rna-TanjilR_22206
|
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_22206 vs. DB:Swiss
Match: P2C70_ARATH (Protein phosphatase 2C 70 OS=Arabidopsis thaliana OX=3702 GN=KAPP PE=1 SV=2) HSP 1 Score: 103.219 bits (256), Expect = 5.447e-38 Identity = 49/82 (59.76%), Postives = 65/82 (79.27%), Query Frame = 2
Query: 4154 VNGKQIKLTEDHKITDYSERVRIEERGDPLKEGETRLYGINLGRMLGDKFLKQQDSRFSSEPYISQVLHIHQANR-AFALLA 4396
+ G+ I++TEDH++ SER R +E G L++GETRL+GINL RMLGDKF KQQDSRFS+EPYIS+ L I Q+++ FA+LA
Sbjct: 438 LGGRYIQMTEDHRVVSLSERKRFQEAGLALRDGETRLFGINLARMLGDKFPKQQDSRFSAEPYISEPLRIDQSSKDVFAVLA 519 HSP 2 Score: 62.3882 bits (150), Expect = 5.447e-38 Identity = 25/38 (65.79%), Postives = 32/38 (84.21%), Query Frame = 3
Query: 3942 LIANSFQGCTATVLLVWADGHQNFFAQCANVGDSACIM 4055
L + ++GCTATVLLVW D +NFFAQCAN+GDSAC++
Sbjct: 399 LEEHQYEGCTATVLLVWKDNEENFFAQCANLGDSACVI 436 HSP 3 Score: 37.7354 bits (86), Expect = 5.447e-38 Identity = 17/25 (68.00%), Postives = 21/25 (84.00%), Query Frame = 1
Query: 4480 IFSDGLWDVISIKKAFQLVLQVFNK 4554
+ SDGLWDV+S KKA QLVLQ+ +K
Sbjct: 518 LASDGLWDVVSPKKAVQLVLQMRDK 542 HSP 4 Score: 143.665 bits (361), Expect = 5.367e-34 Identity = 78/152 (51.32%), Postives = 96/152 (63.16%), Query Frame = 1
Query: 2134 LTLEVISGPSCGLHCSVQSTNPSRLPLTLGRISPTDLLIKDSEVSGKHALIKWNLDVXXXXXXXXXXXXXXXYIILCSNNYL*NYIIQKMKWELVDMGSLNGTLLNSQPINHPDTGSRNWGDPIILANGDVITLGTTSKVMVNIMS--EFRL 2583
L LEVI+GP+ GL +V ST+ S+LP+ LGR+SP+DL +KDSEVSGKHA I WN K KWELVDMGSLNGTL+NS I+HPD GSR WG+P+ LA+ D+ITLGTT+KV V I S EF++
Sbjct: 182 LFLEVIAGPAIGLQHAVNSTSSSKLPVKLGRVSPSDLALKDSEVSGKHAQITWN--------------------------------STKFKWELVDMGSLNGTLVNSHSISHPDLGSRKWGNPVELASDDIITLGTTTKVYVRISSQNEFQI 301 HSP 5 Score: 82.0333 bits (201), Expect = 1.110e-20 Identity = 33/48 (68.75%), Postives = 42/48 (87.50%), Query Frame = 2
Query: 2663 VHITSENHHCIPFGVGMASDPMAMRRGGKKLPMEDVCYYQWPLPGLDQ 2806
V I+S+N IPF +G+ASDPMAMRRGG+KLPMEDVC+Y+WPLPG ++
Sbjct: 291 VRISSQNEFQIPFKIGVASDPMAMRRGGRKLPMEDVCHYKWPLPGANK 338 HSP 6 Score: 42.3578 bits (98), Expect = 1.110e-20 Identity = 15/24 (62.50%), Postives = 21/24 (87.50%), Query Frame = 1
Query: 2908 QFGIFGICDGHGGDGAAKSASKLV 2979
+FG+F +CDGHGG GAA+SA K++
Sbjct: 338 KFGLFCVCDGHGGSGAAQSAIKII 361
BLAST of rna-TanjilR_22206 vs. DB:Swiss
Match: Y9461_DICDI (Probable protein phosphatase DDB_G0279461 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0279461 PE=3 SV=2) HSP 1 Score: 55.8398 bits (133), Expect = 8.050e-17 Identity = 27/63 (42.86%), Postives = 39/63 (61.90%), Query Frame = 2
Query: 4175 LTEDHKITDYSERVRIEERGDPLKEGETRLYGINLGRMLGDKFLKQQDSRFSSEPYISQVLHI 4363
L++DH+ TD E RI+ G L EG+TR+ G+ + R LGD F+K + S EPY+S + I
Sbjct: 882 LSKDHRATDPEEIQRIKNDGITLTEGQTRINGLMVSRALGDHFIKHLNCGLSGEPYVSPPISI 944 HSP 2 Score: 40.817 bits (94), Expect = 8.050e-17 Identity = 19/33 (57.58%), Postives = 22/33 (66.67%), Query Frame = 3
Query: 3957 FQGCTATVLLVWADGHQNFFAQCANVGDSACIM 4055
++G TATV LVW GHQ F Q ANVGDS +
Sbjct: 842 YEGATATVCLVWRAGHQR-FVQSANVGDSTAFL 873 HSP 3 Score: 34.2686 bits (77), Expect = 8.050e-17 Identity = 15/31 (48.39%), Postives = 20/31 (64.52%), Query Frame = 1
Query: 4444 PFNIPDFAFHHFIFSDGLWDVISIKKAFQLV 4536
P +I F H + SDGLWDVIS +A ++V
Sbjct: 941 PISITPFHSHLIVASDGLWDVISGNRAMEIV 971
BLAST of rna-TanjilR_22206 vs. DB:Swiss
Match: Y2105_DICDI (Probable protein phosphatase DDB_G0282105 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0282105 PE=3 SV=1) HSP 1 Score: 57.3806 bits (137), Expect = 3.010e-12 Identity = 26/60 (43.33%), Postives = 42/60 (70.00%), Query Frame = 2
Query: 4169 IKLTEDHKITDYSERVRIEERGDPLKEGETRLYGINLGRMLGDKFLKQQDSRFSSEPYIS 4348
I+LT DHK D SE+ RI+++G P+ + +TR+ G+ + R LG+ F+K+Q+ S P+IS
Sbjct: 829 IELTFDHKANDPSEKQRIKDQGIPVSDNQTRINGVAVSRSLGNHFIKEQNIGMISTPHIS 888 HSP 2 Score: 38.891 bits (89), Expect = 3.010e-12 Identity = 15/39 (38.46%), Postives = 24/39 (61.54%), Query Frame = 3
Query: 3954 SFQGCTATVLLVWADGHQNF-----FAQCANVGDSACIM 4055
++GCTAT+ L+W+DG + + Q NVGDS+ +
Sbjct: 784 EYEGCTATLALIWSDGEEQQQQQQRYLQVGNVGDSSAFL 822 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_22206 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 3
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_22206_La_Tanjil_v1.0 ID=rna-TanjilR_22206_La_Tanjil_v1.0; Name=rna-TanjilR_22206; organism=Lupinus angustifolius; type=mRNA; length=4994bpback to top protein sequence of rna-TanjilR_22206_La_Tanjil_v1.0 >rna-TanjilR_22206_La_Tanjil_v1.0 ID=rna-TanjilR_22206_La_Tanjil_v1.0; Name=rna-TanjilR_22206_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=538bpback to top mRNA from alignment at Chr_LG17-CM007377.1:92698..97691+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_22206_La_Tanjil_v1.0 ID=rna-TanjilR_22206_La_Tanjil_v1.0; Name=rna-TanjilR_22206; organism=Lupinus angustifolius; type=mRNA; length=4994bp; location=Sequence derived from: Chr_LG17-CM007377.1:92698..97691+ (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG17-CM007377.1:92698..97691+ >rna-TanjilR_22206_La_Tanjil_v1.0 ID=rna-TanjilR_22206_La_Tanjil_v1.0; Name=rna-TanjilR_22206; organism=Lupinus angustifolius; type=CDS; length=1617bp; location=Sequence derived from: Chr_LG17-CM007377.1:92698..97691+ (Lupinus angustifoliusback to top Annotated Terms
The
following terms have been associated with
this mRNA:
|