISRYIKGRSGKSCRLRWCNQLSPAVEHRPFSVKEDETIIAAHAHYGNRWATIARLLPGRTDNAVKNHWNSTLNRRPMEQQRGSFDAITTTIGERGISLSGPVLVEE---DPLTALTLAPPGIDNGGG--VEEARISPE 582
            R +R+KGPWS EED +L++LV+R G RNWS I+R I GRSGKSCRLRWCNQL+P +    F+  ED+ IIAAHA +GN+WA IA+LLPGRTDNA+KNHWNS L RR ++ ++         IG      +G ++V++   D  T +  +   + +GGG  V    +SPE
Sbjct:   50 RRDRVKGPWSKEEDDVLSELVKRLGARNWSFIARSIPGRSGKSCRLRWCNQLNPNLIRNSFTEVEDQAIIAAHAIHGNKWAVIAKLLPGRTDNAIKNHWNSALRRRFIDFEKAK------NIG------TGSLVVDDSGFDRTTTVASSEETLSSGGGCHVTTPIVSPE 206          
BLAST of rna-TanjilR_09779 vs. DB:Swiss
Match: MYB25_ARATH (Transcription factor MYB25 OS=Arabidopsis thaliana OX=3702 GN=MYB25 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 7.947e-44
Identity = 68/107 (63.55%), Postives = 86/107 (80.37%), Query Frame = 1
Query:  100 RIKGPWSAEEDRILTQLVERHGPRNWSLISRYIKGRSGKSCRLRWCNQLSPAVEHRPFSVKEDETIIAAHAHYGNRWATIARLLPGRTDNAVKNHWNSTLNRRPMEQ 420
            ++KGPW  E+D  LT+LV+  GPRNW+LISR I GRSGKSCRLRWCNQL P ++ +PFS +E+  I++A A  GN+W+ IA+LLPGRTDNA+KNHWNS L R+P EQ
Sbjct:   48 KVKGPWLPEQDEALTRLVKMCGPRNWNLISRGIPGRSGKSCRLRWCNQLDPILKRKPFSDEEEHMIMSAQAVLGNKWSVIAKLLPGRTDNAIKNHWNSNLRRKPAEQ 154          
BLAST of rna-TanjilR_09779 vs. DB:Swiss
Match: MYB_XENLA (Transcriptional activator Myb OS=Xenopus laevis OX=8355 GN=myb PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 3.776e-36
Identity = 63/119 (52.94%), Postives = 86/119 (72.27%), Query Frame = 1
Query:   97 ERIKGPWSAEEDRILTQLVERHGPRNWSLISRYIKGRSGKSCRLRWCNQLSPAVEHRPFSVKEDETIIAAHAHYGNRWATIARLLPGRTDNAVKNHWNSTLNRRPMEQQRGSFDAITTT 453
            E IKGPW+ EED+ + +LV ++GP+ WS+I++++KGR GK CR RW N L+P V+   ++ +ED TI  AH   GNRWA IA+LLPGRTDNA+KNHWNST+ R+  E+Q G     + T
Sbjct:   86 ELIKGPWTKEEDQRVIELVHKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTEEEDRTIYEAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK--EEQEGYLQNSSKT 202          
BLAST of rna-TanjilR_09779 vs. DB:Swiss
Match: MYB_BOVIN (Transcriptional activator Myb OS=Bos taurus OX=9913 GN=MYB PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 8.714e-36
Identity = 65/127 (51.18%), Postives = 91/127 (71.65%), Query Frame = 1
Query:   97 ERIKGPWSAEEDRILTQLVERHGPRNWSLISRYIKGRSGKSCRLRWCNQLSPAVEHRPFSVKEDETIIAAHAHYGNRWATIARLLPGRTDNAVKNHWNSTLNRRPMEQQ-------RGSFDAITTTI 456
            E IKGPW+ EED+ + +LV+++GP+ WS+I++++KGR GK CR RW N L+P V+   ++ +ED  I  AH   GNRWA IA+LLPGRTDNA+KNHWNST+ RR +EQ+       + S  A+TT+ 
Sbjct:   89 ELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTM-RRKVEQEGYLQESSKASQPAVTTSF 214          
BLAST of rna-TanjilR_09779 vs. DB:Swiss
Match: MYBA_HUMAN (Myb-related protein A OS=Homo sapiens OX=9606 GN=MYBL1 PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 9.931e-36
Identity = 63/118 (53.39%), Postives = 87/118 (73.73%), Query Frame = 1
Query:   97 ERIKGPWSAEEDRILTQLVERHGPRNWSLISRYIKGRSGKSCRLRWCNQLSPAVEHRPFSVKEDETIIAAHAHYGNRWATIARLLPGRTDNAVKNHWNSTLNRRPMEQQRGSFDAITT 450
            E IKGPW+ EED+ + +LV+++GP+ WSLI++++KGR GK CR RW N L+P V+   ++ +ED  I  AH   GNRWA IA+LLPGRTDN++KNHWNST+ RR +EQ+    D I +
Sbjct:   84 ELIKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTEEEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTM-RRKVEQEGYLQDGIKS 200          
BLAST of rna-TanjilR_09779 vs. DB:Swiss
Match: CSA_ORYSJ (Transcription factor CSA OS=Oryza sativa subsp. japonica OX=39947 GN=CSA PE=2 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 1.077e-35
Identity = 62/110 (56.36%), Postives = 79/110 (71.82%), Query Frame = 1
Query:  106 KGPWSAEEDRILTQLVERHGPRNWSLISRYIKGRSGKSCRLRWCNQLSPAVEHRPFSVKEDETIIAAHAHYGNRWATIARLLPGRTDNAVKNHWNSTLNRRPMEQQRGSF 435
            +G W   ED  L  LV ++GP+NW+LI+  + GRSGKSCRLRW NQL P +  R F+ +E+E ++AAH  YGN+WA IARL PGRTDNAVKNHW+  + RR  EQ  G+F
Sbjct:   49 RGHWRPAEDAKLKDLVAQYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMAAHRAYGNKWALIARLFPGRTDNAVKNHWHVLMARRHREQS-GAF 157          
BLAST of rna-TanjilR_09779 vs. DB:Swiss
Match: MYBA_MOUSE (Myb-related protein A OS=Mus musculus OX=10090 GN=Mybl1 PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.158e-35
Identity = 63/118 (53.39%), Postives = 87/118 (73.73%), Query Frame = 1
Query:   97 ERIKGPWSAEEDRILTQLVERHGPRNWSLISRYIKGRSGKSCRLRWCNQLSPAVEHRPFSVKEDETIIAAHAHYGNRWATIARLLPGRTDNAVKNHWNSTLNRRPMEQQRGSFDAITT 450
            E IKGPW+ EED+ + +LV+++GP+ WSLI++++KGR GK CR RW N L+P V+   ++ +ED  I  AH   GNRWA IA+LLPGRTDN++KNHWNST+ RR +EQ+    D I +
Sbjct:   84 ELIKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTEEEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTM-RRKVEQEGYLQDGIKS 200          
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_09779 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
MYB73_ARATH7.265e-5657.95Transcription factor MYB73 OS=Arabidopsis thaliana... [more]
MYB77_ARATH9.814e-5375.00Transcription factor MYB77 OS=Arabidopsis thaliana... [more]
MYB44_ARATH5.390e-5275.96Transcription factor MYB44 OS=Arabidopsis thaliana... [more]
MYB1_ARATH6.445e-4649.70Transcription factor MYB1 OS=Arabidopsis thaliana ... [more]
MYB25_ARATH7.947e-4463.55Transcription factor MYB25 OS=Arabidopsis thaliana... [more]
MYB_XENLA3.776e-3652.94Transcriptional activator Myb OS=Xenopus laevis OX... [more]
MYB_BOVIN8.714e-3651.18Transcriptional activator Myb OS=Bos taurus OX=991... [more]
MYBA_HUMAN9.931e-3653.39Myb-related protein A OS=Homo sapiens OX=9606 GN=M... [more]
CSA_ORYSJ1.077e-3556.36Transcription factor CSA OS=Oryza sativa subsp. ja... [more]
MYBA_MOUSE1.158e-3553.39Myb-related protein A OS=Mus musculus OX=10090 GN=... [more]
back to top
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainSMARTSM00717santcoord: 87..135
e-value: 1.8E-14
score: 64.0
coord: 35..84
e-value: 6.0E-17
score: 72.3
IPR001005SANT/Myb domainPFAMPF00249Myb_DNA-bindingcoord: 36..81
e-value: 3.5E-16
score: 59.1
coord: 90..131
e-value: 1.5E-13
score: 50.7
IPR001005SANT/Myb domainCDDcd00167SANTcoord: 38..80
e-value: 1.17173E-15
score: 66.445
IPR001005SANT/Myb domainCDDcd00167SANTcoord: 90..133
e-value: 1.88322E-11
score: 55.2742
NoneNo IPR availableGENE3D1.10.10.60coord: 35..87
e-value: 2.5E-22
score: 80.5
NoneNo IPR availableGENE3D1.10.10.60coord: 90..147
e-value: 3.1E-19
score: 70.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..39
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
IPR017930Myb domainPROSITEPS51294HTH_MYBcoord: 88..137
score: 19.764
IPR017930Myb domainPROSITEPS51294HTH_MYBcoord: 31..86
score: 26.569
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 34..129

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_09779_La_Tanjil_v1.0 ID=rna-TanjilR_09779_La_Tanjil_v1.0; Name=rna-TanjilR_09779; organism=Lupinus angustifolius; type=mRNA; length=693bp
ATGGAAGCAATGAACAGAAGCTCACCCACCACTACTTCTTcctcatattc
ttcttcttcagaaTCCAACCACGTTCCTAGAAACCCAACCAGGAACGAAA
GAATCAAAGGCCCATGGAGTGCAGAAGAGGACCGTATCCTAACCCAACTT
GTGGAACGACACGGTCCGAGAAACTGGTCTTTAATTAGCCGTTACATAAA
AGGAAGGTCCGGTAAGTCATGCAGGCTACGGTGGTGCAACCAGCTGAGCC
CCGCCGTTGAGCACCGTCCCTTCTCCGTCAAAGAGGACGAAACAATCATA
GCCGCACATGCCCATTACGGTAACAGGTGGGCCACCATTGCACGGTTACT
ACCTGGTCGAACCGATAACGCAGTGAAGAACCATTGGAATTCAACGTTGA
ATCGAAGACCCATGGAACAACAACGTGGTTCATTTGATGCTATAACTACT
ACTATCGGAGAGAGGGGAATTTCTTTGTCGGGACCTGTGCTGGTGGAGGA
GGACCCGTTGACCGCGTTGACTCTTGCTCCGCCGGGGATTGATAATGGTG
GTGGCGTGGAGGAGGCGAGGATTTCGCCGGAAGAGGGTGTGCCGTCGGGG
TTTTGGGATATGATGAGAGATGTTATTAATAGAGAAGTGAGGGAATATGT
TACTTCTAATTTTTCTGATAATAATAATTCGCGTTTtcattga
back to top

protein sequence of rna-TanjilR_09779_La_Tanjil_v1.0

>rna-TanjilR_09779_La_Tanjil_v1.0 ID=rna-TanjilR_09779_La_Tanjil_v1.0; Name=rna-TanjilR_09779_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=230bp
MEAMNRSSPTTTSSSYSSSSESNHVPRNPTRNERIKGPWSAEEDRILTQL
VERHGPRNWSLISRYIKGRSGKSCRLRWCNQLSPAVEHRPFSVKEDETII
AAHAHYGNRWATIARLLPGRTDNAVKNHWNSTLNRRPMEQQRGSFDAITT
TIGERGISLSGPVLVEEDPLTALTLAPPGIDNGGGVEEARISPEEGVPSG
FWDMMRDVINREVREYVTSNFSDNNNSRFH
back to top

mRNA from alignment at Chr_LG15-CM007375.1:20298099..20298791+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_09779_La_Tanjil_v1.0 ID=rna-TanjilR_09779_La_Tanjil_v1.0; Name=rna-TanjilR_09779; organism=Lupinus angustifolius; type=mRNA; length=693bp; location=Sequence derived from: Chr_LG15-CM007375.1:20298099..20298791+ (Lupinus angustifolius
ATGGAAGCAATGAACAGAAGCTCACCCACCACTACTTCTTcctcatattc ttcttcttcagaaTCCAACCACGTTCCTAGAAACCCAACCAGGAACGAAA GAATCAAAGGCCCATGGAGTGCAGAAGAGGACCGTATCCTAACCCAACTT GTGGAACGACACGGTCCGAGAAACTGGTCTTTAATTAGCCGTTACATAAA AGGAAGGTCCGGTAAGTCATGCAGGCTACGGTGGTGCAACCAGCTGAGCC CCGCCGTTGAGCACCGTCCCTTCTCCGTCAAAGAGGACGAAACAATCATA GCCGCACATGCCCATTACGGTAACAGGTGGGCCACCATTGCACGGTTACT ACCTGGTCGAACCGATAACGCAGTGAAGAACCATTGGAATTCAACGTTGA ATCGAAGACCCATGGAACAACAACGTGGTTCATTTGATGCTATAACTACT ACTATCGGAGAGAGGGGAATTTCTTTGTCGGGACCTGTGCTGGTGGAGGA GGACCCGTTGACCGCGTTGACTCTTGCTCCGCCGGGGATTGATAATGGTG GTGGCGTGGAGGAGGCGAGGATTTCGCCGGAAGAGGGTGTGCCGTCGGGG TTTTGGGATATGATGAGAGATGTTATTAATAGAGAAGTGAGGGAATATGT TACTTCTAATTTTTCTGATAATAATAATTCGCGTTTtcattga
back to top

Coding sequence (CDS) from alignment at Chr_LG15-CM007375.1:20298099..20298791+

>rna-TanjilR_09779_La_Tanjil_v1.0 ID=rna-TanjilR_09779_La_Tanjil_v1.0; Name=rna-TanjilR_09779; organism=Lupinus angustifolius; type=CDS; length=693bp; location=Sequence derived from: Chr_LG15-CM007375.1:20298099..20298791+ (Lupinus angustifolius
ATGGAAGCAATGAACAGAAGCTCACCCACCACTACTTCTTcctcatattc
ttcttcttcagaaTCCAACCACGTTCCTAGAAACCCAACCAGGAACGAAA
GAATCAAAGGCCCATGGAGTGCAGAAGAGGACCGTATCCTAACCCAACTT
GTGGAACGACACGGTCCGAGAAACTGGTCTTTAATTAGCCGTTACATAAA
AGGAAGGTCCGGTAAGTCATGCAGGCTACGGTGGTGCAACCAGCTGAGCC
CCGCCGTTGAGCACCGTCCCTTCTCCGTCAAAGAGGACGAAACAATCATA
GCCGCACATGCCCATTACGGTAACAGGTGGGCCACCATTGCACGGTTACT
ACCTGGTCGAACCGATAACGCAGTGAAGAACCATTGGAATTCAACGTTGA
ATCGAAGACCCATGGAACAACAACGTGGTTCATTTGATGCTATAACTACT
ACTATCGGAGAGAGGGGAATTTCTTTGTCGGGACCTGTGCTGGTGGAGGA
GGACCCGTTGACCGCGTTGACTCTTGCTCCGCCGGGGATTGATAATGGTG
GTGGCGTGGAGGAGGCGAGGATTTCGCCGGAAGAGGGTGTGCCGTCGGGG
TTTTGGGATATGATGAGAGATGTTATTAATAGAGAAGTGAGGGAATATGT
TACTTCTAATTTTTCTGATAATAATAATTCGCGTTTtcattga
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR001005SANT/Myb
IPR017930Myb_dom
IPR009057Homeodomain-like_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding