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Transcript Overview
Name | rna-TanjilR_26585 |
Unique Name | rna-TanjilR_26585_La_Tanjil_v1.0 |
Type | mRNA |
Organism | Lupinus angustifolius (blue lupin) |
Sequence length | 2253 |
Product | hypothetical protein |
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
rna-TanjilR_26585 | rna-TanjilR_26585_La_Tanjil_v1.0-protein | Lupinus angustifolius | polypeptide |
rna-TanjilR_26585_La_Tanjil_v1.0 | rna-TanjilR_26585_La_Tanjil_v1.0 | Lupinus angustifolius | polypeptide |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
rna-TanjilR_26585_La_Tanjil_v1.0-CDS-Chr_LG19-CM007379.1_La_Tanjil_v1.0-1579734366:16629066..16629206 | rna-TanjilR_26585_La_Tanjil_v1.0-CDS-Chr_LG19-CM007379.1_La_Tanjil_v1.0-1579734366:16629066..16629206 | Lupinus angustifolius | CDS |
rna-TanjilR_26585_La_Tanjil_v1.0-CDS-Chr_LG19-CM007379.1_La_Tanjil_v1.0-1579734366:16628275..16628485 | rna-TanjilR_26585_La_Tanjil_v1.0-CDS-Chr_LG19-CM007379.1_La_Tanjil_v1.0-1579734366:16628275..16628485 | Lupinus angustifolius | CDS |
rna-TanjilR_26585_La_Tanjil_v1.0-CDS-Chr_LG19-CM007379.1_La_Tanjil_v1.0-1579734366:16626954..16627492 | rna-TanjilR_26585_La_Tanjil_v1.0-CDS-Chr_LG19-CM007379.1_La_Tanjil_v1.0-1579734366:16626954..16627492 | Lupinus angustifolius | CDS |
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
rna-TanjilR_26585_La_Tanjil_v1.0-exon-Chr_LG19-CM007379.1_La_Tanjil_v1.0-1579734366:16629066..16629206 | rna-TanjilR_26585_La_Tanjil_v1.0-exon-Chr_LG19-CM007379.1_La_Tanjil_v1.0-1579734366:16629066..16629206 | Lupinus angustifolius | exon |
rna-TanjilR_26585_La_Tanjil_v1.0-exon-Chr_LG19-CM007379.1_La_Tanjil_v1.0-1579734366:16628275..16628485 | rna-TanjilR_26585_La_Tanjil_v1.0-exon-Chr_LG19-CM007379.1_La_Tanjil_v1.0-1579734366:16628275..16628485 | Lupinus angustifolius | exon |
rna-TanjilR_26585_La_Tanjil_v1.0-exon-Chr_LG19-CM007379.1_La_Tanjil_v1.0-1579734366:16626954..16627492 | rna-TanjilR_26585_La_Tanjil_v1.0-exon-Chr_LG19-CM007379.1_La_Tanjil_v1.0-1579734366:16626954..16627492 | Lupinus angustifolius | exon |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | GENE3D | 1.10.287.700 | | coord: 162..223 e-value: 1.3E-8 score: 37.1 coord: 77..161 e-value: 8.8E-10 score: 40.8 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 119..193 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 48..81 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 119..196 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 209..229 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 66..81 |
None | No IPR available | SUPERFAMILY | 58113 | Apolipoprotein A-I | coord: 91..256 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_26585_La_Tanjil_v1.0 ID=rna-TanjilR_26585_La_Tanjil_v1.0; Name=rna-TanjilR_26585; organism=Lupinus angustifolius; type=mRNA; length=2253bp ATGGCAACCATGTTCATAACAAGAAACGCTATCTTCCGTTTCTCAAAGTC ATTTTCATTTGCTTACACACCTTCACTTTCCCTCAGGTTTTCCCAAAAAC CCTTCAGGGTTGTCTTCTCTTCTGTTTCCAACCACTCAAACGTAAGTTCA TCATGTTAATTACTTTTTTCTTTAATATTTTTGATGAGTGTAATATTTAT GCACTTTCGGTGTAAAGATTTATACACAGTTGCTATATCATCTATCATTT GGTTCACTTTTTAAATTTGTCAAATGATCATTAAAAATGAATCATGGATG ATACATGACAATATGTAAAAGTCAGTGCATTATTCTTTTTCTCATTTTTC ATACTTATTTGTAGATAATATTTTGTAGAACATTGGAGGATTTATATAAT TATGGGAGGATATCAATGTATTATGTGCTGTTTCAAAGTAGAGTCAAGGA ATGCGTGTATAAGAGAATTGTAGGCCCAAATGTCAAAATTTGTCACGCAA ATATTTCCTTAGTGATAATGAATAATATTTATTGAGTAATTAATAATCAT CATAATACAAAACATTTTTTAATATATTTCCGTTTGCCCTTTATTTCAAG GTTTTACATTTTTATGGGACGGGCTTAGAAGTATTAGTAATATAGTTCTT GTGGTAACATTTCATCACGTATTTAATTTTTCTTTATTATGATTTGTGCT TATATTTTCATCTTTGGGTAGTGGGGAAATGCAGCAGAAGGATCAAGAGA TTCAAGAGGTGATAGTTGGGTATACGATTCTACAAGTACAAGACGTGAGG CAGAAGCAAGAGAGAATGATAGAGTGAAAGAGGGAGCATATGAAATGAAA GAAAGAACCAAAGACTATGCAAATGATGCAAAAGAGAAGACAAAGGATGT GGCTGGTTCCATGGTTGATAAAGCCAAACAAGGTACTAAAATAATAACTG ATTAGAAACTATATTTTCAACATTAAAGATTTATGCTACTACAATGGATT ACATTATATATATAAGATTTTTAAAATTCAAATTCAAGTAACAATAGCTT TCCAATAGTACAAGAATCTTGTGAAGTGAACGAATACGAAAATGAGTAAG AATATATGTCTACCTTACATATGATTTAAATGCGTTTGAGATTAATTAAA GTAAGGGTTTACTCTTACCTACTAACTTTACATGAAAAATATGAATGAGA GTTTCTTTCTTTTCTTTTCTTTCTTGTGTTTTAAGGCTAAAACTATAAAA TGAATATAATTAATAAGGATATAATTGTCATTTTATTTTGTGTTTTCTTT GTTTGTCACACAACCCCTTTTATTACTAGAGAGTCGGCCTTACCCCTCAC CCAGTATGCCCAATCATGGCCAGGTTTGAATAGAGTTGGGTTTCATCGAG TCTGAAATCGGGTTTGGGTTCAAATATTAGACCCGATCAATATTTAGGGT TAGGTAAAAATAGAGCATGATCCATCTCATGGTCTTAATCCATCCCAACC TGACTCATGATTTTATGGAAAATGTCATATACCCTTCTAACAAATTAGTC TAAAAATCATCATAACCTCTTATGAAGTTAAGTTGACATGTGTTTCAACT AAAGTATGTCATTTTTTTATAATCAGAAGATTTTTAGGTCAATTTATTCG GGGTGGTATGTCCCTCCTATACCAAAAAAAATGCTAAGTAATTGACTAAT CAACACTCTTCCAGGCACAAATAGAGCCAAAGAGTATGCACACGAGACAA AGGAGGAGGCTAAGGATGCTGCAGGAACAATGGCTGACAAAACCAAAGAG TATGCAGAAGAGACAAAGGAAGAGGCCAAGGATGCTGCAGGAACATTTGC TGAAAAGACCAAAGAAGGTGCAAACAATGCAACAGAGAAAGCAAAAGAGT ATGGCCATGAGGCAAAGGAAAGAACCAAGGAAGGGGCTAATAAGGTGGCG GATACAGCCGGATATATGAAGGATAAGGCTAAGGATGGTGCATATGGTGC AAAGGAGAAGACTAAGGAGGCGGCGGGTTCGGCCACCGAGACGGTGAAGA ATGTAGGGGAGAAGGCAAAGGAAACGGTGAAAGGAGCATGGGAGGCAACA AAAGATACCACAAACAAGATTAAGGAGAAAGTGGTTGGGAAAGATGATGA TGATGATGATGAAGAAAAAGATGGAGTAGTGGTAGGGTTGGATGAGGATG TTGTGGAATTGAAAAGAGGTGGGAAGGGTTATGGTGAGAGCAAGGATTAT TAG back to topprotein sequence of rna-TanjilR_26585_La_Tanjil_v1.0 >rna-TanjilR_26585_La_Tanjil_v1.0 ID=rna-TanjilR_26585_La_Tanjil_v1.0; Name=rna-TanjilR_26585_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=296bp MATMFITRNAIFRFSKSFSFAYTPSLSLRFSQKPFRVVFSSVSNHSNWGN AAEGSRDSRGDSWVYDSTSTRREAEARENDRVKEGAYEMKERTKDYANDA KEKTKDVAGSMVDKAKQGTNRAKEYAHETKEEAKDAAGTMADKTKEYAEE TKEEAKDAAGTFAEKTKEGANNATEKAKEYGHEAKERTKEGANKVADTAG YMKDKAKDGAYGAKEKTKEAAGSATETVKNVGEKAKETVKGAWEATKDTT NKIKEKVVGKDDDDDDEEKDGVVVGLDEDVVELKRGGKGYGESKDY back to topmRNA from alignment at Chr_LG19-CM007379.1:16626954..16629206- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >rna-TanjilR_26585_La_Tanjil_v1.0 ID=rna-TanjilR_26585_La_Tanjil_v1.0; Name=rna-TanjilR_26585; organism=Lupinus angustifolius; type=mRNA; length=2253bp; location=Sequence derived from: Chr_LG19-CM007379.1:16626954..16629206- (Lupinus angustifolius ATGGCAACCATGTTCATAACAAGAAACGCTATCTTCCGTTTCTCAAAGTC
ATTTTCATTTGCTTACACACCTTCACTTTCCCTCAGGTTTTCCCAAAAAC
CCTTCAGGGTTGTCTTCTCTTCTGTTTCCAACCACTCAAACGTAAGTTCA
TCATGTTAATTACTTTTTTCTTTAATATTTTTGATGAGTGTAATATTTAT
GCACTTTCGGTGTAAAGATTTATACACAGTTGCTATATCATCTATCATTT
GGTTCACTTTTTAAATTTGTCAAATGATCATTAAAAATGAATCATGGATG
ATACATGACAATATGTAAAAGTCAGTGCATTATTCTTTTTCTCATTTTTC
ATACTTATTTGTAGATAATATTTTGTAGAACATTGGAGGATTTATATAAT
TATGGGAGGATATCAATGTATTATGTGCTGTTTCAAAGTAGAGTCAAGGA
ATGCGTGTATAAGAGAATTGTAGGCCCAAATGTCAAAATTTGTCACGCAA
ATATTTCCTTAGTGATAATGAATAATATTTATTGAGTAATTAATAATCAT
CATAATACAAAACATTTTTTAATATATTTCCGTTTGCCCTTTATTTCAAG
GTTTTACATTTTTATGGGACGGGCTTAGAAGTATTAGTAATATAGTTCTT
GTGGTAACATTTCATCACGTATTTAATTTTTCTTTATTATGATTTGTGCT
TATATTTTCATCTTTGGGTAGTGGGGAAATGCAGCAGAAGGATCAAGAGA
TTCAAGAGGTGATAGTTGGGTATACGATTCTACAAGTACAAGACGTGAGG
CAGAAGCAAGAGAGAATGATAGAGTGAAAGAGGGAGCATATGAAATGAAA
GAAAGAACCAAAGACTATGCAAATGATGCAAAAGAGAAGACAAAGGATGT
GGCTGGTTCCATGGTTGATAAAGCCAAACAAGGTACTAAAATAATAACTG
ATTAGAAACTATATTTTCAACATTAAAGATTTATGCTACTACAATGGATT
ACATTATATATATAAGATTTTTAAAATTCAAATTCAAGTAACAATAGCTT
TCCAATAGTACAAGAATCTTGTGAAGTGAACGAATACGAAAATGAGTAAG
AATATATGTCTACCTTACATATGATTTAAATGCGTTTGAGATTAATTAAA
GTAAGGGTTTACTCTTACCTACTAACTTTACATGAAAAATATGAATGAGA
GTTTCTTTCTTTTCTTTTCTTTCTTGTGTTTTAAGGCTAAAACTATAAAA
TGAATATAATTAATAAGGATATAATTGTCATTTTATTTTGTGTTTTCTTT
GTTTGTCACACAACCCCTTTTATTACTAGAGAGTCGGCCTTACCCCTCAC
CCAGTATGCCCAATCATGGCCAGGTTTGAATAGAGTTGGGTTTCATCGAG
TCTGAAATCGGGTTTGGGTTCAAATATTAGACCCGATCAATATTTAGGGT
TAGGTAAAAATAGAGCATGATCCATCTCATGGTCTTAATCCATCCCAACC
TGACTCATGATTTTATGGAAAATGTCATATACCCTTCTAACAAATTAGTC
TAAAAATCATCATAACCTCTTATGAAGTTAAGTTGACATGTGTTTCAACT
AAAGTATGTCATTTTTTTATAATCAGAAGATTTTTAGGTCAATTTATTCG
GGGTGGTATGTCCCTCCTATACCAAAAAAAATGCTAAGTAATTGACTAAT
CAACACTCTTCCAGGCACAAATAGAGCCAAAGAGTATGCACACGAGACAA
AGGAGGAGGCTAAGGATGCTGCAGGAACAATGGCTGACAAAACCAAAGAG
TATGCAGAAGAGACAAAGGAAGAGGCCAAGGATGCTGCAGGAACATTTGC
TGAAAAGACCAAAGAAGGTGCAAACAATGCAACAGAGAAAGCAAAAGAGT
ATGGCCATGAGGCAAAGGAAAGAACCAAGGAAGGGGCTAATAAGGTGGCG
GATACAGCCGGATATATGAAGGATAAGGCTAAGGATGGTGCATATGGTGC
AAAGGAGAAGACTAAGGAGGCGGCGGGTTCGGCCACCGAGACGGTGAAGA
ATGTAGGGGAGAAGGCAAAGGAAACGGTGAAAGGAGCATGGGAGGCAACA
AAAGATACCACAAACAAGATTAAGGAGAAAGTGGTTGGGAAAGATGATGA
TGATGATGATGAAGAAAAAGATGGAGTAGTGGTAGGGTTGGATGAGGATG
TTGTGGAATTGAAAAGAGGTGGGAAGGGTTATGGTGAGAGCAAGGATTAT
TAG back to topCoding sequence (CDS) from alignment at Chr_LG19-CM007379.1:16626954..16629206- >rna-TanjilR_26585_La_Tanjil_v1.0 ID=rna-TanjilR_26585_La_Tanjil_v1.0; Name=rna-TanjilR_26585; organism=Lupinus angustifolius; type=CDS; length=891bp; location=Sequence derived from: Chr_LG19-CM007379.1:16626954..16629206- (Lupinus angustifolius ATGGCAACCATGTTCATAACAAGAAACGCTATCTTCCGTTTCTCAAAGTC ATTTTCATTTGCTTACACACCTTCACTTTCCCTCAGGTTTTCCCAAAAAC CCTTCAGGGTTGTCTTCTCTTCTGTTTCCAACCACTCAAACTGGGGAAAT GCAGCAGAAGGATCAAGAGATTCAAGAGGTGATAGTTGGGTATACGATTC TACAAGTACAAGACGTGAGGCAGAAGCAAGAGAGAATGATAGAGTGAAAG AGGGAGCATATGAAATGAAAGAAAGAACCAAAGACTATGCAAATGATGCA AAAGAGAAGACAAAGGATGTGGCTGGTTCCATGGTTGATAAAGCCAAACA AGGCACAAATAGAGCCAAAGAGTATGCACACGAGACAAAGGAGGAGGCTA AGGATGCTGCAGGAACAATGGCTGACAAAACCAAAGAGTATGCAGAAGAG ACAAAGGAAGAGGCCAAGGATGCTGCAGGAACATTTGCTGAAAAGACCAA AGAAGGTGCAAACAATGCAACAGAGAAAGCAAAAGAGTATGGCCATGAGG CAAAGGAAAGAACCAAGGAAGGGGCTAATAAGGTGGCGGATACAGCCGGA TATATGAAGGATAAGGCTAAGGATGGTGCATATGGTGCAAAGGAGAAGAC TAAGGAGGCGGCGGGTTCGGCCACCGAGACGGTGAAGAATGTAGGGGAGA AGGCAAAGGAAACGGTGAAAGGAGCATGGGAGGCAACAAAAGATACCACA AACAAGATTAAGGAGAAAGTGGTTGGGAAAGATGATGATGATGATGATGA AGAAAAAGATGGAGTAGTGGTAGGGTTGGATGAGGATGTTGTGGAATTGA AAAGAGGTGGGAAGGGTTATGGTGAGAGCAAGGATTATTAG back to top
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