rna-TanjilR_22035
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_22035 vs. DB:Swiss
Match: WUS_ANTMA (Protein WUSCHEL OS=Antirrhinum majus OX=4151 GN=WUS PE=2 SV=1) HSP 1 Score: 162.925 bits (411), Expect = 2.306e-45 Identity = 82/122 (67.21%), Postives = 94/122 (77.05%), Query Frame = 1
Query: 31 DGGSGKGGFMSRQSSTRWTPTTDQIRILKDLYYNNGIRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKKRFTSDVPMQRAPTNTASTCKHDEPPIHTKYSNI-----PSTGNG 381
+ GSG F+ RQSSTRWTPTTDQIRILKDLYYNNG+RSP+AEQIQRISA+LRQYGKIEGKNVFYWFQNHKARERQKKRFT+D T + PP++ K+SN+ PS+ NG
Sbjct: 24 NNGSGGSSFLCRQSSTRWTPTTDQIRILKDLYYNNGVRSPTAEQIQRISAKLRQYGKIEGKNVFYWFQNHKARERQKKRFTAD-HHHHMNVPTIHNHHYKPPPVYNKFSNMNSGSFPSSSNG 144
BLAST of rna-TanjilR_22035 vs. DB:Swiss
Match: WUS_PETHY (Protein WUSCHEL OS=Petunia hybrida OX=4102 GN=WUS PE=2 SV=1) HSP 1 Score: 152.91 bits (385), Expect = 3.820e-43 Identity = 81/125 (64.80%), Postives = 91/125 (72.80%), Query Frame = 1
Query: 16 QQPNEDGGSGK---GGFMSRQSSTRWTPTTDQIRILKDLYYNNGIRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKKRFTS-------DVPMQRAPTNTASTCKHDEPPIHTKYSN 360
Q N + GS K FM RQ+STRWTPTTDQIRILKDLYYNNG+RSP+AEQIQRISA+LRQYGKIEGKNVFYWFQNHKARERQKKR + ++PMQ D+ PIH KY+N
Sbjct: 23 QGTNIEDGSNKNNSSNFMCRQNSTRWTPTTDQIRILKDLYYNNGVRSPTAEQIQRISAKLRQYGKIEGKNVFYWFQNHKARERQKKRLIAAATTDNTNLPMQMQFQRGVWRSSADD-PIHHKYTN 146 HSP 2 Score: 45.0542 bits (105), Expect = 3.820e-43 Identity = 18/33 (54.55%), Postives = 27/33 (81.82%), Query Frame = 2
Query: 473 PSSSAIGMVSMGHMGNYGYGSVPMEKSFRVCYI 571
PS+S+ G++++G GN+GYG++ MEKSFR C I
Sbjct: 152 PSASSHGVLAVGQNGNHGYGALAMEKSFRDCSI 184 HSP 3 Score: 55.8398 bits (133), Expect = 2.851e-7 Identity = 42/107 (39.25%), Postives = 57/107 (53.27%), Query Frame = 3
Query: 1104 NLGYFGMDQYSSA--YTFFDKRRQ------------NXXXXXXXXXXDGSNEIQTLPLFPVHCEDIHGYCNLK-PNSSNYVGAGWYQAEDGFMNGSRASLELSLNSY 1379
N + G+D YSS Y F +K + EE E + ++ I+TLPLFP+H E+I +CNLK SS WY+A+D +RASLELSLNS+
Sbjct: 197 NFAWAGVDPYSSTTTYPFLEKTKHFENETLEADEEQQEEDQENYYYQRTTSAIETLPLFPMHEENISSFCNLKHQESSGGFYTEWYRADDNLA-AARASLELSLNSF 302
BLAST of rna-TanjilR_22035 vs. DB:Swiss
Match: WUS_SOLLC (Protein WUSCHEL OS=Solanum lycopersicum OX=4081 GN=WUS PE=2 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 1.005e-40 Identity = 71/91 (78.02%), Postives = 79/91 (86.81%), Query Frame = 1
Query: 7 MEAQQPNEDGG-SGKGGFMSRQSSTRWTPTTDQIRILKDLYYNNGIRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKKRFTS 276
ME Q EDGG + F+ RQSS+RWTPT+DQIRILKDLYYNNG+RSP+AEQIQRISA+LRQYGKIEGKNVFYWFQNHKARERQKKR +
Sbjct: 1 MEHQHNIEDGGKNSNNSFLCRQSSSRWTPTSDQIRILKDLYYNNGVRSPTAEQIQRISAKLRQYGKIEGKNVFYWFQNHKARERQKKRLIA 91
BLAST of rna-TanjilR_22035 vs. DB:Swiss
Match: WUS_ARATH (Protein WUSCHEL OS=Arabidopsis thaliana OX=3702 GN=WUS PE=1 SV=2) HSP 1 Score: 133.265 bits (334), Expect = 2.811e-34 Identity = 59/72 (81.94%), Postives = 69/72 (95.83%), Query Frame = 1
Query: 55 FMSRQSSTRWTPTTDQIRILKDLYYNNGIRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKKRF 270
+ RQ+STRWTPTT+QI+ILK+LYYNN IRSP+A+QIQ+I+ARLRQ+GKIEGKNVFYWFQNHKARERQKKRF
Sbjct: 30 YTCRQTSTRWTPTTEQIKILKELYYNNAIRSPTADQIQKITARLRQFGKIEGKNVFYWFQNHKARERQKKRF 101
BLAST of rna-TanjilR_22035 vs. DB:Swiss
Match: WOX1A_ORYSJ (WUSCHEL-related homeobox 1A OS=Oryza sativa subsp. japonica OX=39947 GN=WOX1A PE=2 SV=2) HSP 1 Score: 123.635 bits (309), Expect = 9.428e-31 Identity = 55/70 (78.57%), Postives = 65/70 (92.86%), Query Frame = 1
Query: 58 MSRQSSTRWTPTTDQIRILKDLYYNNGIRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKKR 267
+ R S TRWTPTT+QI+IL++LYY+ GIRSP++EQIQRI+A LRQYG+IEGKNVFYWFQNHKARERQKKR
Sbjct: 28 VCRPSGTRWTPTTEQIKILRELYYSCGIRSPNSEQIQRIAAMLRQYGRIEGKNVFYWFQNHKARERQKKR 97
BLAST of rna-TanjilR_22035 vs. DB:Swiss
Match: WOX1B_ORYSJ (WUSCHEL-related homeobox 1B OS=Oryza sativa subsp. japonica OX=39947 GN=WOX1B PE=1 SV=2) HSP 1 Score: 123.25 bits (308), Expect = 1.411e-30 Identity = 55/70 (78.57%), Postives = 65/70 (92.86%), Query Frame = 1
Query: 58 MSRQSSTRWTPTTDQIRILKDLYYNNGIRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKKR 267
+ R S TRWTPTT+QI+IL++LYY+ GIRSP++EQIQRI+A LRQYG+IEGKNVFYWFQNHKARERQKKR
Sbjct: 28 VCRPSGTRWTPTTEQIKILRELYYSCGIRSPNSEQIQRIAAMLRQYGRIEGKNVFYWFQNHKARERQKKR 97
BLAST of rna-TanjilR_22035 vs. DB:Swiss
Match: WOX1_ARATH (WUSCHEL-related homeobox 1 OS=Arabidopsis thaliana OX=3702 GN=WOX1 PE=2 SV=2) HSP 1 Score: 103.99 bits (258), Expect = 3.140e-23 Identity = 49/81 (60.49%), Postives = 64/81 (79.01%), Query Frame = 1
Query: 73 STRWTPTTDQIRILKDLYYNNGIRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKKRFTSDVPMQRAPTNTAS 315
S+RW PT DQ+R+L++LY G R+PSA+ IQ+I+A+LR+YGKIEGKNVFYWFQNHKARERQK+R + + +TAS
Sbjct: 74 SSRWNPTPDQLRVLEELY-RQGTRTPSADHIQQITAQLRRYGKIEGKNVFYWFQNHKARERQKRRRQMETGHEETVLSTAS 153
BLAST of rna-TanjilR_22035 vs. DB:Swiss
Match: WOX2_ARATH (WUSCHEL-related homeobox 2 OS=Arabidopsis thaliana OX=3702 GN=WOX2 PE=2 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.162e-23 Identity = 46/66 (69.70%), Postives = 57/66 (86.36%), Query Frame = 1
Query: 70 SSTRWTPTTDQIRILKDLYYNNGIRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKKR 267
SS+RW PT DQI +L++LY GIR+PSA+QIQ+I+ RLR YG IEGKNVFYWFQNHKAR+RQK++
Sbjct: 11 SSSRWNPTKDQITLLENLY-KEGIRTPSADQIQQITGRLRAYGHIEGKNVFYWFQNHKARQRQKQK 75
BLAST of rna-TanjilR_22035 vs. DB:Swiss
Match: WOX3_ARATH (WUSCHEL-related homeobox 3 OS=Arabidopsis thaliana OX=3702 GN=WOX3 PE=1 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.542e-21 Identity = 45/70 (64.29%), Postives = 58/70 (82.86%), Query Frame = 1
Query: 58 MSRQSSTRWTPTTDQIRILKDLYYNNGIRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKKR 267
MS +STRW PT +Q+ IL+++Y +GIR+P+A QIQ+I+A L YG+IEGKNVFYWFQNHKAR+RQK R
Sbjct: 1 MSPVASTRWCPTPEQLMILEEMY-RSGIRTPNAVQIQQITAHLAFYGRIEGKNVFYWFQNHKARDRQKLR 69
BLAST of rna-TanjilR_22035 vs. DB:Swiss
Match: WOX7_ARATH (WUSCHEL-related homeobox 7 OS=Arabidopsis thaliana OX=3702 GN=WOX7 PE=2 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 7.057e-21 Identity = 48/99 (48.48%), Postives = 60/99 (60.61%), Query Frame = 1
Query: 79 RWTPTTDQIRILKDLYYNNGIRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKKRFTSDVPMQRAPTNTASTCKHDEPPIHTKYSNIPSTG 375
RW PT +Q+++L DL+ G+R+PS +QIQ+IS L YGKIE KNVFYWFQNHKARERQK R S V S + D H +P+ G
Sbjct: 29 RWNPTVEQVKLLTDLF-KAGLRTPSTDQIQKISMELSFYGKIESKNVFYWFQNHKARERQKCRKISTVKFDHRQDTDLSKPRRDNVRRH----QLPAKG 122 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_22035 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_22035_La_Tanjil_v1.0 ID=rna-TanjilR_22035_La_Tanjil_v1.0; Name=rna-TanjilR_22035; organism=Lupinus angustifolius; type=mRNA; length=1406bpback to top protein sequence of rna-TanjilR_22035_La_Tanjil_v1.0 >rna-TanjilR_22035_La_Tanjil_v1.0 ID=rna-TanjilR_22035_La_Tanjil_v1.0; Name=rna-TanjilR_22035_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=277bpback to top mRNA from alignment at Chr_LG17-CM007377.1:1311182..1312587+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_22035_La_Tanjil_v1.0 ID=rna-TanjilR_22035_La_Tanjil_v1.0; Name=rna-TanjilR_22035; organism=Lupinus angustifolius; type=mRNA; length=1406bp; location=Sequence derived from: Chr_LG17-CM007377.1:1311182..1312587+ (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG17-CM007377.1:1311182..1312587+ >rna-TanjilR_22035_La_Tanjil_v1.0 ID=rna-TanjilR_22035_La_Tanjil_v1.0; Name=rna-TanjilR_22035; organism=Lupinus angustifolius; type=CDS; length=834bp; location=Sequence derived from: Chr_LG17-CM007377.1:1311182..1312587+ (Lupinus angustifoliusback to top |