rna-TanjilR_09049
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_09049 vs. DB:Swiss
Match: SPHK2_ARATH (Sphingosine kinase 2 OS=Arabidopsis thaliana OX=3702 GN=SPHK2 PE=1 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 1.646e-35 Identity = 47/64 (73.44%), Postives = 57/64 (89.06%), Query Frame = 3
Query: 4017 IQVKAFILEPGPRTKDQGKEGIIDSDGEVLARGKGSYKCEKKALMTYDKLQITVDQGLATVFTP 4208
I+VKAF+LEPG + KEGIIDSDGEVLARGK +YKC++KALM+YDKLQ+TVDQGLAT+F+P
Sbjct: 416 IKVKAFVLEPGALVDEPDKEGIIDSDGEVLARGKRTYKCDQKALMSYDKLQVTVDQGLATLFSP 479 HSP 2 Score: 72.7886 bits (177), Expect = 1.646e-35 Identity = 35/57 (61.40%), Postives = 42/57 (73.68%), Query Frame = 1
Query: 3742 VTW*SSFVIIICRMQFSDGYLDLIVMKNCPKLPLLSLMSELSTGGHVKSPYVTYIKV 3912
V W S + +FSDGYLDLIV+KNCPKL LLSLM + S+G HV+SPY+ YIKV
Sbjct: 362 VPWGSENTLTAPAAKFSDGYLDLIVLKNCPKLVLLSLMRQTSSGTHVESPYIVYIKV 418 HSP 3 Score: 109.383 bits (272), Expect = 2.065e-23 Identity = 58/123 (47.15%), Postives = 72/123 (58.54%), Query Frame = 3
Query: 738 CYVMNSEMLKEHAGRPKRLFVFVNPYGGKKSGKKIFVDKVKPLLEDAQIQITVQGTLNSSTTLYFHVATCXXXXXXXXXXXXXXXXXSETKHQLHAKEIAHSLDITKYDGIVCVSGDGILVEV 1106
CY + + + GRPKRL VFVNP+GGKKS ++IFV +VKPL EDA +Q+ +Q ETK+QLHAKE S+D++KYDGIVCVSGDGILVEV
Sbjct: 100 CYKLRQYL--DSLGRPKRLLVFVNPFGGKKSAREIFVKEVKPLFEDADVQLEIQ----------------------------------ETKYQLHAKEFVKSMDVSKYDGIVCVSGDGILVEV 186 HSP 4 Score: 105.531 bits (262), Expect = 3.876e-22 Identity = 49/99 (49.49%), Postives = 61/99 (61.62%), Query Frame = 3
Query: 3033 ALCRFINLRHYNGCVSFVPAPGFEAYGEPTSYRGKSISKGNNIDLSEAESVKLQRFCYQGPEIDVENLNWRIINGPFISIWLHNVPWGAEDTMAAPDAK 3329
AL R I LR YNG + F+PAPGFE YG+P S L + V + YQGPE E+L WR + GPF++IWLHNVPWG+E+T+ AP AK
Sbjct: 289 ALQRIICLRRYNGRILFLPAPGFEGYGQPAS-----------CSLYQEPHVSDKEVGYQGPETKFEDLEWREMKGPFVTIWLHNVPWGSENTLTAPAAK 376 HSP 5 Score: 79.337 bits (194), Expect = 9.440e-14 Identity = 46/102 (45.10%), Postives = 63/102 (61.76%), Query Frame = 1
Query: 25 LITDRVTVNGTVTPLALLADGRLWWSESGQR-CLVVEKDVLGFIADGPYIKIKTLVEKRDG--CCSS--GHLVRNDVVFQPSSHELHALWCNKLREFIDSIG 315
+IT V ++G + L L ADG L W+E G R L ++KDVLGFI +G I++K +VEK G CC G VR D VF+P + WC KLR+++DS+G
Sbjct: 12 IITGIVFIDGELAMLTLTADGELRWTEYGLRQYLSMKKDVLGFIVEGKQIRVKAVVEKEAGGICCGQFGGDFVRKDFVFEPLIDQNG--WCYKLRQYLDSLG 111 HSP 6 Score: 68.1662 bits (165), Expect = 2.768e-10 Identity = 39/88 (44.32%), Postives = 45/88 (51.14%), Query Frame = 3
Query: 1755 GTGNGIAKSLLDAVGDPCAVANAVLAIIRGFNPLISFKHVISLPVYFRVLLKV*NAY*ILTGHKRLLDVATITQGETRFFSVLMLAWG 2018
GTGNG+ KSLLD VG C +A ++IIRG HKR +DVATI QG T+FFSVLMLAWG
Sbjct: 210 GTGNGMIKSLLDTVGLRCCANSATISIIRG--------------------------------HKRSVDVATIAQGNTKFFSVLMLAWG 265
BLAST of rna-TanjilR_09049 vs. DB:Swiss
Match: SPHK1_ARATH (Sphingosine kinase 1 OS=Arabidopsis thaliana OX=3702 GN=SPHK1 PE=1 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 4.041e-23 Identity = 56/110 (50.91%), Postives = 68/110 (61.82%), Query Frame = 3
Query: 777 GRPKRLFVFVNPYGGKKSGKKIFVDKVKPLLEDAQIQITVQGTLNSSTTLYFHVATCXXXXXXXXXXXXXXXXXSETKHQLHAKEIAHSLDITKYDGIVCVSGDGILVEV 1106
GRPK+L VFVNP+GGKK+ +KIF ++VKPL EDA IQ+ +Q ETK+QLHAKEI S+D++KYDGIVCVSGDGILVEV
Sbjct: 116 GRPKKLLVFVNPFGGKKTARKIFQEEVKPLFEDANIQLEIQ----------------------------------ETKYQLHAKEIVRSMDVSKYDGIVCVSGDGILVEV 191 HSP 2 Score: 106.686 bits (265), Expect = 1.694e-22 Identity = 55/123 (44.72%), Postives = 75/123 (60.98%), Query Frame = 3
Query: 3033 ALCRFINLRHYNGCVSFVPAPGFEAYGEPTSYRGKSISKGNNIDLSEAESVKLQRFCYQGPEIDVENLNWRIINGPFISIWLHNVPWGAEDTMAAPDAKVGLCV*EFVVLLSVTLVCFLNVDT 3401
L R I LR Y+G + FVPAPGFE+YG+ S +ID + S K YQGP+ +ENL+WR + GPF+S+WLHNVPWGAE+T+AAPDAK + +V+ + L++ T
Sbjct: 294 GLQRIICLRQYHGRILFVPAPGFESYGQRASC---------SIDKEPSGSDKT--LVYQGPDSKLENLDWREMKGPFVSVWLHNVPWGAENTLAAPDAKFSDGFLDLIVMKDCPKLALLSLMT 405 HSP 3 Score: 104.375 bits (259), Expect = 1.024e-21 Identity = 52/91 (57.14%), Postives = 70/91 (76.92%), Query Frame = 3
Query: 3951 PKVSMH*LNWLTDFGNLCILQQ-----IQVKAFILEPGPRTKDQGKEGIIDSDGEVLARGKGSYKCEKKALMTYDKLQITVDQGLATVFTP 4208
PK+++ L+ +T + +Q ++VKAF+LEPG R + KEGIIDSDGEVLARG+ SYKC++KALM+YDKLQI+VDQGLAT+F+P
Sbjct: 396 PKLAL--LSLMTKLSDGTHVQSPYASYLKVKAFVLEPGARIDEPDKEGIIDSDGEVLARGRKSYKCDQKALMSYDKLQISVDQGLATLFSP 484 HSP 4 Score: 91.6633 bits (226), Expect = 1.196e-17 Identity = 46/100 (46.00%), Postives = 65/100 (65.00%), Query Frame = 1
Query: 25 LITDRVTVNGTVTPLALLADGRLWWSESGQRCLVVEKDVLGFIADGPYIKIKTLVEKRDGCC---SSGHLVRNDVVFQPSSHELHALWCNKLREFIDSIG 315
+I+DRV VNG VTPL L A+G L +ESG+R + K++L F+ +G +++KTLVEK G C S+G RND VF+P S E LW +K + + S+G
Sbjct: 17 IISDRVLVNGVVTPLTLTAEGELRSTESGRRKSTLAKEILSFVVEGNKVRVKTLVEKGGGICCRGSAGDYARNDFVFEPLSDESRKLWSDKFHQHLVSLG 116 HSP 5 Score: 72.4034 bits (176), Expect = 1.313e-11 Identity = 33/57 (57.89%), Postives = 43/57 (75.44%), Query Frame = 1
Query: 3742 VTW*SSFVIIICRMQFSDGYLDLIVMKNCPKLPLLSLMSELSTGGHVKSPYVTYIKV 3912
V W + + +FSDG+LDLIVMK+CPKL LLSLM++LS G HV+SPY +Y+KV
Sbjct: 367 VPWGAENTLAAPDAKFSDGFLDLIVMKDCPKLALLSLMTKLSDGTHVQSPYASYLKV 423 HSP 6 Score: 64.3142 bits (155), Expect = 4.447e-9 Identity = 37/88 (42.05%), Postives = 46/88 (52.27%), Query Frame = 3
Query: 1755 GTGNGIAKSLLDAVGDPCAVANAVLAIIRGFNPLISFKHVISLPVYFRVLLKV*NAY*ILTGHKRLLDVATITQGETRFFSVLMLAWG 2018
G+GNG+ KSLL+ VG PC+ +A ++IIRG R LDVATI+QG T+FFSVLMLAWG
Sbjct: 215 GSGNGMIKSLLEPVGLPCSATSATISIIRG--------------------------------RTRSLDVATISQGTTKFFSVLMLAWG 270
BLAST of rna-TanjilR_09049 vs. DB:Swiss
Match: LCB5_YEAST (Sphingoid long chain base kinase 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=LCB5 PE=1 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 6.538e-9 Identity = 44/120 (36.67%), Postives = 57/120 (47.50%), Query Frame = 3
Query: 756 EMLK---EHAGRPKRLFVFVNPYGGKKSGKKIFVDKVKPLLEDAQIQITVQGTLNSSTTLYFHVATCXXXXXXXXXXXXXXXXXSETKHQLHAKEIAHSLDITKYDGIVCVSGDGILVEV 1106
E+LK ++ R K +FV +NP+GGK KK+F+ K KPLL ++ I V +Y TK+ HA EIA +DI KYD I C SGDGI EV
Sbjct: 256 EILKRSYKNTRRNKSIFVIINPFGGKGKAKKLFMTKAKPLLLASRCSIEV---------VY-------------------------TKYPGHAIEIAREMDIDKYDTIACASGDGIPHEV 341
BLAST of rna-TanjilR_09049 vs. DB:Swiss
Match: LCB4_YEAST (Sphingoid long chain base kinase 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=LCB4 PE=1 SV=1) HSP 1 Score: 60.8474 bits (146), Expect = 7.014e-8 Identity = 35/113 (30.97%), Postives = 54/113 (47.79%), Query Frame = 3
Query: 768 EHAGRPKRLFVFVNPYGGKKSGKKIFVDKVKPLLEDAQIQITVQGTLNSSTTLYFHVATCXXXXXXXXXXXXXXXXXSETKHQLHAKEIAHSLDITKYDGIVCVSGDGILVEV 1106
E++ R + + V +NP+GGK + K +F+ K +P+L ++ +I + + TK+ HA +IA LDI+KYD I C SGDGI EV
Sbjct: 221 ENSKRNRSILVIINPHGGKGTAKNLFLTKARPILVESGCKIEI----------------------------------AYTKYARHAIDIAKDLDISKYDTIACASGDGIPYEV 299 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_09049 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 4
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_09049_La_Tanjil_v1.0 ID=rna-TanjilR_09049_La_Tanjil_v1.0; Name=rna-TanjilR_09049; organism=Lupinus angustifolius; type=mRNA; length=4214bpback to top protein sequence of rna-TanjilR_09049_La_Tanjil_v1.0 >rna-TanjilR_09049_La_Tanjil_v1.0 ID=rna-TanjilR_09049_La_Tanjil_v1.0; Name=rna-TanjilR_09049_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=485bpback to top mRNA from alignment at Chr_LG19-CM007379.1:17142037..17146250- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_09049_La_Tanjil_v1.0 ID=rna-TanjilR_09049_La_Tanjil_v1.0; Name=rna-TanjilR_09049; organism=Lupinus angustifolius; type=mRNA; length=4214bp; location=Sequence derived from: Chr_LG19-CM007379.1:17142037..17146250- (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG19-CM007379.1:17142037..17146250- >rna-TanjilR_09049_La_Tanjil_v1.0 ID=rna-TanjilR_09049_La_Tanjil_v1.0; Name=rna-TanjilR_09049; organism=Lupinus angustifolius; type=CDS; length=1458bp; location=Sequence derived from: Chr_LG19-CM007379.1:17142037..17146250- (Lupinus angustifoliusback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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