rna-TanjilR_27417
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_27417 vs. DB:Swiss
Match: CSLG1_ARATH (Cellulose synthase-like protein G1 OS=Arabidopsis thaliana OX=3702 GN=CSLG1 PE=2 SV=1) HSP 1 Score: 181.415 bits (459), Expect = 7.733e-46 Identity = 105/339 (30.97%), Postives = 174/339 (51.33%), Query Frame = 3 Query: 2358 R*ADFSVTLIQLVHQFSCSKKCIYIYNV-W-LQVGFLYDSVVEDFLTGFFLHCKGWTSVFCEPSNPQFLGTATTNLNDVLIQGSRWYSGLFENGISRFSPLIYGPPRMPLLQSLCFAELTYFPLYCLPLWCFAIIPQICLLNGIPLYPKVT-------IMHIFSSYTITIFF*SLSLLQVSDRXXXXXXXXXXXXXXKHLQEVFLTGGTMHKWINEQRIWMMKSITCHLYGCLDAVLKKIGIREASFLPTNKV-EDDEQSMLYQMDKYDFQASNTFIVPMLALLSINVSCFIGGVYRVSLVGDWDKMFIQLFLAAFIITVNYPIIEGLVVRKDKGCISK 3344 R AD S+ ++ CIY YN W ++GF Y S+VED+ TGF LHC+GW SVFC P F G + L D++ Q RW GLFE S++SP+ YG + LL L + + P + +PL + ++PQ+ L++G+ ++PK + I+ F +Y + L + L GGT KW N+QR+ M+K ++ +G ++ +LK + + F T+K +DDEQ Y+ + +DF S++ +P+ + +N+ F+ G+Y + G +++++L L +F + PI +V+RKD G +SK Sbjct: 404 RIADKSIKAQDVLSLAHNVAGCIYEYNTNWGSKIGFRYGSLVEDYYTGFMLHCEGWRSVFCNPKKAAFYGDSPKCLVDLVGQQIRWAVGLFEMSFSKYSPITYGIKSLDLLMGLGYCNSPFKPFWSIPLTVYGLLPQLALISGVSVFPKASDPWFWLYIILFFGAYA------------------------------QDLSDFLLEGGTYRKWWNDQRMLMIKGLSSFFFGFIEFILKTLNLSTPKFNVTSKANDDDEQRKRYEQEIFDFGTSSSMFLPLTTVAIVNLLAFVWGLYGILFCG--GELYLELMLVSFAVVNCLPIYGAMVLRKDDGKLSK 710 HSP 2 Score: 140.969 bits (354), Expect = 7.111e-33 Identity = 77/205 (37.56%), Postives = 120/205 (58.54%), Query Frame = 1 Query: 28 LNFCHVQKWLLIINRLHMFLHSTALFFMFYYRLSFLFQNQVSRTSYLLPWLLVFASEIILSFIWILGQAYRWRPVSRTVFPERL---PEDDKLPAIDVFICTADPIKEPTVVVMNTVLSAMSLDYPADNLHVYLSDDGGSPLTLLGMRVAWKFARWWLPFCRRYRIKSRCPKAYFSGLENDDGDFARSSVYMADKQKIKVSLILQ 633 L+ CH + I R++ H+ + + Y+ + L V+ + L+ LL+ S+I+L+F+W + R PV RT PE+ PED P +DVFICTADP KEP ++V+NT LS M+ +YP+D + VY+SDDGGS LT + A KF++ WLPFC++ ++ R P+ YFS + D A + M + K +V +++ Sbjct: 14 LHTCHPCR-RTIPYRIYAIFHTCGIIALMYHHVHSL----VTANNTLITCLLLL-SDIVLAFMWATTTSLRLNPVHRTECPEKYAAKPED--FPKLDVFICTADPYKEPPMMVVNTALSVMAYEYPSDKISVYVSDDGGSSLTFFALIEAAKFSKQWLPFCKKNNVQDRSPEVYFSSESHSRSDEAENLKMMYEDMKSRVEHVVE 210 HSP 3 Score: 91.6633 bits (226), Expect = 1.803e-17 Identity = 41/74 (55.41%), Postives = 54/74 (72.97%), Query Frame = 1 Query: 1489 LRVSSVMSNAPYILVLDCDMFCNDPSSARYAMCFHLDPKISSSLAFVQFPQKFHNISKNDIYDSQLRSLFTVKI 1710 LRVS VM+N+P IL LDCDM+ NDP++ A+C+ DP+I S L +VQFPQKF ISKNDIY + + LF + + Sbjct: 289 LRVSGVMTNSPIILTLDCDMYSNDPATLVRALCYLTDPEIKSGLGYVQFPQKFLGISKNDIYACENKRLFIINM 362
BLAST of rna-TanjilR_27417 vs. DB:Swiss
Match: CSLG2_ARATH (Cellulose synthase-like protein G2 OS=Arabidopsis thaliana OX=3702 GN=CSLG2 PE=2 SV=1) HSP 1 Score: 180.644 bits (457), Expect = 1.099e-45 Identity = 108/339 (31.86%), Postives = 180/339 (53.10%), Query Frame = 3 Query: 2349 GGKR*ADFSVT---LIQLVHQFS-CSKKCIYIYNVWLQVGFLYDSVVEDFLTGFFLHCKGWTSVFCEPSNPQFLGTATTNLNDVLIQGSRWYSGLFENGISRFSPLIYGPPRMPLLQSLCFAELTYFPLYCLPLWCFAIIPQICLLNGIPLYPKVTIMHIFSSYTITIFF*SLSLLQVSDRXXXXXXXXXXXXXXKHLQEVFLTGGTMHKWINEQRIWMMKSITCHLYGCLDAVLKKIGIREASFLPTNKVEDD-EQSMLYQMDKYDFQASNTFIVPMLALLSINVSCFIGGVYRVSLVGDWDKMFIQLFLAAFIITVNYPIIEGLVVRKDKGCISKLV 3350 G R AD + ++ L H + C+ +C N ++GF Y S+VED+ TGF LHC+GW S+FC P+ F G + L DV+ Q RW GL E SR++PL YG + LL SL + ++P +C+PL + I+PQ+ L++G+ ++PK SD +F +++ +FL + L + L GGT KW N+QR+WM++ ++ +G + LK + + + T+K DD EQ Y+ + +DF S++ +P+ + +N+ F+ G+Y + G + ++L LA+F + PI E +V+R D G + K + Sbjct: 391 GPNRIADKPIKAQDILALAHDVAGCNYECNT--NWGSKIGFRYGSLVEDYFTGFMLHCEGWRSIFCSPTKAAFYGDSPKCLTDVIGQQIRWSVGLLEVAFSRYNPLTYGIKPLSLLMSLGYCHYAFWPFWCIPLVVYGILPQVALIHGVSVFPKA-----------------------SDPWFWLYIILFLGGYAQDLSDFLLEGGTYRKWWNDQRMWMVRGLSSFFFGFTEFTLKTLNLSTQGYNVTSKSNDDNEQMKRYEQEIFDFGPSSSMFLPITTVAIMNLLAFMRGLYGIFTWG--EGPVLELMLASFAVVNCLPIYEAMVLRIDDGKLPKRI 702 HSP 2 Score: 135.191 bits (339), Expect = 3.910e-31 Identity = 75/205 (36.59%), Postives = 120/205 (58.54%), Query Frame = 1 Query: 28 LNFCHVQKWLLIINRLHMFLHSTALFFMFYYRLSFLFQNQVSRTSYLLPWLLVFASEIILSFIWILGQAYRWRPVSRTVFPERL---PEDDKLPAIDVFICTADPIKEPTVVVMNTVLSAMSLDYPADNLHVYLSDDGGSPLTLLGMRVAWKFARWWLPFCRRYRIKSRCPKAYFSGLENDDGDFARSSVYMADKQKIKVSLILQ 633 L+ CH + I R++ H+ + + Y+ + + V+ + L+ LL+ S+I+L+F+W + R P+ RT +PE+ PED P +DVFICTADP KEP ++V+NT LS M+ +YP+ + VY+SDDGGS LTL + A KF++ WLPFC+ ++ R P+ YFS + D A + M + K +V +++ Sbjct: 11 LHTCHPCR-RTIPYRIYAVFHTCGIIALMYHHV----HSIVNANNTLITCLLLL-SDIVLAFMWATTTSLRLNPIHRTEYPEKYAAKPED--FPKLDVFICTADPYKEPPMMVVNTALSVMAYEYPSHKISVYVSDDGGSSLTLFALMEAAKFSKHWLPFCKNNNVQDRSPEVYFSSKSHSSSDEAENLKMMYEDMKSRVEHVVE 207 HSP 3 Score: 92.8189 bits (229), Expect = 9.404e-18 Identity = 40/73 (54.79%), Postives = 56/73 (76.71%), Query Frame = 1 Query: 1489 LRVSSVMSNAPYILVLDCDMFCNDPSSARYAMCFHLDPKISSSLAFVQFPQKFHNISKNDIYDSQLRSLFTVK 1707 LRVS+VM+N+P IL LDCDM+ N+P++ +A+C+ DPKI+ L FVQFPQKF ++KNDIY S+L+ F + Sbjct: 279 LRVSAVMTNSPIILTLDCDMYSNNPTTPLHALCYLSDPKINFDLGFVQFPQKFQGVNKNDIYASELKRPFDIN 351
BLAST of rna-TanjilR_27417 vs. DB:Swiss
Match: CSLG3_ARATH (Cellulose synthase-like protein G3 OS=Arabidopsis thaliana OX=3702 GN=CSLG3 PE=2 SV=2) HSP 1 Score: 168.318 bits (425), Expect = 1.327e-41 Identity = 107/338 (31.66%), Postives = 178/338 (52.66%), Query Frame = 3 Query: 2382 LIQLVHQFSCSKKCIYIYNV-W-LQVGFLYDSVVEDFLTGFFLHCKGWTSVFCEPSNPQFLGTATTNLNDVLIQGSRWYSGLFENGISRFSPLIYGPPRMPLLQSLCFAELTYFPLYCLPLWCFAIIPQICLLNGIPLYPKVTIMHIFSSYTITIFF*SLSLLQVSDRXXXXXXXXXXXXXXKHLQEVFLTGGTMHKWINEQRIWMMKSITCHLYGCLDAVLKKIGIREASFLPTNKVEDD-EQSMLYQMDKYDFQASNTFIVPMLALLSINVSCFIGGVYRVSLVGDWDKMFIQLFLAAFIITVNYPIIEGLVVRKDKGCISKLVATHVILATMILL 3386 ++ L H+ + CIY N W ++GF Y S+VED+ TG+ LHC+GW SVFC P F G + +L DV+ Q RW GL E ISR+SP+ YG M L+ + + + + + LPL + +PQ+ LL ++PK SD +F +++ +FL + + L + L GGT W N+QR+W ++ + HL+G ++ LK + + F T+K DD EQS Y+ + ++F S++ +P+ + +N+ F+ G+Y + G + + ++L LA+F + PI E +V+R D G + K V + T +L+ Sbjct: 434 VLALAHRVA---GCIYELNTNWGSKIGFRYGSLVEDYYTGYRLHCEGWRSVFCRPKRAAFCGDSPKSLIDVVSQQKRWAIGLLEVAISRYSPITYGVKSMGLVTGVGYCQYACWAFWSLPLIVYGFLPQLALLYQSSVFPKS-----------------------SDPWFWLYIVLFLGAYGQDLLDFVLEGGTYGGWWNDQRMWSIRGFSSHLFGFIEFTLKTLNLSTHGFNVTSKANDDEEQSKRYEKEIFEFGPSSSMFLPLTTVAIVNLLAFVWGLYGLFAWG--EGLVLELMLASFAVVNCLPIYEAMVLRIDDGKLPKRVCFVAGILTFVLI 743 HSP 2 Score: 138.272 bits (347), Expect = 4.827e-32 Identity = 73/203 (35.96%), Postives = 118/203 (58.13%), Query Frame = 1 Query: 28 LNFCHVQKWLLIINRLHMFLHSTALFFMFYYRLSFLFQNQVSRTSYLLPWLLVFASEIILSFIWILGQAYRWRPVSRTVFPER-LPEDDKLPAIDVFICTADPIKEPTVVVMNTVLSAMSLDYPADNLHVYLSDDGGSPLTLLGMRVAWKFARWWLPFCRRYRIKSRCPKAYFSGLENDDGDFARSSVYMADKQKIKVSLILQ 633 L+ CH + I R++ H+ + + Y+ + L + + L+ S+I+L+F+W + R++PV RT +PE+ E + P +DVFICTADP KEP ++V+NT LS M+ +YP+D + VY+SDDGGS LTL + A KF++ WLPFC++ ++ R P+ YFS D A + M + K +V +++ Sbjct: 33 LHTCHPCR-RTIPYRIYAVFHTCGIIALMYHHVHSLLTANTTLIT-----SLLLLSDIVLAFMWATTTSLRYKPVRRTEYPEKYAAEPEDFPKLDVFICTADPYKEPPMMVVNTALSVMAYEYPSDKISVYVSDDGGSSLTLFALMEAAKFSKHWLPFCKKNNVQDRSPEVYFSSKLRSRSDEAENIKMMYEDMKSRVEHVVE 229 HSP 3 Score: 93.2041 bits (230), Expect = 6.139e-18 Identity = 41/74 (55.41%), Postives = 52/74 (70.27%), Query Frame = 1 Query: 1489 LRVSSVMSNAPYILVLDCDMFCNDPSSARYAMCFHLDPKISSSLAFVQFPQKFHNISKNDIYDSQLRSLFTVKI 1710 LRVS VM+N+P IL LDCDM+ NDP++ A+C+ DPKI + L FVQFPQ F ISKNDIY + LF + + Sbjct: 308 LRVSGVMTNSPIILTLDCDMYSNDPATPVRALCYLTDPKIKTGLGFVQFPQTFQGISKNDIYACAYKRLFEINM 381
BLAST of rna-TanjilR_27417 vs. DB:Swiss
Match: CSLE6_ORYSJ (Cellulose synthase-like protein E6 OS=Oryza sativa subsp. japonica OX=39947 GN=CSLE6 PE=2 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 6.387e-38 Identity = 90/297 (30.30%), Postives = 149/297 (50.17%), Query Frame = 3 Query: 2448 QVGFLYDSVVEDFLTGFFLHCKGWTSVFCEPSNPQFLGTATTNLNDVLIQGSRWYSGLFENGISRFSPLIYGPPRMPLLQSLCFAELTYFPLYCLPLWCFAIIPQICLLNGIPLYPKVTIMHIFSSYTITIFF*SLSLLQVSDRXXXXXXXXXXXXXXKHLQEVFLTGGTMHKWINEQRIWMMKSITCHLYGCLDAVLKKIGIREASFLPTNKVEDDEQSMLYQMDKYDFQASNTFIVPMLALLSINVSCFIGGVYRVSLVGDWDKMFIQLFLAAFIITVNYPIIEGLVVRKDKGCI 3338 ++G Y VED +TG +HC+GW SV+ EP F+G A L ++Q RW G F +S+ + ++G ++ L + + + LP + +IP + L+ G PL+P+ IM +++ I +F L L E L+G T+ W N QR+WM+K IT +LYG +D + K +G+ + SF T KV D +++ Y+ + +F +S+ V + + +N C + G+ ++ + G W+ Q+ L I+ N PI E + VRKDKG I Sbjct: 435 EIGVKYGCPVEDVITGLAIHCRGWESVYMEPQRAAFVGVAPATLAQTILQHKRWSEGNFTIFLSKHNTFLFGHGKISLQLQMGYCIYGLWAANSLPTIYYVMIPALGLVKGTPLFPE--IMSPWATPFIYVF---------------------CVKTLYSLYEALLSGDTLKGWWNGQRMWMVKRITSYLYGFIDTIRKLLGLSKMSFEITAKVSDGDEAKRYEQEILEFGSSSPEFVIIATVALLNFVCLVAGLSKI-MAGVWNVFLPQVILCGLIVITNIPIYEAMFVRKDKGRI 707 HSP 2 Score: 138.658 bits (348), Expect = 3.881e-32 Identity = 70/167 (41.92%), Postives = 99/167 (59.28%), Query Frame = 1 Query: 64 INRLHMFLHSTALFFMFYYRLSFLFQNQVSRTSYLLPWLLVFASEIILSFIWILGQAYRWRPVSRTVFPERLPE--DDKLPAIDVFICTADPIKEPTVVVMNTVLSAMSLDYPADNLHVYLSDDGGSPLTLLGMRVAWKFARWWLPFCRRYRIKSRCPKAYFSGLEN 558 + RL + + + YYR + + R + WL + A+E+ + W++ Q+ RW PV R F RL E + LP +DVF+CTADP EP +V++T+LS M+ +YP++ + VYLSDDGGS LT + A FA+ WLPFCRRY I+ R P AYFS E Sbjct: 22 VYRLQAATVAAGILLVLYYRATRVPAAGEGRAA----WLGMAAAELWFAVYWVITQSVRWCPVRRRTFKNRLAERYKENLPGVDVFVCTADPHAEPPSLVISTILSVMAYNYPSEKISVYLSDDGGSILTFYALWEASMFAKKWLPFCRRYNIEPRSPAAYFSESEG 184 HSP 3 Score: 77.7962 bits (190), Expect = 4.188e-13 Identity = 32/74 (43.24%), Postives = 55/74 (74.32%), Query Frame = 1 Query: 1489 LRVSSVMSNAPYILVLDCDMFCNDPSSARYAMCFHLDPKISSSLAFVQFPQKFHNISKNDIYDSQLRSLFTVKI 1710 +RVS+++S++P IL +DCDM+ N+ S R A+CF LD ++S + FVQ+PQ ++N++KN+IY + L + V++ Sbjct: 290 IRVSALISDSPVILNVDCDMYSNNSDSIRDALCFFLDEEMSHKIGFVQYPQNYNNMTKNNIYGNSLNVINHVEM 363
BLAST of rna-TanjilR_27417 vs. DB:Swiss
Match: CSLE1_ARATH (Cellulose synthase-like protein E1 OS=Arabidopsis thaliana OX=3702 GN=CSLE1 PE=2 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 7.521e-35 Identity = 96/332 (28.92%), Postives = 169/332 (50.90%), Query Frame = 3 Query: 2421 CIYIYNV-W-LQVGFLYDSVVEDFLTGFFLHCKGWTSVFCEPSNPQFLGTATTNLNDVLIQGSRWYSGLFENGISRFSPLIYGPPRMPLLQSLCFAELTYFPLYCLPLWCFAIIPQICLLNGIPLYPKVTIMHIFSSYTITIFF*SLSLLQVSDRXXXXXXXXXXXXXXKHLQEVFLTGGTMHKWINEQRIWMMKSITCHLYGCLDAVLKKIGIREASFLPTNKVEDDEQSMLYQMDKYDFQASNTFIVPMLALLSINVSCFIGGVYRV--SLVGDWDKMFIQLFLAAFIITVNYPIIEGLVVRKDKGCISKLVATHVILATMILLEICALL 3404 C Y N W ++G Y VED +TG + C+GW S + P FLG A TNL+ +L+Q RW G F+ +S++SP+ YG ++ L L + + LP+ ++++ +CL GIPL+PKV+ SS+ I + +++ S L E GGT W NEQR+W+ + + L+G +D + K +G+ E++F+ T KV ++E + Y+ + +F + + + L +N+ CF V R+ GD M +Q + ++ +N+P+ +G+++R+DKG K+ + + + ++ L C L Sbjct: 421 CTYEENTQWGKEMGVKYGCPVEDVITGLTIQCRGWKSAYLNPEKQAFLGVAPTNLHQMLVQQRRWSEGDFQIMLSKYSPVWYGKGKISLGLILGYCCYCLWAPSSLPVLIYSVLTSLCLFKGIPLFPKVS-----SSWFIPFGYVTVAATAYS------------------LAEFLWCGGTFRGWWNEQRMWLYRRTSSFLFGFMDTIKKLLGVSESAFVITAKVAEEEAAERYKEEVMEFGVESPMFLVLGTLGMLNLFCFAAAVARLVSGDGGDLKTMGMQFVITGVLVVINWPLYKGMLLRQDKG---KMPMSVTVKSVVLALSACTCL 726 HSP 2 Score: 127.102 bits (318), Expect = 1.678e-28 Identity = 64/153 (41.83%), Postives = 93/153 (60.78%), Query Frame = 1 Query: 106 FMFYYRLSFLFQNQVSRTSYLLPWLLVFASEIILSFIWILGQAYRWRPVSRTVFPERLPE--DDKLPAIDVFICTADPIKEPTVVVMNTVLSAMSLDYPADNLHVYLSDDGGSPLTLLGMRVAWKFARWWLPFCRRYRIKSRCPKAYFSGLEN 558 +++YR+ + N+ L W ++F EI W++ Q+ RW PV R F +RL LP +DVF+CTADP+ EP ++V+NTVLS +LDYP + L VYLSDDGGS LT + A +FA+ W+PFC+++ ++ P AY S N Sbjct: 45 LIWFYRIGEIGDNRTVLDR--LIWFVMFIVEIWFGLYWVVTQSSRWNPVWRFPFSDRLSRRYGSDLPRLDVFVCTADPVIEPPLLVVNTVLSVTALDYPPEKLAVYLSDDGGSELTFYALTEAAEFAKTWVPFCKKFNVEPTSPAAYLSSKAN 195 HSP 3 Score: 75.0998 bits (183), Expect = 2.730e-12 Identity = 34/67 (50.75%), Postives = 45/67 (67.16%), Query Frame = 1 Query: 1489 LRVSSVMSNAPYILVLDCDMFCNDPSSARYAMCFHLDPKISSSLAFVQFPQKFHNISKNDIYDSQLR 1689 LRVSS ++ IL LDCDM+ N+ S R A+C LD K +AFVQFPQ F N+++ND+Y S +R Sbjct: 293 LRVSSKITCGKIILNLDCDMYANNSKSTRDALCILLDEKEGKEIAFVQFPQCFDNVTRNDLYGSMMR 359
BLAST of rna-TanjilR_27417 vs. DB:Swiss
Match: CSLE1_ORYSJ (Cellulose synthase-like protein E1 OS=Oryza sativa subsp. japonica OX=39947 GN=CSLE1 PE=2 SV=2) HSP 1 Score: 144.821 bits (364), Expect = 3.707e-34 Identity = 91/313 (29.07%), Postives = 151/313 (48.24%), Query Frame = 3 Query: 2451 VGFLYDSVVEDFLTGFFLHCKGWTSVFCEPSNPQFLGTATTNLNDVLIQGSRWYSGLFENGISRFSPLIYGPPRMPLLQSLCFAELTYFPLYCLPLWCFAIIPQICLLNGIPLYPKVTIMHIFSSYTITIFF*SLSLLQVSDRXXXXXXXXXXXXXXKHLQEVFLTGGTMHKWINEQRIWMMKSITCHLYGCLDAVLKKIGIREASFLPTNKVEDDEQSMLYQMDKYDFQASNTFIVPMLALLSINVSCFIGGVYRVSLVG----DWDKMFIQLFLAAFIITVNYPIIEGLVVRKDKGCISKLVATHVILATM 3377 +G Y ED +TG +HC+GW S F P FLG A + L ++Q RW G +S++ ++G ++ L + + + LP + +IP + L+ G PL+P+ IM +++ I +F L L E L+G T+ W N QR+WM+KSIT +LYG +D + K +G+ + SF T KV +++ Y+ + +F +S+ V + + +N C +GG+ ++ + G W+ Q L I+ +N PI E + +RKD G I T V LA++ Sbjct: 441 IGVKYGFPAEDIITGLAIHCRGWESAFINPKRAAFLGLAPSTLAQNILQHKRWSEGNLTIFLSKYCSFLFGHGKIKLQLQMGYCICGLWAANSLPTLYYVVIPSLGLVKGTPLFPQ--IMSPWATPFIYVF---------------------CVKTLYGLYEALLSGDTLKGWWNGQRMWMVKSITSYLYGFIDTIRKCVGMSKMSFEVTAKVSGHDEAKRYEQEILEFGSSSPEYVIIATVALLNFVCLVGGLSQI-MAGVWNMPWNVFLPQAILCGMIVIINMPIYEAMFLRKDNGRI----PTAVTLASI 725 HSP 2 Score: 136.732 bits (343), Expect = 1.492e-31 Identity = 66/163 (40.49%), Postives = 99/163 (60.74%), Query Frame = 1 Query: 64 INRLHMFLHSTALFFMFYYRLSFLFQNQVSRTSYLLPWLLVFASEIILSFIWILGQAYRWRPVSRTVFPERLPE--DDKLPAIDVFICTADPIKEPTVVVMNTVLSAMSLDYPADNLHVYLSDDGGSPLTLLGMRVAWKFARWWLPFCRRYRIKSRCPKAYFS 546 + R+ + + + YYR + + R + WL + A+E+ + W++ Q+ RWRP R F +RL E + LP +D+F+CTADP EP +V++T+LS M+ +YP++ + VYLSDDGGS LT + A FA+ WLPFC+RY I+ R P AYFS Sbjct: 27 VYRVQAATVAAGILLVLYYRATRVPAAGEGRAA----WLGMAAAELWFAVYWVIAQSVRWRPFRRRTFRDRLAERYEQNLPGVDIFVCTADPQSEPPSLVISTILSVMAYNYPSEKISVYLSDDGGSILTFYALWEASIFAKKWLPFCKRYNIEPRSPAAYFS 185 HSP 3 Score: 78.1814 bits (191), Expect = 2.902e-13 Identity = 33/74 (44.59%), Postives = 53/74 (71.62%), Query Frame = 1 Query: 1489 LRVSSVMSNAPYILVLDCDMFCNDPSSARYAMCFHLDPKISSSLAFVQFPQKFHNISKNDIYDSQLRSLFTVKI 1710 +RVSSV+S++P IL +DCDM+ N+ S R A+CF LD ++ + FVQ+PQ F+N+++NDIY + + V++ Sbjct: 295 IRVSSVISDSPVILNVDCDMYSNNSDSIRDALCFFLDEEMGQKIGFVQYPQIFNNMTQNDIYGNSFNVSYHVEM 368
BLAST of rna-TanjilR_27417 vs. DB:Swiss
Match: CSLE2_ORYSJ (Cellulose synthase-like protein E2 OS=Oryza sativa subsp. japonica OX=39947 GN=CSLE2 PE=2 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 3.157e-33 Identity = 93/332 (28.01%), Postives = 159/332 (47.89%), Query Frame = 3 Query: 2421 CIYIYN-VW-LQVGFLYDSVVEDFLTGFFLHCKGWTSVFCEPSNPQFLGTATTNLNDVLIQGSRWYSGLFENGISRFSPLIYGPPRMPLLQSLCFAELTYFPLYCLPLWCFAIIPQICLLNGIPLYPKVTIMHIFSSYTITIFF*SLSLLQVSDRXXXXXXXXXXXXXXKHLQEVFLTGGTMHKWINEQRIWMMKSITCHLYGCLDAVLKKIGIREASFLPTNKVEDDEQSMLYQMDKYDFQASNTFIVPMLALLSINVSCFIGGVYRVSLV---GDWDKMFIQLFLAAFIITVNYPIIEGLVVRKDKGCISKLVATHVI--LATMILLEIC 3395 C Y +N +W ++ G Y +ED TG + C+GW SV+ P FLG T+L +L+ RW G + +SR+SP + G ++ L + ++ ++ + P + IP +C LNGI L+P+ T S + I + ++ S L E G + +W N QR+W+++ IT +L +D + +GI E+ F T KV D + Y+ +F + + V + + +N++C + G+ RV L G + +F+Q L I+ +N P+ E L +R+DKG + VA I + + +L IC Sbjct: 436 CTYEHNTIWGIEKGVRYGCPLEDVTTGLQIQCRGWRSVYYNPKRKGFLGMTPTSLGQILVLYKRWTEGFLQISLSRYSPFLLGHGKIKLGLQMGYSVCGFWAVNSFPTLYYVTIPSLCFLNGISLFPEKT-----SPWFIPFAYVMVAAYSCS------------------LAESLQCGDSAVEWWNAQRMWLIRRITSYLLATIDTFRRILGISESGFNLTVKVTDLQALERYKKGMMEFGSFSAMFVILTTVALLNLACMVLGISRVLLQEGPGGLETLFLQAVLCVLIVAINSPVYEALFLRRDKGSLPASVARVSICFVLPLCILSIC 744 HSP 2 Score: 127.872 bits (320), Expect = 1.075e-28 Identity = 58/127 (45.67%), Postives = 89/127 (70.08%), Query Frame = 1 Query: 175 WLLVFASEIILSFIWILGQAYRWRPVSRTVFPERLPE---DDKLPAIDVFICTADPIKEPTVVVMNTVLSAMSLDYPADNLHVYLSDDGGSPLTLLGMRVAWKFARWWLPFCRRYRIKSRCPKAYFS 546 WL + A+E+ F W+L + RW PV R F +RL + +D+LP++D+F+CTADP EP ++V++TVLS M+ DY + L++YLSDD GS LT + A +FA+ W+PFC++Y+++ R P AYF+ Sbjct: 68 WLGMLAAELWFGFYWVLTLSVRWCPVYRRTFKDRLAQSYSEDELPSVDIFVCTADPTAEPPMLVISTVLSVMAYDYLPEKLNIYLSDDAGSVLTFYVLCEASEFAKHWIPFCKKYKVEPRSPAAYFA 194 HSP 3 Score: 75.0998 bits (183), Expect = 2.399e-12 Identity = 32/63 (50.79%), Postives = 44/63 (69.84%), Query Frame = 1 Query: 1489 LRVSSVMSNAPYILVLDCDMFCNDPSSARYAMCFHLDPKISSSLAFVQFPQKFHNISKNDIYD 1677 +RVSSV+SN+P I+ +DCDM+ N+ S R A+CF LD + + FVQ+PQ F N+ NDIY Sbjct: 304 IRVSSVISNSPIIMNVDCDMYSNNSESIRDALCFFLDEEQGQDIGFVQYPQNFENVVHNDIYG 366
BLAST of rna-TanjilR_27417 vs. DB:Swiss
Match: CESA7_ORYSJ (Cellulose synthase A catalytic subunit 7 [UDP-forming] OS=Oryza sativa subsp. japonica OX=39947 GN=CESA7 PE=2 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 1.199e-32 Identity = 99/350 (28.29%), Postives = 174/350 (49.71%), Query Frame = 3 Query: 2364 ADFSVTLIQLVHQFSCSKKCIYIYNVWLQVGFLYDSVVEDFLTGFFLHCKGWTSVFCEPSNPQFLGTATTNLNDVLIQGSRWYSGLFENGISRFSPLIYG-PPRMPLLQSLCFAELTYFPLYCLPLWCFAIIPQICLLNGIPLYPKVTIMHIFSSYTITIFF*SLSLLQVSDRXXXXXXXXXXXXXXKHLQEVFLTGGTMHKWINEQRIWMMKSITCHLYGCLDAVLKKIGIREASFLPTNKVEDDEQSMLYQMDKYDFQASNTFIVPMLALLSINVSCFIGGVYRV--SLVGDWDKMFIQLFLAAFIITVNYPIIEGLVVRKDKGCISKLVATHVILATMILLEICALL 3404 AD + + + +H SC + + ++G++Y SV ED LTGF +HC+GW SV+C P+ F G+A NL+D L Q RW G E +SR PL Y R+ L+ + +P +PL + IP +CLL G + P T+ ++ S + I +F LS++ + E+ +G ++ W ++ W++ ++ HL+ +LK +G + +F T+K DE ++ Y F+ + T +VP L+ IN+ + GV + G W +F +LF + ++I YP ++GL+ R+++ T V+L +++L I +L+ Sbjct: 725 ADPAALIKEAIHVISCGYEEKTEWGK--EIGWIYGSVTEDILTGFKMHCRGWKSVYCTPARAAFKGSAPINLSDRLHQVLRWALGSVEIFMSRHCPLWYAYGGRLKWLERFAYTNTIVYPFTSIPLLAYCTIPAVCLLTGKFIIP--TLNNLASIWFIALF---LSIIATG------------------VLELRWSGVSIEDWWRNEQFWVIGGVSAHLFAVFQGLLKVLGGVDTNFTVTSKAAADETDAFGEL--YLFKWT-TLLVPPTTLIIINMVGIVAGVSDAVNNGYGSWGPLFGKLFFSFWVILHLYPFLKGLMGRQNR------TPTIVVLWSILLASIFSLV 1040 HSP 2 Score: 106.301 bits (264), Expect = 8.773e-22 Identity = 59/166 (35.54%), Postives = 89/166 (53.61%), Query Frame = 1 Query: 70 RLHMFLHSTALFFMFYYRLSFLFQNQVSRTSYLLPWLLVFASEIILSFIWILGQAYRWRPVSRTVFPERLP-------EDDKLPAIDVFICTADPIKEPTVVVMNTVLSAMSLDYPADNLHVYLSDDGGSPLTLLGMRVAWKFARWWLPFCRRYRIKSRCPKAYFS 546 R+ + L L F +R++ + V WL E+ + WIL Q +W PV+R + +RL E +L ID F+ T DP+KEP ++ NTVLS +++DYP D + Y+SDDG S L + +FAR W+PFC+++ I+ R P+ YFS Sbjct: 213 RIVIVLRLVVLCFFLKFRITTPAMDAVPL------WLASVICELWFALSWILDQLPKWSPVTRETYLDRLALRYERDGEPCRLAPIDFFVSTVDPLKEPPIITANTVLSILAVDYPVDRVSCYVSDDGASMLLFDTLSETAEFARRWVPFCKKFTIEPRAPEFYFS 372 HSP 3 Score: 74.7146 bits (182), Expect = 4.388e-12 Identity = 31/75 (41.33%), Postives = 50/75 (66.67%), Query Frame = 1 Query: 1489 LRVSSVMSNAPYILVLDCDMFCNDPSSARYAMCFHLDPKISSSLAFVQFPQKFHNISKNDIYDSQLRSLFTVKIS 1713 +RVS+V++NAP+IL LDCD + N+ + R AMCF +D ++ L +VQFPQ+F I ++D Y ++ F + + Sbjct: 483 VRVSAVLTNAPFILNLDCDHYVNNSKAVREAMCFLMDKQLGKKLCYVQFPQRFDGIDRHDRYANRNTVFFDINMK 557
BLAST of rna-TanjilR_27417 vs. DB:Swiss
Match: CESA7_ARATH (Cellulose synthase A catalytic subunit 7 [UDP-forming] OS=Arabidopsis thaliana OX=3702 GN=CESA7 PE=1 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 2.042e-32 Identity = 97/348 (27.87%), Postives = 174/348 (50.00%), Query Frame = 3 Query: 2373 SVTLIQLVHQFSCSKKCIYIYNVWLQVGFLYDSVVEDFLTGFFLHCKGWTSVFCEPSNPQFLGTATTNLNDVLIQGSRWYSGLFENGISRFSPLIYG--PPRMPLLQSLCFAELTYFPLYCLPLWCFAIIPQICLLNGIPLYPKVTIMHIFSSYTITIFF*SLSLLQVSDRXXXXXXXXXXXXXXKHLQEVFLTGGTMHKWINEQRIWMMKSITCHLYGCLDAVLKKIGIREASFLPTNKVEDDEQSMLYQMDKYDFQASNTFIVPMLALLSINVSCFIGGVYRVSLVG--DWDKMFIQLFLAAFIITVNYPIIEGLVVRKDKGCISKLVATHVILATMILLEICALL 3404 +V L + +H SC + + ++G++Y S+ ED LTGF +HC+GW S++C P P F G+A NL+D L Q RW G E SR SPL YG ++ L+ +A T +P +PL + I+P ICLL + P ++ ++FF SL + + + + E+ +G ++ +W ++ W++ I+ HL+ + +LK + + +F T+K DD+ + Y F+ + T ++P +L IN+ + G+ G W +F +LF + ++I YP ++GL+ R+++ T V++ +++L I +LL Sbjct: 692 AVLLKEAIHVISCGYEDKTEWGT--ELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEIFFSRHSPLWYGYKGGKLKWLERFAYANTTIYPFTSIPLLAYCILPAICLLTDKFIMPPISTF-------ASLFFISLFMSII----------------VTGILELRWSGVSIEEWWRNEQFWVIGGISAHLFAVVQGLLKILAGIDTNFTVTSKATDDDDF----GELYAFKWT-TLLIPPTTVLIINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNR------TPTIVVIWSVLLASIFSLL 1003 HSP 2 Score: 108.997 bits (271), Expect = 1.305e-22 Identity = 53/131 (40.46%), Postives = 78/131 (59.54%), Query Frame = 1 Query: 175 WLLVFASEIILSFIWILGQAYRWRPVSRTVFPERLP-------EDDKLPAIDVFICTADPIKEPTVVVMNTVLSAMSLDYPADNLHVYLSDDGGSPLTLLGMRVAWKFARWWLPFCRRYRIKSRCPKAYFS 546 WL EI + WIL Q +W P+ R + +RL E + L +DVF+ T DP+KEP +V NTVLS +++DYP + + Y+SDDG S LT + +FAR W+PFC+++ I+ R P+ YF+ Sbjct: 267 WLTSVICEIWFAVSWILDQFPKWFPIERETYLDRLSLRYEREGEPNMLAPVDVFVSTVDPLKEPPLVTSNTVLSILAMDYPVEKISCYVSDDGASMLTFESLSETAEFARKWVPFCKKFSIEPRAPEMYFT 397 HSP 3 Score: 75.8702 bits (185), Expect = 1.683e-12 Identity = 31/75 (41.33%), Postives = 49/75 (65.33%), Query Frame = 1 Query: 1489 LRVSSVMSNAPYILVLDCDMFCNDPSSARYAMCFHLDPKISSSLAFVQFPQKFHNISKNDIYDSQLRSLFTVKIS 1713 +RV+ V++NAP++L LDCD + N+ + R AMCF +DP+I + +VQFPQ+F I ND Y ++ F + + Sbjct: 508 VRVAGVLTNAPFMLNLDCDHYVNNSKAVREAMCFLMDPQIGKKVCYVQFPQRFDGIDTNDRYANRNTVFFDINMK 582
BLAST of rna-TanjilR_27417 vs. DB:Swiss
Match: CESA9_ORYSJ (Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza sativa subsp. japonica OX=39947 GN=CESA9 PE=2 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 2.947e-32 Identity = 97/345 (28.12%), Postives = 168/345 (48.70%), Query Frame = 3 Query: 2382 LIQLVHQFSCSKKCIYIYNVWLQVGFLYDSVVEDFLTGFFLHCKGWTSVFCEPSNPQFLGTATTNLNDVLIQGSRWYSGLFENGISRFSPLIYG--PPRMPLLQSLCFAELTYFPLYCLPLWCFAIIPQICLLNGIPLYPKVTIMHIFSSYTITIFF*SLSLLQVSDRXXXXXXXXXXXXXXKHLQEVFLTGGTMHKWINEQRIWMMKSITCHLYGCLDAVLKKIGIREASFLPTNKVEDDEQSMLYQMDKYDFQASNTFIVPMLALLSINVSCFIGGVYRVSLVGD--WDKMFIQLFLAAFIITVNYPIIEGLVVRKDKGCISKLVATHVILATMILLEICALL 3404 L + +H SC + + L++G++Y S+ ED LTGF +HC+GW SV+C P F G+A NL+D L Q RW G E SR SPL+YG + L+ + T +P LPL + +P +CLL G + P ++ F+S F S+ + E+ +G ++ +W ++ W++ ++ HL+ + +LK + + +F T+K DE ++ Y F+ + T ++P LL +N+ + GV G W +F +LF A ++I YP ++GL+ R+++ T V++ +++L I +LL Sbjct: 722 LKEAIHVISCGYEDKTDWG--LELGWIYGSITEDILTGFKMHCRGWRSVYCMPKRAAFKGSAPINLSDRLNQVLRWALGSVEIFFSRHSPLLYGYKNGNLKWLERFSYINTTIYPFTSLPLLAYCTLPAVCLLTGKFIMPPIS---TFASLFFIALFISI--------------------FATGILEMRWSGVSIEEWWRNEQFWVIGGVSAHLFAVVQGLLKVLAGIDTNFTVTSKATGDEDDEFAEL--YAFKWT-TLLIPPTTLLILNIIGVVAGVSDAINNGSEAWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNR------TPTIVVIWSVLLASIFSLL 1032 HSP 2 Score: 110.538 bits (275), Expect = 3.747e-23 Identity = 80/256 (31.25%), Postives = 115/256 (44.92%), Query Frame = 1 Query: 175 WLLVFASEIILSFIWILGQAYRWRPVSRTVFPERLP-------EDDKLPAIDVFICTADPIKEPTVVVMNTVLSAMSLDYPADNLHVYLSDDGGSPLTLLGMRVAWKFARWWLPFCRRYRIKSRCPKAYFSGLENDDGDFARSSVYMADKQKIKVSLILQ*N*IVSLNYRL*NRI*S*TA***LMKLNNWQEKYEAFKEEIKTLREDSA-------FSRDS---PGINNVQDHPSVIEV*YYNSIYIFIHGCGTDT 891 WL EI + WIL Q +W P+ R + +RL E L A+D+F+ T DP+KEP +V NTVLS +++DYP D + Y+SDDG S LT + +FAR W+PFC+++ I+ R P+ YFS + Y+ DK V N+ + + + +YE FK I L + +D PG NN +DHP +I+V H G DT Sbjct: 296 WLTSIICEIWFAVSWILDQFPKWYPIDRETYLDRLSLRYEREGEPSLLSAVDLFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGASMLTFESLSETAEFARKWVPFCKKFSIEPRAPEFYFS----------QKVDYLKDK--------------VHPNF--------------VQERRAMKREYEEFKVRINALVAKAQKVPAEGWIMKDGTPWPG-NNTRDHPGMIQV-------FLGHSGGHDT 505 HSP 3 Score: 72.7886 bits (177), Expect = 1.511e-11 Identity = 30/75 (40.00%), Postives = 50/75 (66.67%), Query Frame = 1 Query: 1489 LRVSSVMSNAPYILVLDCDMFCNDPSSARYAMCFHLDPKISSSLAFVQFPQKFHNISKNDIYDSQLRSLFTVKIS 1713 +RVS+V++NAP++L LDCD + N+ + R AMCF +DP++ + +VQFPQ+F I +D Y ++ F + + Sbjct: 537 IRVSAVLTNAPFMLNLDCDHYINNSKAIREAMCFLMDPQVGRKVCYVQFPQRFDGIDVHDRYANRNTVFFDINMK 611 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_27417 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_27417_La_Tanjil_v1.0 ID=rna-TanjilR_27417_La_Tanjil_v1.0; Name=rna-TanjilR_27417; organism=Lupinus angustifolius; type=mRNA; length=3416bpback to top protein sequence of rna-TanjilR_27417_La_Tanjil_v1.0 >rna-TanjilR_27417_La_Tanjil_v1.0 ID=rna-TanjilR_27417_La_Tanjil_v1.0; Name=rna-TanjilR_27417_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=742bpback to top mRNA from alignment at Chr_LG18-CM007378.1:10298244..10301659- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_27417_La_Tanjil_v1.0 ID=rna-TanjilR_27417_La_Tanjil_v1.0; Name=rna-TanjilR_27417; organism=Lupinus angustifolius; type=mRNA; length=3416bp; location=Sequence derived from: Chr_LG18-CM007378.1:10298244..10301659- (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG18-CM007378.1:10298244..10301659- >rna-TanjilR_27417_La_Tanjil_v1.0 ID=rna-TanjilR_27417_La_Tanjil_v1.0; Name=rna-TanjilR_27417; organism=Lupinus angustifolius; type=CDS; length=2229bp; location=Sequence derived from: Chr_LG18-CM007378.1:10298244..10301659- (Lupinus angustifoliusback to top Annotated Terms
The
following terms have been associated with
this mRNA:
|