rna-TanjilR_26462

Transcript Overview
Namerna-TanjilR_26462
Unique Namerna-TanjilR_26462_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length1357
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG20-CM007380.1supercontigChr_LG20-CM007380.1:64045..65401 +Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananR483Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiR0829Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR0830Cicer arietinum ICC 4958 genome v2Cicer arietinum
anccR0876Cajanus cajan Asha genome v1.0Cajanus cajan
ancaR0699Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancrR0844Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
anpsR0594Pisum sativum Cameor genome v1aPisum sativum
anpvR0784Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anvuR0693Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anasR0779Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anzwsR0660Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anzwsR0679Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anvfhR0682Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
antifR0683Vicia faba cv. Tiffany genome v1.0Vicia faba
anvrvR0669Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvuaR0649Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvssR0726Vicia sativa cv. Studenica genome v1.0Vicia sativa
ancanR0643Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
anavjR0732Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
ancarR0683Cicer arietinum
anccaR0653Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR0728Vigna umbellata FF25 genome v1.0Vigna umbellata
anvvaR0689Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvstR0775Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0786Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvunR0660Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anpvfR0822Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris

Orthologs
Gene/TranscriptAssemblySpecies
Va02G066000.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Cr_08468.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Cc_v2.0_04805.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Vum_08G00563.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Ca_10367.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Psat06G0552800-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
LR48_mrnaVigan02g220400Vigna angularis Jingnong 6 genome v1.1Vigna angularis
rna-XM_004496611.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
rna-KK1_007675Cajanus cajan Asha genome v1.0Cajanus cajan
Vigun07g234600.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
PvulFLAVERTChr07.385Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Vigun07g234600.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
evm.model.Chr07.546Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Psat6g205200.1Pisum sativum Cameor genome v1aPisum sativum
XM_058913743.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
rna-XM_014655755.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
jg40979.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vigst.08G055500.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Ca_04550Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Vigan.08G069900.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Phvul.007G062200.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-TanjilR_04650Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_26462gene-TanjilG_26462_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_26462rna-TanjilR_26462_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_26462_La_Tanjil_v1.0rna-TanjilR_26462_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_26462_La_Tanjil_v1.0-exon-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:64045..64257rna-TanjilR_26462_La_Tanjil_v1.0-exon-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:64045..64257Lupinus angustifoliusexon
rna-TanjilR_26462_La_Tanjil_v1.0-exon-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:64408..64594rna-TanjilR_26462_La_Tanjil_v1.0-exon-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:64408..64594Lupinus angustifoliusexon
rna-TanjilR_26462_La_Tanjil_v1.0-exon-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:64800..64907rna-TanjilR_26462_La_Tanjil_v1.0-exon-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:64800..64907Lupinus angustifoliusexon
rna-TanjilR_26462_La_Tanjil_v1.0-exon-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:65268..65401rna-TanjilR_26462_La_Tanjil_v1.0-exon-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:65268..65401Lupinus angustifoliusexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_26462_La_Tanjil_v1.0-CDS-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:64045..64257rna-TanjilR_26462_La_Tanjil_v1.0-CDS-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:64045..64257Lupinus angustifoliusCDS
rna-TanjilR_26462_La_Tanjil_v1.0-CDS-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:64408..64594rna-TanjilR_26462_La_Tanjil_v1.0-CDS-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:64408..64594Lupinus angustifoliusCDS
rna-TanjilR_26462_La_Tanjil_v1.0-CDS-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:64800..64907rna-TanjilR_26462_La_Tanjil_v1.0-CDS-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:64800..64907Lupinus angustifoliusCDS
rna-TanjilR_26462_La_Tanjil_v1.0-CDS-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:65268..65401rna-TanjilR_26462_La_Tanjil_v1.0-CDS-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:65268..65401Lupinus angustifoliusCDS


Homology
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BLAST of rna-TanjilR_26462 vs. DB:Swiss
Match: P24B3_ARATH (Transmembrane emp24 domain-containing protein p24beta3 OS=Arabidopsis thaliana OX=3702 GN=At3g22845 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.797e-52
Identity = 98/187 (52.41%), Postives = 109/187 (58.29%), Query Frame = 1 
Query:    1 MDETQRKM-CGVLMYLMLSCLFGRIDSLSVTVNDVECVYDYVLYEGDSVSGNFVVVDHHIFWSSDHPGIDFTVSIISIFSYLVTNCFNYSLINXXXXXXXXXXXIE*CVVLCFLDFPVLHLQVTSPAGNTVHSIKGTSGDKFQFKAPTHGTYKFCFHNPYSTPETVSFYIHVGHIPSEHDLAKDGML 558
            M+  Q K+   VL+ L+L     +I SLSVTVND ECV +YVLYEGD+VSGNFVVVDH IFW SDH                                                  P L   VTSPAGN V ++KGTSGDKF+FKAP  G YKFCFHNPYSTPETVSFYIHVGHIP+EHDLAKD  L
Sbjct:    1 MERRQAKIHVFVLIGLILLNSINQISSLSVTVNDEECVQEYVLYEGDTVSGNFVVVDHDIFWGSDH--------------------------------------------------PGLDFTVTSPAGNIVQTLKGTSGDKFEFKAPKSGMYKFCFHNPYSTPETVSFYIHVGHIPNEHDLAKDEHL 137

HSP 2 Score: 73.9442 bits (180), Expect = 6.591e-14
Identity = 33/37 (89.19%), Postives = 35/37 (94.59%), Query Frame = 2 
Query:  755 EHLDPVNVKIAELREALESVAAEQKYLRARDARHRHS 865
            EHLDPVNVKIAELREALESV AEQKYL+ARD RHRH+
Sbjct:  135 EHLDPVNVKIAELREALESVVAEQKYLKARDTRHRHT 171

HSP 3 Score: 73.1738 bits (178), Expect = 1.572e-13
Identity = 35/44 (79.55%), Postives = 38/44 (86.36%), Query Frame = 2 
Query: 1223 ANESTRKRVVFYTVGEYLLLAAVSVLQVIYIRHLFGKSVAYNRV 1354
             NESTRKRV+FYTVGEY+ LAA S LQV+YIR LF KSVAYNRV
Sbjct:  171 TNESTRKRVIFYTVGEYIFLAAASGLQVLYIRKLFSKSVAYNRV 214
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_26462 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
P24B3_ARATH8.797e-5252.41Transmembrane emp24 domain-containing protein p24b... [more]
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InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009038GOLD domainSMARTSM01190EMP24_GP25L_2coord: 26..205
e-value: 2.6E-54
score: 196.4
IPR009038GOLD domainPFAMPF01105EMP24_GP25Lcoord: 32..204
e-value: 4.0E-43
score: 147.5
IPR009038GOLD domainPROSITEPS50866GOLDcoord: 34..121
score: 15.459
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..19
score: 6.0
IPR036598GOLD domain superfamilySUPERFAMILY101576Supernatant protein factor (SPF), C-terminal domaincoord: 44..128

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_26462_La_Tanjil_v1.0 ID=rna-TanjilR_26462_La_Tanjil_v1.0; Name=rna-TanjilR_26462; organism=Lupinus angustifolius; type=mRNA; length=1357bp
ATGGATGAAACGCAGAGAAAGATGTGTGGGGTTTTGATGTATTTGATGCT
GAGTTGCTTATTTGGTCGCATTGATTCGTTATCAGTGACTGTGAATGACG
TTGAGTGCGTCTATGACTATGTACTCTACGAAGGTGATTCCGTTTCTGGT
AACTTTGTTGTCGTTGACCATCACATTTTCTGGAGCTCCGATCACCCTGG
CATTGATTTCACCGTCAGTATTATCTCTATTTTCTCTTACCTAGTTACTA
ATTGCTTCAATTATTCACTCATCAACTTTTAGGGTTTTTAATTTTCTAGT
ACTAGTTCAATTGAGTGATGTGTGGTTCTATGTTTTTTGGATTTTCCTGT
ACTTCATCTGCAGGTAACATCTCCTGCAGGTAATACTGTCCACAGTATTA
AGGGAACCTCTGGCGATAAGTTTCAATTTAAAGCCCCCACGCACGGAACA
TATAAATTTTGCTTTCATAACCCATACTCCACACCTGAGACCGTTTCATT
CTACATCCATGTTGGTCATATTCCTTCTGAACATGACCTTGCCAAGGATG
GTATGTTGTCTTCTCTGTATAGTCTGACATTCTTAGTAGATTCTATTATC
GTattatcatattcatattttcGGGTATTATACACTGCAGCCATTTACTA
CTTACCCTAGGTACTTCTTTGCATCTGTAAAGAATGATTCAagtgttcca
ttttttgtaatttattgGACTTTGGGGCTTCCCTTTTTACTTTGATGCTT
TGCAGAGCATTTGGACCCGGTTAACGTTAAAATTGCTGAGCTCAGAGAGG
CACTAGAGTCTGTTGCAGCTGAACAAAAGTACTTGAGAGCTCGTGATGCA
AGGCATCGCCATAGTAAGTAGTTTTCTTTTCCATGAAAAGGGACTGTTCC
TTGAGAAAATCTGATTGTGTATATTTTTCTTGCAATCTTGCATGCATTTG
TACACTGTCCCTCCTCTTCATAGTAGTGATGATTCCTAGACATTATGTAG
CCAAAAGAAATCTCATTTTGAGTTTATCCATCTAGCTACTAATTTTTAAG
ATATCTTAGCACTCATGAAGATGTGTTCTGGATATCCCTAAAGTTTTGGG
CTCTTAGTAGATAGCTTATCCACACTCCAATTTCTTTCATTCTTGTTGAA
TAAATATGCACATGGTTAAATAATACAATAGCTTTCTTCTAATAGCTTAA
CTCCATATTTATTTCTGATGTAGCTAACGAGAGCACACGTAAGCGTGTGG
TCTTCTACACTGTTGGAGAGTACCTTCTGTTGGCTGCTGTGAGTGTACTG
CAAGTCATATACATCAGACATCTTTTCGGCAAGTCAGTGGCCTACAACCG
TGTTTAG
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protein sequence of rna-TanjilR_26462_La_Tanjil_v1.0

>rna-TanjilR_26462_La_Tanjil_v1.0 ID=rna-TanjilR_26462_La_Tanjil_v1.0; Name=rna-TanjilR_26462_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=213bp
MDETQRKMCGVLMYLMLSCLFGRIDSLSVTVNDVECVYDYVLYEGDSVSG
NFVVVDHHIFWSSDHPGIDFTVTSPAGNTVHSIKGTSGDKFQFKAPTHGT
YKFCFHNPYSTPETVSFYIHVGHIPSEHDLAKDEHLDPVNVKIAELREAL
ESVAAEQKYLRARDARHRHTNESTRKRVVFYTVGEYLLLAAVSVLQVIYI
RHLFGKSVAYNRV
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mRNA from alignment at Chr_LG20-CM007380.1:64045..65401+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_26462_La_Tanjil_v1.0 ID=rna-TanjilR_26462_La_Tanjil_v1.0; Name=rna-TanjilR_26462; organism=Lupinus angustifolius; type=mRNA; length=1357bp; location=Sequence derived from: Chr_LG20-CM007380.1:64045..65401+ (Lupinus angustifolius
ATGGATGAAACGCAGAGAAAGATGTGTGGGGTTTTGATGTATTTGATGCT
GAGTTGCTTATTTGGTCGCATTGATTCGTTATCAGTGACTGTGAATGACG
TTGAGTGCGTCTATGACTATGTACTCTACGAAGGTGATTCCGTTTCTGGT
AACTTTGTTGTCGTTGACCATCACATTTTCTGGAGCTCCGATCACCCTGG
CATTGATTTCACCGTCAGTATTATCTCTATTTTCTCTTACCTAGTTACTA
ATTGCTTCAATTATTCACTCATCAACTTTTAGGGTTTTTAATTTTCTAGT
ACTAGTTCAATTGAGTGATGTGTGGTTCTATGTTTTTTGGATTTTCCTGT
ACTTCATCTGCAGGTAACATCTCCTGCAGGTAATACTGTCCACAGTATTA
AGGGAACCTCTGGCGATAAGTTTCAATTTAAAGCCCCCACGCACGGAACA
TATAAATTTTGCTTTCATAACCCATACTCCACACCTGAGACCGTTTCATT
CTACATCCATGTTGGTCATATTCCTTCTGAACATGACCTTGCCAAGGATG
GTATGTTGTCTTCTCTGTATAGTCTGACATTCTTAGTAGATTCTATTATC
GTattatcatattcatattttcGGGTATTATACACTGCAGCCATTTACTA
CTTACCCTAGGTACTTCTTTGCATCTGTAAAGAATGATTCAagtgttcca
ttttttgtaatttattgGACTTTGGGGCTTCCCTTTTTACTTTGATGCTT
TGCAGAGCATTTGGACCCGGTTAACGTTAAAATTGCTGAGCTCAGAGAGG
CACTAGAGTCTGTTGCAGCTGAACAAAAGTACTTGAGAGCTCGTGATGCA
AGGCATCGCCATAGTAAGTAGTTTTCTTTTCCATGAAAAGGGACTGTTCC
TTGAGAAAATCTGATTGTGTATATTTTTCTTGCAATCTTGCATGCATTTG
TACACTGTCCCTCCTCTTCATAGTAGTGATGATTCCTAGACATTATGTAG
CCAAAAGAAATCTCATTTTGAGTTTATCCATCTAGCTACTAATTTTTAAG
ATATCTTAGCACTCATGAAGATGTGTTCTGGATATCCCTAAAGTTTTGGG
CTCTTAGTAGATAGCTTATCCACACTCCAATTTCTTTCATTCTTGTTGAA
TAAATATGCACATGGTTAAATAATACAATAGCTTTCTTCTAATAGCTTAA
CTCCATATTTATTTCTGATGTAGCTAACGAGAGCACACGTAAGCGTGTGG
TCTTCTACACTGTTGGAGAGTACCTTCTGTTGGCTGCTGTGAGTGTACTG
CAAGTCATATACATCAGACATCTTTTCGGCAAGTCAGTGGCCTACAACCG
TGTTTAG
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Coding sequence (CDS) from alignment at Chr_LG20-CM007380.1:64045..65401+

>rna-TanjilR_26462_La_Tanjil_v1.0 ID=rna-TanjilR_26462_La_Tanjil_v1.0; Name=rna-TanjilR_26462; organism=Lupinus angustifolius; type=CDS; length=642bp; location=Sequence derived from: Chr_LG20-CM007380.1:64045..65401+ (Lupinus angustifolius
ATGGATGAAACGCAGAGAAAGATGTGTGGGGTTTTGATGTATTTGATGCT
GAGTTGCTTATTTGGTCGCATTGATTCGTTATCAGTGACTGTGAATGACG
TTGAGTGCGTCTATGACTATGTACTCTACGAAGGTGATTCCGTTTCTGGT
AACTTTGTTGTCGTTGACCATCACATTTTCTGGAGCTCCGATCACCCTGG
CATTGATTTCACCGTAACATCTCCTGCAGGTAATACTGTCCACAGTATTA
AGGGAACCTCTGGCGATAAGTTTCAATTTAAAGCCCCCACGCACGGAACA
TATAAATTTTGCTTTCATAACCCATACTCCACACCTGAGACCGTTTCATT
CTACATCCATGTTGGTCATATTCCTTCTGAACATGACCTTGCCAAGGATG
AGCATTTGGACCCGGTTAACGTTAAAATTGCTGAGCTCAGAGAGGCACTA
GAGTCTGTTGCAGCTGAACAAAAGTACTTGAGAGCTCGTGATGCAAGGCA
TCGCCATACTAACGAGAGCACACGTAAGCGTGTGGTCTTCTACACTGTTG
GAGAGTACCTTCTGTTGGCTGCTGTGAGTGTACTGCAAGTCATATACATC
AGACATCTTTTCGGCAAGTCAGTGGCCTACAACCGTGTTTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR009038GOLD_dom
IPR036598GOLD_dom_sf