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Transcript Overview
Name | rna-TanjilR_21550 |
Unique Name | rna-TanjilR_21550_La_Tanjil_v1.0 |
Type | mRNA |
Organism | Lupinus angustifolius (blue lupin) |
Sequence length | 2266 |
Product | hypothetical protein |
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
rna-TanjilR_21550 | rna-TanjilR_21550_La_Tanjil_v1.0-protein | Lupinus angustifolius | polypeptide |
rna-TanjilR_21550_La_Tanjil_v1.0 | rna-TanjilR_21550_La_Tanjil_v1.0 | Lupinus angustifolius | polypeptide |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
rna-TanjilR_21550_La_Tanjil_v1.0-CDS-Chr_LG16-CM007376.1_La_Tanjil_v1.0-1579734366:18286146..18286589 | rna-TanjilR_21550_La_Tanjil_v1.0-CDS-Chr_LG16-CM007376.1_La_Tanjil_v1.0-1579734366:18286146..18286589 | Lupinus angustifolius | CDS |
rna-TanjilR_21550_La_Tanjil_v1.0-CDS-Chr_LG16-CM007376.1_La_Tanjil_v1.0-1579734366:18284770..18285940 | rna-TanjilR_21550_La_Tanjil_v1.0-CDS-Chr_LG16-CM007376.1_La_Tanjil_v1.0-1579734366:18284770..18285940 | Lupinus angustifolius | CDS |
rna-TanjilR_21550_La_Tanjil_v1.0-CDS-Chr_LG16-CM007376.1_La_Tanjil_v1.0-1579734366:18284324..18284418 | rna-TanjilR_21550_La_Tanjil_v1.0-CDS-Chr_LG16-CM007376.1_La_Tanjil_v1.0-1579734366:18284324..18284418 | Lupinus angustifolius | CDS |
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
rna-TanjilR_21550_La_Tanjil_v1.0-exon-Chr_LG16-CM007376.1_La_Tanjil_v1.0-1579734366:18286146..18286589 | rna-TanjilR_21550_La_Tanjil_v1.0-exon-Chr_LG16-CM007376.1_La_Tanjil_v1.0-1579734366:18286146..18286589 | Lupinus angustifolius | exon |
rna-TanjilR_21550_La_Tanjil_v1.0-exon-Chr_LG16-CM007376.1_La_Tanjil_v1.0-1579734366:18284770..18285940 | rna-TanjilR_21550_La_Tanjil_v1.0-exon-Chr_LG16-CM007376.1_La_Tanjil_v1.0-1579734366:18284770..18285940 | Lupinus angustifolius | exon |
rna-TanjilR_21550_La_Tanjil_v1.0-exon-Chr_LG16-CM007376.1_La_Tanjil_v1.0-1579734366:18284324..18284418 | rna-TanjilR_21550_La_Tanjil_v1.0-exon-Chr_LG16-CM007376.1_La_Tanjil_v1.0-1579734366:18284324..18284418 | Lupinus angustifolius | exon |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | COILS | Coil | Coil | coord: 96..116 |
None | No IPR available | COILS | Coil | Coil | coord: 24..51 |
None | No IPR available | COILS | Coil | Coil | coord: 312..332 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 543..569 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 410..454 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 189..214 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 490..510 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_21550_La_Tanjil_v1.0 ID=rna-TanjilR_21550_La_Tanjil_v1.0; Name=rna-TanjilR_21550; organism=Lupinus angustifolius; type=mRNA; length=2266bp ATGAATTACCCAAAATCTCAACCTCTTAACCATGAACAAGTTTTGGAAAC TTCTAAAGTTGTTTCATCAAGAAAGCACTATAAGGGAAACCATGATGATC TCAAAATGAAGGTTGATGAACTTGAAAAGCTTTTTGCAGATCATAAACTA CGAATCAATGGTTCTGTAAGGAGAATTGATGCTATTTCATTTGTTAATGT TAATGGTGATGATGATGATTATTATGGTGATGATTGTAGAGGAAAATATT ATGATAAGTATATGAAGAAAAGAGATGCTAAACTTAGAGAAGATTGGAGT ATGAAGAGAGAAGAAAAAGAAGCTAGAATGAAAGCCATGCAAGATAGTTT TGATCAGAATAGTGCTGAGATGAAAGAAAAGTTTTCATGTTCTTATCATG CTCACAAGTTTACATCTCTCAAATCATTTGTTAAGAGAGAACAGGTATTT CTTTATTTGTGTCATGGTGTTTTTGTGATGAATGATTGAATGCAATTCTT TTGTTTCAACGGTTTTAGATTGCAGCCGCGATACCAAAACTTTAACGTAT TGGCGTCTGTCTATAGCGCTCGCTCGTGGACCCAGATTTAAAACCTTGAC AAAACGACATCCTTTTTTGTTCTGATATTAATCCATGTTTTTTCTGTAGT ATCGAATAGATTCTATTCAGAATGAAGATGTTGGTGATGTTTCTGAGTTG TTGGAAGAAAAGATTTATGAACAAGATAGCATAGTTAGTGAATCAACTTT CGGAGATTGTGCTGCAAGGCAAAGCAAGAAGAATTTGCCTAACAAACAAG TGTCTGCAGCCACATCTAGCACAACAAAGCCTTCTTTCGGAATGAGTAAA ACGAACCAATATCGGTTGCGAAACTATGCTCGTAGCAGAAGCACTCTTGA AGGGATGGAAGGTATCAAGGAAGTGAAGCAGAAGCGAACTCAATCTTTAC GAAAAAGTACTTCTGCTAATCCTGCAGAGTTTTATGATTTGGCTCCATTG AAATTTGACATGGAGCAGACTGATCTGAACCATTATGATCGGTCGCGAAG GCCGTTCGCCGAAAAAGGTTATAGTCTAGGCCCGGATGCTAGTGGCGGTG CTACCAGGATGATATCTAGTACCAAGGAAAATGAAGAATTTGATGAGCTT GAACTCGATGTGGAAGATTCTCTTGATATAGCGAAAGAGGAACAGAAAGA AGAGATTGAAACTTTTGCTATAGTAGATCATGTTTACACTAATAATGGAA TGGTGAGGCTGAGCCAAGATTGTGAGAAATCTGTTAATTCTGGTTCCGAA ATCGGTGATTCTACAAGATCTCTTTCTCAAGTAGAACATGCTTTAGTAGC TGAAATGCCTAATGTTATGCACGAGTCGCCGGTTGAAAGCCCTGTGTTAT GGAATTCACATATGCAGCATTCCTTTTCTTACCCGAATGAATCCTCTGAT ATTGATGCTTCTGTAGATTCTCCAAGTGGTAGCCCCGTGTCTCGGAATTC TCGTTCCCTTATCCAGGGCGAGACCGATGCCACGGCTCAAATGAAGAAAA AAAGTGGAAGTGCTCAAAAAAAAGTTATTGTTGTTAATTCATCCATTAGT CAACCTTGTAAGGATGTCGCGAAAGGTTTCAAGCGGCTGCTGAAGTTTGG TAGGAAAAATCGCGCATCAGAGAGTTTGATTGAAGGAGATGATAAAACGG AAGATCGCCGAGATCTAGCTAACCGGTCATCAGAAGACTTAAGGAAATCA ACAATCAGATTTTCTCATGCTCATCCTTCTGATAACAGCTTCAATGAAAA TGAACTGTTAAATGAACAAGGTAACATAATTCTTCTCACTAATCCCTTAC TATTGAGCAATATCTCGATAACTGCTCAACGATTTAACTTCGACTCGTTT CGCCATTTTCCTTTATCATTTTTCTATTATGAATTGGACTCTTTTCTCAC TCTTTCTGTCTTAGATTTCATTCTTTGATAACACAATATCCTTCAATAGA TACTGATATTGGTAAATTAGCATGATCATGCTTTGCATTGCTTTCAGCTA TTGCCTTTTTTCGGCTGCACATATTCATGTTTTCATGCTTGATCTTTCGC TTTTTTTTGGAAGTGGAAAAAAAAGTTACGAACAAATTTCAACCGATTAA GTTCATTCCGAATTCTTGCAGTCCAATCCTTGAGAAGTTCTATCCCTGCA CCTCCTGCTAACTTTAAATTAAGGGATGATCATATATCCGGAAGTTCATT AAAGGGTGAGGCCTAA back to topprotein sequence of rna-TanjilR_21550_La_Tanjil_v1.0 >rna-TanjilR_21550_La_Tanjil_v1.0 ID=rna-TanjilR_21550_La_Tanjil_v1.0; Name=rna-TanjilR_21550_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=569bp MNYPKSQPLNHEQVLETSKVVSSRKHYKGNHDDLKMKVDELEKLFADHKL RINGSVRRIDAISFVNVNGDDDDYYGDDCRGKYYDKYMKKRDAKLREDWS MKREEKEARMKAMQDSFDQNSAEMKEKFSCSYHAHKFTSLKSFVKREQYR IDSIQNEDVGDVSELLEEKIYEQDSIVSESTFGDCAARQSKKNLPNKQVS AATSSTTKPSFGMSKTNQYRLRNYARSRSTLEGMEGIKEVKQKRTQSLRK STSANPAEFYDLAPLKFDMEQTDLNHYDRSRRPFAEKGYSLGPDASGGAT RMISSTKENEEFDELELDVEDSLDIAKEEQKEEIETFAIVDHVYTNNGMV RLSQDCEKSVNSGSEIGDSTRSLSQVEHALVAEMPNVMHESPVESPVLWN SHMQHSFSYPNESSDIDASVDSPSGSPVSRNSRSLIQGETDATAQMKKKS GSAQKKVIVVNSSISQPCKDVAKGFKRLLKFGRKNRASESLIEGDDKTED RRDLANRSSEDLRKSTIRFSHAHPSDNSFNENELLNEQVQSLRSSIPAPP ANFKLRDDHISGSSLKGEA back to topmRNA from alignment at Chr_LG16-CM007376.1:18284324..18286589- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >rna-TanjilR_21550_La_Tanjil_v1.0 ID=rna-TanjilR_21550_La_Tanjil_v1.0; Name=rna-TanjilR_21550; organism=Lupinus angustifolius; type=mRNA; length=2266bp; location=Sequence derived from: Chr_LG16-CM007376.1:18284324..18286589- (Lupinus angustifolius ATGAATTACCCAAAATCTCAACCTCTTAACCATGAACAAGTTTTGGAAAC
TTCTAAAGTTGTTTCATCAAGAAAGCACTATAAGGGAAACCATGATGATC
TCAAAATGAAGGTTGATGAACTTGAAAAGCTTTTTGCAGATCATAAACTA
CGAATCAATGGTTCTGTAAGGAGAATTGATGCTATTTCATTTGTTAATGT
TAATGGTGATGATGATGATTATTATGGTGATGATTGTAGAGGAAAATATT
ATGATAAGTATATGAAGAAAAGAGATGCTAAACTTAGAGAAGATTGGAGT
ATGAAGAGAGAAGAAAAAGAAGCTAGAATGAAAGCCATGCAAGATAGTTT
TGATCAGAATAGTGCTGAGATGAAAGAAAAGTTTTCATGTTCTTATCATG
CTCACAAGTTTACATCTCTCAAATCATTTGTTAAGAGAGAACAGGTATTT
CTTTATTTGTGTCATGGTGTTTTTGTGATGAATGATTGAATGCAATTCTT
TTGTTTCAACGGTTTTAGATTGCAGCCGCGATACCAAAACTTTAACGTAT
TGGCGTCTGTCTATAGCGCTCGCTCGTGGACCCAGATTTAAAACCTTGAC
AAAACGACATCCTTTTTTGTTCTGATATTAATCCATGTTTTTTCTGTAGT
ATCGAATAGATTCTATTCAGAATGAAGATGTTGGTGATGTTTCTGAGTTG
TTGGAAGAAAAGATTTATGAACAAGATAGCATAGTTAGTGAATCAACTTT
CGGAGATTGTGCTGCAAGGCAAAGCAAGAAGAATTTGCCTAACAAACAAG
TGTCTGCAGCCACATCTAGCACAACAAAGCCTTCTTTCGGAATGAGTAAA
ACGAACCAATATCGGTTGCGAAACTATGCTCGTAGCAGAAGCACTCTTGA
AGGGATGGAAGGTATCAAGGAAGTGAAGCAGAAGCGAACTCAATCTTTAC
GAAAAAGTACTTCTGCTAATCCTGCAGAGTTTTATGATTTGGCTCCATTG
AAATTTGACATGGAGCAGACTGATCTGAACCATTATGATCGGTCGCGAAG
GCCGTTCGCCGAAAAAGGTTATAGTCTAGGCCCGGATGCTAGTGGCGGTG
CTACCAGGATGATATCTAGTACCAAGGAAAATGAAGAATTTGATGAGCTT
GAACTCGATGTGGAAGATTCTCTTGATATAGCGAAAGAGGAACAGAAAGA
AGAGATTGAAACTTTTGCTATAGTAGATCATGTTTACACTAATAATGGAA
TGGTGAGGCTGAGCCAAGATTGTGAGAAATCTGTTAATTCTGGTTCCGAA
ATCGGTGATTCTACAAGATCTCTTTCTCAAGTAGAACATGCTTTAGTAGC
TGAAATGCCTAATGTTATGCACGAGTCGCCGGTTGAAAGCCCTGTGTTAT
GGAATTCACATATGCAGCATTCCTTTTCTTACCCGAATGAATCCTCTGAT
ATTGATGCTTCTGTAGATTCTCCAAGTGGTAGCCCCGTGTCTCGGAATTC
TCGTTCCCTTATCCAGGGCGAGACCGATGCCACGGCTCAAATGAAGAAAA
AAAGTGGAAGTGCTCAAAAAAAAGTTATTGTTGTTAATTCATCCATTAGT
CAACCTTGTAAGGATGTCGCGAAAGGTTTCAAGCGGCTGCTGAAGTTTGG
TAGGAAAAATCGCGCATCAGAGAGTTTGATTGAAGGAGATGATAAAACGG
AAGATCGCCGAGATCTAGCTAACCGGTCATCAGAAGACTTAAGGAAATCA
ACAATCAGATTTTCTCATGCTCATCCTTCTGATAACAGCTTCAATGAAAA
TGAACTGTTAAATGAACAAGGTAACATAATTCTTCTCACTAATCCCTTAC
TATTGAGCAATATCTCGATAACTGCTCAACGATTTAACTTCGACTCGTTT
CGCCATTTTCCTTTATCATTTTTCTATTATGAATTGGACTCTTTTCTCAC
TCTTTCTGTCTTAGATTTCATTCTTTGATAACACAATATCCTTCAATAGA
TACTGATATTGGTAAATTAGCATGATCATGCTTTGCATTGCTTTCAGCTA
TTGCCTTTTTTCGGCTGCACATATTCATGTTTTCATGCTTGATCTTTCGC
TTTTTTTTGGAAGTGGAAAAAAAAGTTACGAACAAATTTCAACCGATTAA
GTTCATTCCGAATTCTTGCAGTCCAATCCTTGAGAAGTTCTATCCCTGCA
CCTCCTGCTAACTTTAAATTAAGGGATGATCATATATCCGGAAGTTCATT
AAAGGGTGAGGCCTAA back to topCoding sequence (CDS) from alignment at Chr_LG16-CM007376.1:18284324..18286589- >rna-TanjilR_21550_La_Tanjil_v1.0 ID=rna-TanjilR_21550_La_Tanjil_v1.0; Name=rna-TanjilR_21550; organism=Lupinus angustifolius; type=CDS; length=1710bp; location=Sequence derived from: Chr_LG16-CM007376.1:18284324..18286589- (Lupinus angustifolius ATGAATTACCCAAAATCTCAACCTCTTAACCATGAACAAGTTTTGGAAAC TTCTAAAGTTGTTTCATCAAGAAAGCACTATAAGGGAAACCATGATGATC TCAAAATGAAGGTTGATGAACTTGAAAAGCTTTTTGCAGATCATAAACTA CGAATCAATGGTTCTGTAAGGAGAATTGATGCTATTTCATTTGTTAATGT TAATGGTGATGATGATGATTATTATGGTGATGATTGTAGAGGAAAATATT ATGATAAGTATATGAAGAAAAGAGATGCTAAACTTAGAGAAGATTGGAGT ATGAAGAGAGAAGAAAAAGAAGCTAGAATGAAAGCCATGCAAGATAGTTT TGATCAGAATAGTGCTGAGATGAAAGAAAAGTTTTCATGTTCTTATCATG CTCACAAGTTTACATCTCTCAAATCATTTGTTAAGAGAGAACAGTATCGA ATAGATTCTATTCAGAATGAAGATGTTGGTGATGTTTCTGAGTTGTTGGA AGAAAAGATTTATGAACAAGATAGCATAGTTAGTGAATCAACTTTCGGAG ATTGTGCTGCAAGGCAAAGCAAGAAGAATTTGCCTAACAAACAAGTGTCT GCAGCCACATCTAGCACAACAAAGCCTTCTTTCGGAATGAGTAAAACGAA CCAATATCGGTTGCGAAACTATGCTCGTAGCAGAAGCACTCTTGAAGGGA TGGAAGGTATCAAGGAAGTGAAGCAGAAGCGAACTCAATCTTTACGAAAA AGTACTTCTGCTAATCCTGCAGAGTTTTATGATTTGGCTCCATTGAAATT TGACATGGAGCAGACTGATCTGAACCATTATGATCGGTCGCGAAGGCCGT TCGCCGAAAAAGGTTATAGTCTAGGCCCGGATGCTAGTGGCGGTGCTACC AGGATGATATCTAGTACCAAGGAAAATGAAGAATTTGATGAGCTTGAACT CGATGTGGAAGATTCTCTTGATATAGCGAAAGAGGAACAGAAAGAAGAGA TTGAAACTTTTGCTATAGTAGATCATGTTTACACTAATAATGGAATGGTG AGGCTGAGCCAAGATTGTGAGAAATCTGTTAATTCTGGTTCCGAAATCGG TGATTCTACAAGATCTCTTTCTCAAGTAGAACATGCTTTAGTAGCTGAAA TGCCTAATGTTATGCACGAGTCGCCGGTTGAAAGCCCTGTGTTATGGAAT TCACATATGCAGCATTCCTTTTCTTACCCGAATGAATCCTCTGATATTGA TGCTTCTGTAGATTCTCCAAGTGGTAGCCCCGTGTCTCGGAATTCTCGTT CCCTTATCCAGGGCGAGACCGATGCCACGGCTCAAATGAAGAAAAAAAGT GGAAGTGCTCAAAAAAAAGTTATTGTTGTTAATTCATCCATTAGTCAACC TTGTAAGGATGTCGCGAAAGGTTTCAAGCGGCTGCTGAAGTTTGGTAGGA AAAATCGCGCATCAGAGAGTTTGATTGAAGGAGATGATAAAACGGAAGAT CGCCGAGATCTAGCTAACCGGTCATCAGAAGACTTAAGGAAATCAACAAT CAGATTTTCTCATGCTCATCCTTCTGATAACAGCTTCAATGAAAATGAAC TGTTAAATGAACAAGTCCAATCCTTGAGAAGTTCTATCCCTGCACCTCCT GCTAACTTTAAATTAAGGGATGATCATATATCCGGAAGTTCATTAAAGGG TGAGGCCTAA back to top
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