rna-TanjilR_12973

Transcript Overview
Namerna-TanjilR_12973
Unique Namerna-TanjilR_12973_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length1842
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG17-CM007377.1supercontigChr_LG17-CM007377.1:1944983..1946824 -Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananL081Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL227Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR360Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR367Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR376Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR383Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiR0605Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaR0477Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR0479Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR0493Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR0503Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR0512Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
anccR0628Cajanus cajan Asha genome v1.0Cajanus cajan
anccR0638Cajanus cajan Asha genome v1.0Cajanus cajan
ancrR0569Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ancrR0576Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ancrR0619Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
anpsR0399Pisum sativum Cameor genome v1aPisum sativum
anpsR0413Pisum sativum Cameor genome v1aPisum sativum
anpvR0512Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR0516Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR0533Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR0558Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anvuR0437Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR0438Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR0453Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR0485Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anasR0531Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR0537Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR0541Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR0561Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anzwsR0452Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anzwsR0474Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anzwsR0482Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
antifR0458Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR0455Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
antifR0480Vicia faba cv. Tiffany genome v1.0Vicia faba
antifR0482Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR0474Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
anvfhR0476Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
anvrvR0445Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvrvR0458Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvrvR0459Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvrvR0461Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvuaR0413Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvuaR0414Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvuaR0441Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvuaR0458Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvuaR0460Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvssR0529Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR0531Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR0551Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR0562Vicia sativa cv. Studenica genome v1.0Vicia sativa
ancanR0427Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR0429Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR0443Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR0451Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR0461Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
anavjR0490Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0493Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0521Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0530Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
ancarR0462Cicer arietinum
ancarR0465Cicer arietinum
ancarR0476Cicer arietinum
ancarR0487Cicer arietinum
ancarR0499Cicer arietinum
anccaR0431Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR0452Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR0453Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR0456Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR0499Vigna umbellata FF25 genome v1.0Vigna umbellata
anccaR0471Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR0528Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR0546Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR0550Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR0555Vigna umbellata FF25 genome v1.0Vigna umbellata
anvvaR0489Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvvaR0496Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvvaR0515Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvvaR0520Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvasR0516Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0511Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0542Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0536Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0557Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0552Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0560Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0556Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0564Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0560Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvunR0423Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anvunR0424Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anpvfR0529Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anpvfR0533Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anvunR0438Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anpvfR0549Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anpvfR0575Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris

Orthologs
Gene/TranscriptAssemblySpecies
Vigun02g137900.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vigst.10G116700.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
LR48_mrnaVigan06g038600Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Cr_20440.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Ca_22848.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
rna-KK1_013000Cajanus cajan Asha genome v1.0Cajanus cajan
Ca_02101Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Vigan.10G172000.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Phvul.002G024100.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-XM_014664119.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vfaba.Tiffany.R1.1g296280.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Vum_10G01291.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Psat02G0480000-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
PvulFLAVERTChr02.140Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
jg3553.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Psat2g163520.1Pisum sativum Cameor genome v1aPisum sativum
XM_058916786.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Cc_v2.0_14190.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Va06G009770.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vfaba.Hedin2.R1.1g364120.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vigun02g137900.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_12973gene-TanjilG_12973_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_12973rna-TanjilR_12973_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_12973_La_Tanjil_v1.0rna-TanjilR_12973_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_12973_La_Tanjil_v1.0-CDS-Chr_LG17-CM007377.1_La_Tanjil_v1.0-1579734366:1944983..1946824rna-TanjilR_12973_La_Tanjil_v1.0-CDS-Chr_LG17-CM007377.1_La_Tanjil_v1.0-1579734366:1944983..1946824Lupinus angustifoliusCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_12973_La_Tanjil_v1.0-exon-Chr_LG17-CM007377.1_La_Tanjil_v1.0-1579734366:1944983..1946824rna-TanjilR_12973_La_Tanjil_v1.0-exon-Chr_LG17-CM007377.1_La_Tanjil_v1.0-1579734366:1944983..1946824Lupinus angustifoliusexon


Homology
BLAST of rna-TanjilR_12973 vs. DB:Swiss
Match: PP169_ARATH (Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E28 PE=2 SV=1)

HSP 1 Score: 453.366 bits (1165), Expect = 1.268e-150
Identity = 240/601 (39.93%), Postives = 370/601 (61.56%), Query Frame = 1
Query:    7 QLKLLHAQIILHGLTDQVLTLGKLVSFCSTHEQGDLRYAHLLFDQIPQPNKFMYNHLIRGYSNSDDPTMSLLLYRQMVSAGL---YPNEFTMPFVVKACS--FKPSYRKIVIVHANAIKLGMGSHACVQNAFLSAYVACRLIQSARKLFDDISDRTLVSWNSMIAGYGRMGCCKEVILLFQEMQNLGVELDVFTXXXXXXXXXKHGNLDLGRFVHIYIIITGIETDSIVTNALIDMYAKCGHLQCAKIVFDRMVDKNVVSWTCMVNAYANHGLIDYALELFNQMPIKNVVSWNSIIWCHVQEGQYSEAVELFRRMCISGVMPEEATLVSILSSCSHMGDLALGKEAHVFISDNNIAVSVTLYNSLIDMYAKCGALQTARDIFFAMPEKNVVSWNIIIGALALHGFGEDAIEMFEKMQENGLCPDEITFTGLLSACSHSGLVDSGQYYFDMM-STFGISPDIAHYACMVDLLGRWGLLGEAMTLIQKMPMKPDVVVWGALLGACRTYGNLEIGRPIMKQLLELGRYDSGLYVLLSNMYSESQRWDDMKKIRKIMDESGIKKCRAISFIEIDGCCHQFMVDDKRHGASTRIYSMLDQLMYHLK 1791
             LK + AQ+I++GL        +L++FC+  E   L Y+  +   I  PN F +N  IRG+S S++P  S LLY+QM+  G     P+ FT P + K C+     S   +++ H   ++L + SH  V NA +  + +C  +++ARK+FD+   R LVSWN +I GY ++G  ++ I +++ M++ GV+ D  T++ L+S  S  G+L+ G+  + Y+   G+     + NAL+DM++KCG +  A+ +FD +  + +VSWT M++ YA  GL+D + +LF+ M  K+VV WN++I   VQ  +  +A+ LF+ M  S   P+E T++  LS+CS +G L +G   H +I   +++++V L  SL+DMYAKCG +  A  +F  +  +N +++  IIG LALHG    AI  F +M + G+ PDEITF GLLSAC H G++ +G+ YF  M S F ++P + HY+ MVDLLGR GLL EA  L++ MPM+ D  VWGALL  CR +GN+E+G    K+LLEL   DSG+YVLL  MY E+  W+D K+ R++M+E G++K    S IE++G   +F+V DK    S +IY  L  L  H++
Sbjct:   68 HLKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKILKGIENPNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGHMILGHVLKLRLELVSH--VHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVNGIVCEFIVRDKSRPESEKIYDRLHCLGRHMR 666          
BLAST of rna-TanjilR_12973 vs. DB:Swiss
Match: PP175_ARATH (Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H33 PE=2 SV=1)

HSP 1 Score: 450.284 bits (1157), Expect = 1.307e-148
Identity = 235/604 (38.91%), Postives = 371/604 (61.42%), Query Frame = 1
Query:    1 MRQLKLLHAQIILHGLTDQVLTLGKLVSFCSTHEQGDLRYAHLLFDQIPQPNKFMYNHLIRGYSNSDDPTMSLLLYRQMVS-AGLYPNEFTMPFVVKACSFKPSYRKIVIVHANAIKLGMGSHACVQNAFLSAYVACRLIQSARKLFDDISDRTLVSWNSMIAGYGRMGCCKEVILLFQEMQNLGVELDVFTXXXXXXXXXKHGNLDLGRFVHIYIIITGIETDSIVTNALIDMYAKCGHLQCAKIVFDRMVDKNVVSWTCMVNAYANHGLIDYALELFNQMPIKNVVSWNSIIWCHVQEGQYSEAVELFRRMCISGVMP-EEATLVSILSSCSHMGDLALGKEAHVFISDNNIAVSVTLYNSLIDMYAKCGALQTARDIFFAMPEKNVVSWNIIIGALALHGFGEDAIEMFEKMQENGLCPDEITFTGLLSACSHSGLVDSGQYYFDMM-STFGISPDIAHYACMVDLLGRWGLLGEAMTLIQKMPMKPDVVVWGALLGACRTYGNLEIGRPIMKQLLELGRYDSGLYVLLSNMYSESQRWDDMKKIRKIMDESGIKKCRAISFIEIDGCCHQFMVDDKRHGASTRIYSMLDQLMYHLKFVGY 1803
            +RQLK  H  +I  G      +  KL +  +      L YA  +FD+IP+PN F +N LIR Y++  DP +S+  +  MVS +  YPN++T PF++KA +   S      +H  A+K  +GS   V N+ +  Y +C  + SA K+F  I ++ +VSWNSMI G+ + G   + + LF++M++  V+    T+V +LS  +K  NL+ GR V  YI    +  +  + NA++DMY KCG ++ AK +FD M +K+ V+WT M++ YA     + A E+ N MP K++V+WN++I  + Q G+ +EA+ +F  + +   M   + TLVS LS+C+ +G L LG+  H +I  + I ++  + ++LI MY+KCG L+ +R++F ++ +++V  W+ +IG LA+HG G +A++MF KMQE  + P+ +TFT +  ACSH+GLVD  +  F  M S +GI P+  HYAC+VD+LGR G L +A+  I+ MP+ P   VWGALLGAC+ + NL +      +LLEL   + G +VLLSN+Y++  +W+++ ++RK M  +G+KK    S IEIDG  H+F+  D  H  S ++Y  L ++M  LK  GY
Sbjct:   43 LRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGY 646          
BLAST of rna-TanjilR_12973 vs. DB:Swiss
Match: PP235_ARATH (Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E51 PE=3 SV=2)

HSP 1 Score: 424.091 bits (1089), Expect = 4.066e-139
Identity = 226/615 (36.75%), Postives = 358/615 (58.21%), Query Frame = 1
Query:    7 QLKLLHAQIILHGLTDQVLTLGKLVSFCSTHEQGDLRYAHLLFDQIPQPNKFMYNHLIRGYSNSDDPTMSLLLYRQMVSAGLYPNEFTMPFVVK---------ACSFKPSYRKIVIVHANAIKLGMGSHACVQNAFLSAYVACRLIQSARKLFDDISDRTLVSWNSMIAGYGRMGCCKEVILLFQEMQNLGVELDVFTXXXXXXXXXKHGNLDLGRFVHIYIIITGIETDSIVTNALIDMYAKCGHLQCAKIVFDRMVDKNVVSWTCMVNAYANHGLIDYALELFNQMPIKNVVSWNSIIWCHVQEGQYSEAVELFRRMCISGVMPEEATLVSILSSCSHMGDLALGKEAHVFISDNNIAVSVTLYNSLIDMYAKCGALQTARDIFFAMPEKNVVSWNIIIGALALHGFGEDAIEMFEKMQENGLCPDEITFTGLLSACSHSGLVDSGQYYF-DMMSTFGISPDIAHYACMVDLLGRWGLLGEAMTLIQKMPMKPDVVVWGALLGACRTYGNLEIGRPIMKQLLELGRYDSGLYVLLSNMYSESQRWDDMKKIRKIMDESGIKKCRAISFIEIDGCCHQFMVDDKRHGASTRIYSMLDQLMYHLKFVGYLCKPSD 1821
            Q K LH+Q I  G+        KL  F  +   G + YA+ LF +IP+P+  ++N++I+G+S  D     + LY  M+  G+ P+  T PF++          AC  K        +H + +K G+GS+  VQNA +  Y  C L+  AR +FD      + SWN MI+GY RM   +E I L  EM+   V     TL+ +LS  SK  + DL + VH Y+     E    + NAL++ YA CG +  A  +F  M  ++V+SWT +V  Y   G +  A   F+QMP+++ +SW  +I  +++ G ++E++E+FR M  +G++P+E T+VS+L++C+H+G L +G+    +I  N I   V + N+LIDMY KCG  + A+ +F  M +++  +W  ++  LA +G G++AI++F +MQ+  + PD+IT+ G+LSAC+HSG+VD  + +F  M S   I P + HY CMVD+LGR GL+ EA  +++KMPM P+ +VWGALLGA R + +  +     K++LEL   +  +Y LL N+Y+  +RW D++++R+ + +  IKK    S IE++G  H+F+  DK H  S  IY  L++L     F  YL   S+
Sbjct:   49 QFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGKK--------LHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAGDKSHLQSEEIYMKLEELAQESTFAAYLPDTSE 655          
BLAST of rna-TanjilR_12973 vs. DB:Swiss
Match: PP311_ARATH (Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H3 PE=2 SV=1)

HSP 1 Score: 416.387 bits (1069), Expect = 8.734e-136
Identity = 207/565 (36.64%), Postives = 341/565 (60.35%), Query Frame = 1
Query:  118 YAHLLFDQIPQP-NKFMYNHLIRGYSNSDDPTMSLLLYRQMVSAGLYPNEFTMPFVVKACSFKPSYRKIVIVHANAIKLGMGSHACVQNAFLSAYVACRLIQSARKLFDDISDRTLVSWNSMIAGYGRMGCCKEVILLFQEMQNLGVELDVFTXXXXXXXXXKHGNLDLGRFVHIYIIITGIETDSIVTNALIDMYAKCGHLQCAKIVFDRMVDKNVVSWTCMVNAYANHGLIDYALELFNQMPIKNVVSWNSIIWCHVQEGQYSEAVELFRRMCISGVMPEEATLVSILSSCSHMGDLALGKEAHVFISDNNIAVSVTLYNSLIDMYAKCGALQTARDIFFAMPEKNVVSWNIIIGALALHGFGEDAIEMFEKMQENGLCPDEITFTGLLSACSHSGLVDSGQYYF-DMMSTFGISPDIAHYACMVDLLGRWGLLGEAMTLIQKMPMKPDVVVWGALLGACRTYGNLEIGRPIMKQLLELGRYDSGLYVLLSNMYSESQRWDDMKKIRKIMDESGIKKCRAISFIEIDGCCHQFMVDDKRHGASTRIYSMLDQLMYHLKFVGYL 1806
            YA  +F  IP P    ++N  +R  S S +P  ++L Y+++   G   ++F+   ++KA S   +  + + +H  A K+       V+  F+  Y +C  I  AR +FD++S R +V+WN+MI  Y R G   E   LF+EM++  V  D   L +++S   + GN+   R ++ ++I   +  D+ +  AL+ MYA  G +  A+  F +M  +N+   T MV+ Y+  G +D A  +F+Q   K++V W ++I  +V+     EA+ +F  MC SG+ P+  ++ S++S+C+++G L   K  H  I  N +   +++ N+LI+MYAKCG L   RD+F  MP +NVVSW+ +I AL++HG   DA+ +F +M++  + P+E+TF G+L  CSHSGLV+ G+  F  M   + I+P + HY CMVDL GR  LL EA+ +I+ MP+  +VV+WG+L+ ACR +G LE+G+   K++LEL     G  VL+SN+Y+  QRW+D++ IR++M+E  + K + +S I+ +G  H+F++ DKRH  S  IY+ LD+++  LK  GY+
Sbjct:   62 YALNVFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIYAKLDEVVSKLKLAGYV 626          
BLAST of rna-TanjilR_12973 vs. DB:Swiss
Match: PPR21_ARATH (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 413.305 bits (1061), Expect = 2.335e-134
Identity = 231/648 (35.65%), Postives = 379/648 (58.49%), Query Frame = 1
Query:    1 MRQLKLLHAQIILHGLTDQVLTLGKLVSFC--STHEQGDLRYAHLLFDQIPQPNKFMYNHLIRGYSNSDDPTMSLLLYRQMVSAGLYPNEFTMPFVVKACSFKPSYRKIVIVHANAIKLGMGSHACVQNAFLSAYV------------------------------ACR-LIQSARKLFDDISDRTLVSWNSMIAGYGRMGCCKEVILLFQEMQNLGVELDVFTXXXXXXXXXKHGNLDLGRFVHIYIIITGIETDSIVTNALIDMYAKCGHLQCAKIVFDRMVDKNVVSWTCMVNAYANHGLIDYALELFNQMPIKNVVSWNSIIWCHVQEGQYSEAVELFRRMCISGVMPEEATLVSILSSCSHMGDLALGKEAHVFISD--NNIAVSVTLYNSLIDMYAKCGALQTARDIFFAMPEKNVVSWNIIIGALALHGFGEDAIEMFEKMQENGLCPDEITFTGLLSACSHSGLVDSGQYYFDMMST-FGISPDIAHYACMVDLLGRWGLLGEAMTLIQKMPMKPDVVVWGALLGACRTYGNLEIGRPIMKQLLELGRYDSGLYVLLSNMYSESQRWDDMKKIRKIMDESGIKKCRAISFIEIDGCCHQFMVDDKRHGASTRIYSMLDQLMYHLKFVGYLCKPSDDVEDI 1836
            ++ L+++HAQ+I  GL +    L KL+ FC  S H +G L YA  +F  I +PN  ++N + RG++ S DP  +L LY  M+S GL PN +T PFV+K+C+   ++++   +H + +KLG      V  + +S YV                              A R  I++A+KLFD+I  + +VSWN+MI+GY   G  KE + LF++M    V  D  T+V+++S  ++ G+++LGR VH++I   G  ++  + NALID+Y+KCG L+ A                                 LF ++P K+V+SWN++I  +     Y EA+ LF+ M  SG  P + T++SIL +C+H+G + +G+  HV+I      +  + +L  SLIDMYAKCG ++ A  +F ++  K++ SWN +I   A+HG  + + ++F +M++ G+ PD+ITF GLLSACSHSG++D G++ F  M+  + ++P + HY CM+DLLG  GL  EA  +I  M M+PD V+W +LL AC+ +GN+E+G    + L+++   + G YVLLSN+Y+ + RW+++ K R ++++ G+KK    S IEID   H+F++ DK H  +  IY ML+++   L+  G++   S+ ++++
Sbjct:   46 LQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEG-LPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETA-------------------------------CGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEM 661          
BLAST of rna-TanjilR_12973 vs. DB:Swiss
Match: PP261_ARATH (Pentatricopeptide repeat-containing protein At3g29230 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E27 PE=2 SV=1)

HSP 1 Score: 408.297 bits (1048), Expect = 4.281e-134
Identity = 214/598 (35.79%), Postives = 346/598 (57.86%), Query Frame = 1
Query:    1 MRQLKLLHAQIILHGLTDQVLTLGKLVSFCSTHEQGDLRYAHLLFDQIPQPNKFMYNHLIRGYSNSDDPTMSLLLYRQMVSAGLYPNEFTMPFVVKACSFKPSYRKIVIVHANAIKLGMGSHACVQNAFLSAYVACRL--IQSARKLFDDISDRTLVSWNSMIAGYGRMGCCKEVILLFQEMQNLGVELDVFTXXXXXXXXXKHGNLDLGRFVHIYIIITGIETDSIVTNALIDMYAKCGHLQCAKIVFDRMVDKNVVSWTCMVNAYANHGLIDYALELFNQMPI--KNVVSWNSIIWCHVQEGQYSEAVELFRRMCISGVMPEEATLVSILSSCSHMGDLALGKEAHVFISDNNIAVSVTLYNSLIDMYAKCGALQTARDIFFAMPEKNVVSWNIIIGALALHGFGEDAIEMFEKMQENGLCPDEITFTGLLSACSHSGLVDSG-QYYFDMMSTFGISPDIAHYACMVDLLGRWGLLGEAMTLIQKMPMKPDVVVWGALLGACRTYGNLEIGRPIMKQLLELGRYDSGLYVLLSNMYSESQRWDDMKKIRKIMDESGIKKCRAISFIEIDGCCHQFMVDDKRHGASTRIYSMLDQLM 1779
            + Q+K LHAQII   L + +    KL+S  S   Q +L  A  +F+Q+ +PN  + N LIR ++ +  P  +  ++ +M   GL+ + FT PF++KACS +     + ++H +  KLG+ S   V NA +  Y  C    ++ A KLF+ +S+R  VSWNSM+ G  + G  ++   LF EM                                        + D I  N ++D YA+C  +  A  +F++M ++N VSW+ MV  Y+  G ++ A  +F++MP+  KNVV+W  II  + ++G   EA  L  +M  SG+  + A ++SIL++C+  G L+LG   H  +  +N+  +  + N+L+DMYAKCG L+ A D+F  +P+K++VSWN ++  L +HG G++AIE+F +M+  G+ PD++TF  +L +C+H+GL+D G  Y++ M   + + P + HY C+VDLLGR G L EA+ ++Q MPM+P+VV+WGALLGACR +  ++I + ++  L++L   D G Y LLSN+Y+ ++ W+ +  IR  M   G++K    S +E++   H+F V DK H  S +IY ML  L+
Sbjct:   32 LNQVKQLHAQIIRRNLHEDLHIAPKLISALSLCRQTNL--AVRVFNQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARRLFDEMP---------------------------------------QRDLISWNTMLDGYARCREMSKAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDNLVKLDPCDPGNYSLLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSVELEDGIHEFTVFDKSHPKSDQIYQMLGSLI 588          

HSP 2 Score: 65.855 bits (159), Expect = 6.625e-10
Identity = 53/190 (27.89%), Postives = 84/190 (44.21%), Query Frame = 1
Query:  982 LSSCSHMGDLALGKEAHVFISDNNIAVSVTLYNSLIDMYAKCGALQTARDIFFAMPEKNVVSWNIIIGALALHGFGEDAIEMFEKMQENGLCPDEITFTGLLSACSHSGLVDSGQYYFDMMSTFGISPDIAHYACMVDLLGRWGLLG--EAMTLIQKMPMKPDVVVWGALLGACRTYGNLEIGRPIMKQL 1545
            L  C+++  +   K+ H  I   N+   + +   LI   + C     A  +F  + E NV   N +I A A +     A  +F +MQ  GL  D  T+  LL ACS    +   +   + +   G+S DI     ++D   R G LG  +AM L +KM  + D V W ++LG     G L   R +  ++
Sbjct:   26 LPKCANLNQV---KQLHAQIIRRNLHEDLHIAPKLISALSLCRQTNLAVRVFNQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSER-DTVSWNSMLGGLVKAGELRDARRLFDEM 211          
BLAST of rna-TanjilR_12973 vs. DB:Swiss
Match: PP151_ARATH (Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E76 PE=3 SV=1)

HSP 1 Score: 395.201 bits (1014), Expect = 9.020e-128
Identity = 220/631 (34.87%), Postives = 355/631 (56.26%), Query Frame = 1
Query:   10 LKLLHAQIILHGLTDQVLTLGKLV---SFCSTHEQGD--------------------------LRYAHLLFDQIPQPNKFMYNHLIRGYSNSDDPTMSLLLYRQMVSAGLYPNEFTMPFVVKACSFKPSYRKIVIVHANAIKLGMGSHACVQNAFLSAYVACRLIQSARKLFDDISDRTLVSWNSMIAGYGRMGCCKEVILLFQEMQNLGVELDVFTXXXXXXXXXKHGNLDLGRFVHIYIIITG-IETDSIVTNALIDMYAKCGHLQCAKIVFDRMVDKNVVSWTCMVNAYANHGLIDYALELFNQMPIKNVVSWNSIIWCHVQEGQYSEAVELFRRMCISGVMPEEATLVSILSSCSHMGDLALGKEAHVFISDNNIAVS------VTLYNSLIDMYAKCGALQTARDIFFAMPEKNVVSWNIIIGALALHGFGEDAIEMFEKMQENGLCPDEITFTGLLSACSHSGLVDSGQYYFDMMST-FGISPDIAHYACMVDLLGRWGLLGEAMTLIQKMPMKPDVVVWGALLGACRTYGNLEIGRPIMKQLLELGRYDSGLYVLLSNMYSESQRWDDMKKIRKIMDESGIKKCRAISFIEIDGCCHQFMVDDKRHGASTRIYSMLDQLMYHLK 1791
            ++ +HA +I  G ++++    +L+   S C + E G                           L  A  LF  +P+ ++  +N ++ G++  D    +L  +  M   G   NE++   V+ ACS      K V VH+   K    S   + +A +  Y  C  +  A+++FD++ DR +VSWNS+I  + + G   E + +FQ M    VE D  TL S++S  +    + +G+ VH  ++    +  D I++NA +DMYAKC  ++ A+ +FD M  +NV++ T M++ YA       A  +F +M  +NVVSWN++I  + Q G+  EA+ LF  +    V P   +  +IL +C+ + +L LG +AHV +  +           + + NSLIDMY KCG ++    +F  M E++ VSWN +I   A +G+G +A+E+F +M E+G  PD IT  G+LSAC H+G V+ G++YF  M+  FG++P   HY CMVDLLGR G L EA ++I++MPM+PD V+WG+LL AC+ + N+ +G+ + ++LLE+   +SG YVLLSNMY+E  +W+D+  +RK M + G+ K    S+I+I G  H FMV DK H    +I+S+LD L+  ++
Sbjct:   39 VRYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQGHDHVFMVKDKSHPRKKQIHSLLDILIAEMR 669          
BLAST of rna-TanjilR_12973 vs. DB:Swiss
Match: PP249_ARATH (Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H56 PE=3 SV=1)

HSP 1 Score: 380.178 bits (975), Expect = 2.286e-120
Identity = 223/609 (36.62%), Postives = 343/609 (56.32%), Query Frame = 1
Query:   19 LHAQIILHGLTDQVLTLGKLVSFCSTHEQGDLRYAHLLFDQIPQPNKFMYNHLIRGYSNSDDPTMSL-LLYRQMVSAGLYPNEFTMPFVVKACSFKPSYRKIVIVHANAIKLGMGSHACVQNAFLSAYVACRLIQSARKLFDDISDRTLVSWNSMIAGYGRMGCCKEVILLFQEMQNLGVELDVFTXXXXXXXXXKHGNLDLGRFVHIYIIITGIETDSIVTNALIDMYAKCGHLQCAKIVFDRMVDKNVVSWTCMVNAYANHGLIDYALELFNQMPIKNVVSWNSIIWCHVQEGQYSEAVELFRRM-CISGVMPEEATLVSILSSCSHMGDLALGKEAHVFISDNNIAVSVTLYNSLIDMYAKCGALQTARDIFFAMPEKNVVSWNIIIGALALHGFGEDAIEMFEKMQENGLCPDEITFTGLLSACSHSGLVDSG-QYYFDMMSTFGISPDIAHYACMVDLLGRWGLLGEAMTLIQKMPMKPDVVVWGALLGACRTYGNLEIGRPIMKQLLELGRYDSGLYVLLSNMYSESQRWDDMKKIRKIMDESGIKKCRAISFIEIDGCCHQFMVDDKRHGASTRIYSMLDQLMYHLKFVGYLCKPSDDVEDI 1836
            +H  I+  G    +     LV F +  E G+L  A  +FD++ + N   +  +I GY+  D    ++ L +R +    + PN  TM  V+ AC+          V+A     G+  +  + +A +  Y+ C  I  A++LFD+     L   N+M + Y R G  +E + +F  M + GV  D  +++S +S  S+  N+  G+  H Y++  G E+   + NALIDMY KC     A  +FDRM +K VV+W  +V  Y  +G +D A E F  MP KN+VSWN+II   VQ   + EA+E+F  M    GV  +  T++SI S+C H+G L L K  + +I  N I + V L  +L+DM+++CG  ++A  IF ++  ++V +W   IGA+A+ G  E AIE+F+ M E GL PD + F G L+ACSH GLV  G + ++ M+   G+SP+  HY CMVDLLGR GLL EA+ LI+ MPM+P+ V+W +LL ACR  GN+E+     +++  L    +G YVLLSN+Y+ + RW+DM K+R  M E G++K    S I+I G  H+F   D+ H     I +MLD++      +G++   S+ + D+
Sbjct:  156 IHGLIVKMGYAKDLFVQNSLVHFYA--ECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDV 762          

HSP 2 Score: 241.506 bits (615), Expect = 1.897e-68
Identity = 168/558 (30.11%), Postives = 270/558 (48.39%), Query Frame = 1
Query:    7 QLKLLHAQIILHGLTDQVLTLGKLVS-FCSTHEQGDLRYAHLLFDQIPQPNK-FMYNHLIRGYSNSDDPTMSLLLYRQMVSAGLYPNEFTMPFVVKACSFKPSYRKIVIVHANAIKLGMGSHACVQNAFLSAYVACRLIQSARKLFDDISDRTLVSWNSMIAGYGRMGCCKEVI-LLFQEMQNLGVELDVFTXXXXXXXXXKHGNLDLGRFVHIYIIITGIETDSIVTNALIDMYAKCGHLQCAKIVFDRMVDKNVVSWTCMVNAYANHGLIDYALELFNQMPIKNVVSWNSIIWCHVQEGQYSEAVELFRRMCISGVMPEEATLVSILSSCSHMGDLALGKEAHVFISDNNIAVSVTLYNSLIDMYAKC-------------------------------GALQTARDIFFAMPEKNVVSWNIIIGALALHGFGEDAIEMFEKMQ-ENGLCPDEITFTGLLSACSHSGLVDSGQYYFDMMSTFGISPDIAHYACMVDLLGRWGLLGEAMTLIQKMPMKPDVVVWGALLGACRTYGNLEIGRPIMKQLLELGRYDSGL 1575
            +LK+ H  +   GL + V T+ KLV+  C    +  L +A  +F+        FMYN LIRGY++S     ++LL+ +M+++G+ P+++T PF + AC+   +    + +H   +K+G      VQN+ +  Y  C  + SARK+FD++S+R +VSW SMI GY R    K+ + L F+ +++  V  +  T+V ++S  +K  +L+ G  V+ +I  +GIE + ++ +AL+DMY KC  +  AK +FD     N+     M + Y   GL   AL +FN                                M  SGV P+  +++S +SSCS + ++  GK  H ++  N       + N+LIDMY KC                               G +  A + F  MPEKN+VSWN II  L      E+AIE+F  MQ + G+  D +T   + SAC H G +D  ++ +  +   GI  D+     +VD+  R G    AM++   +  + DV  W A +GA    GN E    +   ++E G    G+
Sbjct:   47 ELKMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNL-------------------------------MMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNR-DVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGV 572          
BLAST of rna-TanjilR_12973 vs. DB:Swiss
Match: PP224_ARATH (Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H43 PE=2 SV=1)

HSP 1 Score: 368.237 bits (944), Expect = 1.614e-117
Identity = 199/612 (32.52%), Postives = 342/612 (55.88%), Query Frame = 1
Query:    7 QLKLLHAQIILHGLTDQVLTLGKLVSFCSTHEQGDLRYAHLLFDQIPQPNKFMYNHLIRGYSNSDDPTMSLLLYRQMVSAGLYPNEFTMPFVVKACSFKPSYRKIVIVHANAIKLGMGSHACVQNAFLSAYVACRLIQSARKLFD--DISDRTLVSWNSMIAGYGRMGCCKEVILLFQEMQNLGVELDVFTXXXXXXXXXKHGNLDLGRFVHIYIIITGIETDSIVTNALIDMYAKCGHLQCAKIVFDRMVDKNVVSWTCMVNAYANHGLIDYALELFNQMPIKNVVSWNSIIWCHVQEGQYSEAVELFRRMCISGVMPEEATLVSILSSCSHMGDLALGKEAHVFISDNNIAVSVTLYNSLIDMYAKCGALQTARDIFFAMPEKNVVSWNIIIGALALHGFGEDAIEMFEKMQENGLCPDEITFTGLLSACSHSGLVDSGQYYFDMMSTFGISPDIAHYACMVDLLGRWGLLGEAMTLIQKMPMKPDVVVWGALLGACRTYGNLEIGRPIMKQLLELGRYDSGLYVLLSNMYSESQRWDDMKKIRKIMDESGIKKCRAISFIEIDGCCHQFMVDDKRHGASTRIYSMLDQLMYHLKFVGYLCKPSDDVEDI 1836
            QLK +HA++++ GL      + KL+   S+   GD+ +A  +FD +P+P  F +N +IRGYS ++    +LL+Y  M  A + P+ FT P ++KACS     +    VHA   +LG  +   VQN  ++ Y  CR + SAR +F+   + +RT+VSW ++++ Y + G   E + +F +M+ + V+ D   LVS+L+  +   +L  GR +H  ++  G+E +  +  +L  MYAKCG +  AKI+FD+                               M   N++ WN++I  + + G   EA+++F  M    V P+  ++ S +S+C+ +G L   +  + ++  ++    V + ++LIDM+AKCG+++ AR +F    +++VV W+ +I    LHG   +AI ++  M+  G+ P+++TF GLL AC+HSG+V  G ++F+ M+   I+P   HYAC++DLLGR G L +A  +I+ MP++P V VWGALL AC+ + ++E+G    +QL  +   ++G YV LSN+Y+ ++ WD + ++R  M E G+ K    S++E+ G    F V DK H     I   ++ +   LK  G++      + D+
Sbjct:   36 QLKQIHARLLVLGLQFSGFLITKLIHASSSF--GDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDK-------------------------------MKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDL 614          

HSP 2 Score: 185.652 bits (470), Expect = 3.458e-49
Identity = 121/425 (28.47%), Postives = 206/425 (48.47%), Query Frame = 1
Query:  214 SLLLYRQMVSAGLYPNEFTMPFVVKACSFKPSYRKIVIVHANAIKLGMGSHACVQNAFLSAYVACRLIQSARKLFDDISDRTLVSWNSMIAGYGRMGCCKEVILLFQEMQNLGVELDVFTXXXXXXXXXKHGNLDLGRFVHIYIIITGIETDSIVTNALIDMYAKCGHLQCAKIVFDRMVDKNVVSWTCMVNAYANHGLIDYALELFNQMPIKNVVSWNSIIWCHVQEGQYSEAVELFRRMCISGVMPEEATLVSILSSCSHMGDLALGKEAHVFISDNNIAVSVTLYNSLIDMYAKCGALQTARDIFFAMPEKNVVSWNIIIGALALHGFGEDAIEMFEKMQENGLCPDEITFTGLLSACSHSGLVDSGQYYFDMMSTFGISPDIAHYACMVDLLGRWGLLGEAMTLIQKMPMKPDVVVWGALL 1488
            S LLY    ++G++ + F    +  A + K   ++I   HA  + LG+     +    + A  +   I  AR++FDD+    +  WN++I GY R    ++ +L++  MQ   V  D FT   LL   S   +L +GRFVH  +   G + D  V N LI +YAKC  L  A+ VF+ +                              +P + +VSW +I+  + Q G+  EA+E+F +M    V P+   LVS+L++ + + DL  G+  H  +    + +   L  SL  MYAKCG + TA+ +F  M   N++ WN +I   A +G+  +AI+MF +M    + PD I+ T  +SAC+  G ++  +  ++ +       D+   + ++D+  + G + E   L+    +  DVVVW A++
Sbjct:    9 SPLLY---TNSGIHSDSFYASLIDSA-THKAQLKQI---HARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGL-----------------------------PLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSV-EGARLVFDRTLDRDVVVWSAMI 396          
BLAST of rna-TanjilR_12973 vs. DB:Swiss
Match: PPR75_ARATH (Pentatricopeptide repeat-containing protein At1g50270 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E42 PE=2 SV=1)

HSP 1 Score: 362.844 bits (930), Expect = 1.506e-116
Identity = 215/617 (34.85%), Postives = 335/617 (54.29%), Query Frame = 1
Query:    7 QLKLLHAQIILHGL--TDQVLTLGKLVSFCSTHEQGDLRYAHLLFDQIPQPNKFMYNHLIRGYSN--SDDPTMSLLLYRQMVSAGLYPNEFTMPFVVKACSFKPSYRKIVIVHANAIKLGMGSHACVQNAFLSAYVACRLIQSARKLFDDISDRTLVSWNSMIAGYGRMGCCKEVILLFQEMQNLGVELDVFTXXXXXXXXXKHGNLDLGRFVHIYIIITG-IETDSIVTNALIDMYAKCGHLQCAKIVFDRMVDKNVVSWTCMVNAYANHGLIDYALELFNQMPIKNVVSWNSIIWCHVQEGQYSEAVELFRRMCISGVMPEEATLVSILSSCSHMGDLALGKEAHVFISDNNIAVSVTLYNSLIDMYAKCGALQTARDIFFAMPEKNVVSWNIIIGALALHGFGEDAIEMFEKMQENGLCPDEITFTGLLSACSHSGLVDSGQYYF-DMMSTFGISPDIAHYACMVDLLGRWGLLGEAMTLIQKMPMKPDVVVWGALLGACRTYGNLEIGRPIMKQLLELGRYDSGLYVLLSNMYSESQRWDDMKKIRKIMDESGIKKCRAISFIEIDG-CCHQFMVDDKRHGASTRIYSMLDQLMYHLKFVGYLCKPSDDVEDI 1836
             LK +H  ++   +  T + L L +L+  C T      RYA  L  Q+   +  +++ LI  +S   + +  +S L YR M   G+ P+  T P ++KA  FK         HA+ +K G+ S   V+N+ +S Y +  L   A +LFD   D+ +V+W +MI G+ R G   E ++ F EM+  GV  +  T+VS+L  + K  ++  GR VH   + TG ++ D  + ++L+DMY KC                     +C           D A ++F++MP +NVV+W ++I  +VQ   + + + +F  M  S V P E TL S+LS+C+H+G L  G+  H ++  N+I ++ T   +LID+Y KCG L+ A  +F  + EKNV +W  +I   A HG+  DA ++F  M  + + P+E+TF  +LSAC+H GLV+ G+  F  M   F + P   HYACMVDL GR GLL EA  LI++MPM+P  VVWGAL G+C  + + E+G+    ++++L    SG Y LL+N+YSESQ WD++ ++RK M +  + K    S+IE+ G  C     DDK+   S  +Y  LD        VG   +  D++ED+
Sbjct:   16 HLKQIHCLLLTSPIFYTRRDLFLSRLLRRCCT-AATQFRYARRLLCQLQTLSIQLWDSLIGHFSGGITLNRRLSFLAYRHMRRNGVIPSRHTFPPLLKAV-FKLRDSNPFQFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKC---------------------SCY----------DDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGALFGSCLLHKDYELGKYAASRVIKLQPSHSGRYTLLANLYSESQNWDEVARVRKQMKDQQVVKSPGFSWIEVKGKLCEFIAFDDKKPLESDDLYKTLDT-------VGVQMRLPDELEDV 592          
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_12973 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
PP169_ARATH1.268e-15039.93Pentatricopeptide repeat-containing protein At2g22... [more]
PP175_ARATH1.307e-14838.91Pentatricopeptide repeat-containing protein At2g29... [more]
PP235_ARATH4.066e-13936.75Putative pentatricopeptide repeat-containing prote... [more]
PP311_ARATH8.734e-13636.64Pentatricopeptide repeat-containing protein At4g14... [more]
PPR21_ARATH2.335e-13435.65Pentatricopeptide repeat-containing protein At1g08... [more]
PP261_ARATH4.281e-13435.79Pentatricopeptide repeat-containing protein At3g29... [more]
PP151_ARATH9.020e-12834.87Pentatricopeptide repeat-containing protein At2g13... [more]
PP249_ARATH2.286e-12036.62Pentatricopeptide repeat-containing protein At3g22... [more]
PP224_ARATH1.614e-11732.52Pentatricopeptide repeat-containing protein At3g12... [more]
PPR75_ARATH1.506e-11634.85Pentatricopeptide repeat-containing protein At1g50... [more]
back to top
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 253..282
e-value: 7.5E-6
score: 25.6
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 287..319
e-value: 2.8E-5
score: 22.0
coord: 388..422
e-value: 2.1E-8
score: 31.8
coord: 423..457
e-value: 3.1E-4
score: 18.7
coord: 55..88
e-value: 6.3E-6
score: 24.0
coord: 155..189
e-value: 2.5E-7
score: 28.5
coord: 256..282
e-value: 1.8E-5
score: 22.6
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 460..484
e-value: 0.23
score: 11.8
coord: 54..84
e-value: 8.9E-4
score: 19.4
coord: 155..185
e-value: 2.8E-8
score: 33.5
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 385..433
e-value: 1.0E-12
score: 48.0
coord: 284..331
e-value: 1.0E-9
score: 38.4
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 488..518
score: 5.908
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 153..187
score: 10.83
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 355..385
score: 8.879
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 421..455
score: 9.931
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 254..284
score: 9.657
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 188..222
score: 6.073
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 223..253
score: 8.561
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 52..86
score: 10.348
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 285..319
score: 11.827
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 456..486
score: 7.136
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 320..354
score: 5.009
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 386..420
score: 11.915
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 522..556
score: 7.947
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 122..152
score: 5.7
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 103..215
e-value: 4.4E-17
score: 64.6
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 361..583
e-value: 2.0E-43
score: 150.9
coord: 2..101
e-value: 3.5E-11
score: 45.0
coord: 216..360
e-value: 1.9E-30
score: 108.3

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_12973_La_Tanjil_v1.0 ID=rna-TanjilR_12973_La_Tanjil_v1.0; Name=rna-TanjilR_12973; organism=Lupinus angustifolius; type=mRNA; length=1842bp
ATGAGACAACTCAAACTCCTTCATGCCCAAATCATCCTCCATGGCCTAAC
TGACCAAGTCCTCACCTTAGGCAAACTAGTCTCTTTTTGCTCCACTCATG
AACAAGGAGATCTACGCTACGCACACCTCCTGTTCGATCAAATTCCCCAA
CCAAATAAATTCATGTACAATCATCTAATACGGGGCTATTCAAATAGTGA
TGACCCAACAATGTCTTTGTTGCTCTACCGCCAGATGGTGTCTGCTGGCC
TTTACCCGAATGAATTCACTATGCCCTTTGTTGTCAAAGCTTGTTCTTTC
AAACCCTCCTATAGGAAAATTGTTATCGTTCATGCTAATGCTATTAAGCT
TGGAATGGGTTCCCATGCCTGTGTGCAAAATGCTTTCTTGAGTGCTTATG
TTGCTTGTCGTTTGATACAAAGTGCGCGCAAACTATTTGATGATATTAGT
GATAGGACTCTGGTCTCATGGAATTCGATGATTGCTGGGTACGGTAGAAT
GGGCTGTTGCAAAGAAGTGATTTTGTTGTTTCAGGAAATGCAGAATCTGG
GTGTGGAACTTGATGTGTTCACCTTGGTTAGCTTGCTTTCTGTTTCCTCT
AAGCATGGTAATTTGGATTTGGGTCGATTTGTTCATATTTATATCATTAT
TACCGGAATTGAAACTGATTCAATCGTGACGAATGCTCTCATAGATATGT
ACGCCAAGTGTGGGCATTTGCAATGTGCTAAAATTGTTTTTGATCGAATG
GTTGATAAAAATGTAGTTTCATGGACTTGTATGGTTAATGCATATGCTAA
CCATGGGCTTATTGATTATGCTCTGGAGTTGTTTAATCAGATGCCAATAA
AGAATGTGGTTTCTTGGAATTCAATAATTTGGTGTCATGTTCAAGAAGGA
CAATACTCCGAGGCCGTGGAACTTTTCCGCAGGATGTGTATTTCAGGTGT
GATGCCTGAGGAGGCTACTCTTGTTAGCATTCTTTCATCCTGTAGTCACA
TGGGTGATCTGGCTTTGGGAAAAGAAGCACATGTTTTCATTTCCGATAAT
AATATTGCAGTGAGTGTGACTCTATATAACTCCCTAATAGACATGTACGC
GAAATGTGGTGCTCTTCAGACTGCCAGGGATATCTTCTTTGCGATGCCAG
AGAAGAATGTAGTGTCATGGAACATTATCATTGGGGCACTTGCTTTACAT
GGTTTTGGAGAAGACGCAATTGAGATGTTTGAGAAGATGCAAGAGAATGG
GCTCTGTCCTGATGAGATTACCTTCACAGGTTTACTTTCTGCTTGTAGTC
ACAGTGGTCTTGTGGATAGTGGGCAATATTACTTTGACATGATGAGTACT
TTTGGGATTTCTCCTGATATTGCACATTATGCATGCATGGTTGATCTTTT
AGGGCGTTGGGGACTCTTAGGAGAAGCAATGACCCTAATACAAAAGATGC
CTATGAAACCTGATGTTGTGGTTTGGGGTGCTTTGCTTGGTGCTTGTAGA
ACCTATGGGAATCTAGAGATTGGTAGGCCAATCATGAAGCAGTTGTTGGA
GCTAGGAAGATATGATTCAGGGCTTTATGTGCTTCTCTCAAACATGTATT
CAGAATCTCAAAGATGGGATGACATGAAAAAGATCAGGAAAATAATGGAT
GAAAGTGGGATCAAAAAGTGCAGAGCAATTAGCTTCATTGAAATCGATGG
GTGTTGCCATCAATTTATGGTGGATGACAAAAGGCATGGAGCTTCCACCA
GGATATACTCCATGCTGGATCAGTTAATGTATCATTTAAAATTCGTAGGA
TATCTATGTAAACCTTCTGATGATGTAGAAGACATATACTAA
back to top

protein sequence of rna-TanjilR_12973_La_Tanjil_v1.0

>rna-TanjilR_12973_La_Tanjil_v1.0 ID=rna-TanjilR_12973_La_Tanjil_v1.0; Name=rna-TanjilR_12973_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=613bp
MRQLKLLHAQIILHGLTDQVLTLGKLVSFCSTHEQGDLRYAHLLFDQIPQ
PNKFMYNHLIRGYSNSDDPTMSLLLYRQMVSAGLYPNEFTMPFVVKACSF
KPSYRKIVIVHANAIKLGMGSHACVQNAFLSAYVACRLIQSARKLFDDIS
DRTLVSWNSMIAGYGRMGCCKEVILLFQEMQNLGVELDVFTLVSLLSVSS
KHGNLDLGRFVHIYIIITGIETDSIVTNALIDMYAKCGHLQCAKIVFDRM
VDKNVVSWTCMVNAYANHGLIDYALELFNQMPIKNVVSWNSIIWCHVQEG
QYSEAVELFRRMCISGVMPEEATLVSILSSCSHMGDLALGKEAHVFISDN
NIAVSVTLYNSLIDMYAKCGALQTARDIFFAMPEKNVVSWNIIIGALALH
GFGEDAIEMFEKMQENGLCPDEITFTGLLSACSHSGLVDSGQYYFDMMST
FGISPDIAHYACMVDLLGRWGLLGEAMTLIQKMPMKPDVVVWGALLGACR
TYGNLEIGRPIMKQLLELGRYDSGLYVLLSNMYSESQRWDDMKKIRKIMD
ESGIKKCRAISFIEIDGCCHQFMVDDKRHGASTRIYSMLDQLMYHLKFVG
YLCKPSDDVEDIY
back to top

mRNA from alignment at Chr_LG17-CM007377.1:1944983..1946824-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_12973_La_Tanjil_v1.0 ID=rna-TanjilR_12973_La_Tanjil_v1.0; Name=rna-TanjilR_12973; organism=Lupinus angustifolius; type=mRNA; length=1842bp; location=Sequence derived from: Chr_LG17-CM007377.1:1944983..1946824- (Lupinus angustifolius
ATGAGACAACTCAAACTCCTTCATGCCCAAATCATCCTCCATGGCCTAAC TGACCAAGTCCTCACCTTAGGCAAACTAGTCTCTTTTTGCTCCACTCATG AACAAGGAGATCTACGCTACGCACACCTCCTGTTCGATCAAATTCCCCAA CCAAATAAATTCATGTACAATCATCTAATACGGGGCTATTCAAATAGTGA TGACCCAACAATGTCTTTGTTGCTCTACCGCCAGATGGTGTCTGCTGGCC TTTACCCGAATGAATTCACTATGCCCTTTGTTGTCAAAGCTTGTTCTTTC AAACCCTCCTATAGGAAAATTGTTATCGTTCATGCTAATGCTATTAAGCT TGGAATGGGTTCCCATGCCTGTGTGCAAAATGCTTTCTTGAGTGCTTATG TTGCTTGTCGTTTGATACAAAGTGCGCGCAAACTATTTGATGATATTAGT GATAGGACTCTGGTCTCATGGAATTCGATGATTGCTGGGTACGGTAGAAT GGGCTGTTGCAAAGAAGTGATTTTGTTGTTTCAGGAAATGCAGAATCTGG GTGTGGAACTTGATGTGTTCACCTTGGTTAGCTTGCTTTCTGTTTCCTCT AAGCATGGTAATTTGGATTTGGGTCGATTTGTTCATATTTATATCATTAT TACCGGAATTGAAACTGATTCAATCGTGACGAATGCTCTCATAGATATGT ACGCCAAGTGTGGGCATTTGCAATGTGCTAAAATTGTTTTTGATCGAATG GTTGATAAAAATGTAGTTTCATGGACTTGTATGGTTAATGCATATGCTAA CCATGGGCTTATTGATTATGCTCTGGAGTTGTTTAATCAGATGCCAATAA AGAATGTGGTTTCTTGGAATTCAATAATTTGGTGTCATGTTCAAGAAGGA CAATACTCCGAGGCCGTGGAACTTTTCCGCAGGATGTGTATTTCAGGTGT GATGCCTGAGGAGGCTACTCTTGTTAGCATTCTTTCATCCTGTAGTCACA TGGGTGATCTGGCTTTGGGAAAAGAAGCACATGTTTTCATTTCCGATAAT AATATTGCAGTGAGTGTGACTCTATATAACTCCCTAATAGACATGTACGC GAAATGTGGTGCTCTTCAGACTGCCAGGGATATCTTCTTTGCGATGCCAG AGAAGAATGTAGTGTCATGGAACATTATCATTGGGGCACTTGCTTTACAT GGTTTTGGAGAAGACGCAATTGAGATGTTTGAGAAGATGCAAGAGAATGG GCTCTGTCCTGATGAGATTACCTTCACAGGTTTACTTTCTGCTTGTAGTC ACAGTGGTCTTGTGGATAGTGGGCAATATTACTTTGACATGATGAGTACT TTTGGGATTTCTCCTGATATTGCACATTATGCATGCATGGTTGATCTTTT AGGGCGTTGGGGACTCTTAGGAGAAGCAATGACCCTAATACAAAAGATGC CTATGAAACCTGATGTTGTGGTTTGGGGTGCTTTGCTTGGTGCTTGTAGA ACCTATGGGAATCTAGAGATTGGTAGGCCAATCATGAAGCAGTTGTTGGA GCTAGGAAGATATGATTCAGGGCTTTATGTGCTTCTCTCAAACATGTATT CAGAATCTCAAAGATGGGATGACATGAAAAAGATCAGGAAAATAATGGAT GAAAGTGGGATCAAAAAGTGCAGAGCAATTAGCTTCATTGAAATCGATGG GTGTTGCCATCAATTTATGGTGGATGACAAAAGGCATGGAGCTTCCACCA GGATATACTCCATGCTGGATCAGTTAATGTATCATTTAAAATTCGTAGGA TATCTATGTAAACCTTCTGATGATGTAGAAGACATATACTAA
back to top

Coding sequence (CDS) from alignment at Chr_LG17-CM007377.1:1944983..1946824-

>rna-TanjilR_12973_La_Tanjil_v1.0 ID=rna-TanjilR_12973_La_Tanjil_v1.0; Name=rna-TanjilR_12973; organism=Lupinus angustifolius; type=CDS; length=1842bp; location=Sequence derived from: Chr_LG17-CM007377.1:1944983..1946824- (Lupinus angustifolius
ATGAGACAACTCAAACTCCTTCATGCCCAAATCATCCTCCATGGCCTAAC
TGACCAAGTCCTCACCTTAGGCAAACTAGTCTCTTTTTGCTCCACTCATG
AACAAGGAGATCTACGCTACGCACACCTCCTGTTCGATCAAATTCCCCAA
CCAAATAAATTCATGTACAATCATCTAATACGGGGCTATTCAAATAGTGA
TGACCCAACAATGTCTTTGTTGCTCTACCGCCAGATGGTGTCTGCTGGCC
TTTACCCGAATGAATTCACTATGCCCTTTGTTGTCAAAGCTTGTTCTTTC
AAACCCTCCTATAGGAAAATTGTTATCGTTCATGCTAATGCTATTAAGCT
TGGAATGGGTTCCCATGCCTGTGTGCAAAATGCTTTCTTGAGTGCTTATG
TTGCTTGTCGTTTGATACAAAGTGCGCGCAAACTATTTGATGATATTAGT
GATAGGACTCTGGTCTCATGGAATTCGATGATTGCTGGGTACGGTAGAAT
GGGCTGTTGCAAAGAAGTGATTTTGTTGTTTCAGGAAATGCAGAATCTGG
GTGTGGAACTTGATGTGTTCACCTTGGTTAGCTTGCTTTCTGTTTCCTCT
AAGCATGGTAATTTGGATTTGGGTCGATTTGTTCATATTTATATCATTAT
TACCGGAATTGAAACTGATTCAATCGTGACGAATGCTCTCATAGATATGT
ACGCCAAGTGTGGGCATTTGCAATGTGCTAAAATTGTTTTTGATCGAATG
GTTGATAAAAATGTAGTTTCATGGACTTGTATGGTTAATGCATATGCTAA
CCATGGGCTTATTGATTATGCTCTGGAGTTGTTTAATCAGATGCCAATAA
AGAATGTGGTTTCTTGGAATTCAATAATTTGGTGTCATGTTCAAGAAGGA
CAATACTCCGAGGCCGTGGAACTTTTCCGCAGGATGTGTATTTCAGGTGT
GATGCCTGAGGAGGCTACTCTTGTTAGCATTCTTTCATCCTGTAGTCACA
TGGGTGATCTGGCTTTGGGAAAAGAAGCACATGTTTTCATTTCCGATAAT
AATATTGCAGTGAGTGTGACTCTATATAACTCCCTAATAGACATGTACGC
GAAATGTGGTGCTCTTCAGACTGCCAGGGATATCTTCTTTGCGATGCCAG
AGAAGAATGTAGTGTCATGGAACATTATCATTGGGGCACTTGCTTTACAT
GGTTTTGGAGAAGACGCAATTGAGATGTTTGAGAAGATGCAAGAGAATGG
GCTCTGTCCTGATGAGATTACCTTCACAGGTTTACTTTCTGCTTGTAGTC
ACAGTGGTCTTGTGGATAGTGGGCAATATTACTTTGACATGATGAGTACT
TTTGGGATTTCTCCTGATATTGCACATTATGCATGCATGGTTGATCTTTT
AGGGCGTTGGGGACTCTTAGGAGAAGCAATGACCCTAATACAAAAGATGC
CTATGAAACCTGATGTTGTGGTTTGGGGTGCTTTGCTTGGTGCTTGTAGA
ACCTATGGGAATCTAGAGATTGGTAGGCCAATCATGAAGCAGTTGTTGGA
GCTAGGAAGATATGATTCAGGGCTTTATGTGCTTCTCTCAAACATGTATT
CAGAATCTCAAAGATGGGATGACATGAAAAAGATCAGGAAAATAATGGAT
GAAAGTGGGATCAAAAAGTGCAGAGCAATTAGCTTCATTGAAATCGATGG
GTGTTGCCATCAATTTATGGTGGATGACAAAAGGCATGGAGCTTCCACCA
GGATATACTCCATGCTGGATCAGTTAATGTATCATTTAAAATTCGTAGGA
TATCTATGTAAACCTTCTGATGATGTAGAAGACATATACTAA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_rpt
IPR011990TPR-like_helical_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding