rna-TanjilR_17008
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_17008 vs. DB:Swiss
Match: GL24_ARATH (Germin-like protein subfamily 2 member 4 OS=Arabidopsis thaliana OX=3702 GN=GLP10 PE=2 SV=1) HSP 1 Score: 280.411 bits (716), Expect = 9.582e-94 Identity = 140/208 (67.31%), Postives = 165/208 (79.33%), Query Frame = 1 Query: 334 LVIHNQLMLYL*PLIHYMLC-----AGVKVNGFACKAETNVTESDFFFAGLAKPGIINNTVGSLVTAANVEKIPGLNTLGVSFSRIDYKAGGLNPPHTHPRATEIVFVLEGQLDVGFITTANKLISKTIKKGEIFVFPKGLVHYQKNNGDNH-AAVISAFNSQLPGTVSIAATLFTSTPTVPDDVLAKAFQIETKLVDAIKAKLAPKK 939 L+ N ++L P LC +G+KVNGF CK E+N+T SDFFFAG+ KP ++NNTVGS VT ANVEKI GLNTLGVS +RIDY GGLNPPHTHPRATE++FVLEG+LDVGFITTANKL +KT+KKGE+FVFP+GL+HYQKNN A+VISAFNSQLPGT SIAATLFT+TP +PD VL FQI TK ++ IK+K APKK Sbjct: 12 LLSLNVIVLAYDPDTLQDLCVADRTSGIKVNGFTCKPESNITASDFFFAGIGKPAVVNNTVGSAVTGANVEKIAGLNTLGVSLARIDYAPGGLNPPHTHPRATEVIFVLEGELDVGFITTANKLFAKTVKKGEVFVFPRGLIHYQKNNDKAKPASVISAFNSQLPGTQSIAATLFTATPAIPDHVLTTTFQIGTKEIEKIKSKFAPKK 219
BLAST of rna-TanjilR_17008 vs. DB:Swiss
Match: GL22_ARATH (Germin-like protein subfamily 2 member 2 OS=Arabidopsis thaliana OX=3702 GN=At1g02335 PE=2 SV=1) HSP 1 Score: 277.33 bits (708), Expect = 1.724e-92 Identity = 128/181 (70.72%), Postives = 155/181 (85.64%), Query Frame = 1 Query: 397 GVKVNGFACKAETNVTESDFFFAGLAKPGIINNTVGSLVTAANVEKIPGLNTLGVSFSRIDYKAGGLNPPHTHPRATEIVFVLEGQLDVGFITTANKLISKTIKKGEIFVFPKGLVHYQKNNGDNHAAVISAFNSQLPGTVSIAATLFTSTPTVPDDVLAKAFQIETKLVDAIKAKLAPKK 939 G K+NGF CK N+TESDFFFAG++KP +IN+T+GS VT ANVEKIPGLNTL VS +RIDY GGLNPPHTHPRATE+V+VLEG+L+VGFITTANKL +KTIK GE+FVFP+GLVH+QKNNG + A+V+SAFNSQLPGT S+AATLF + P +P+DVL K FQ+ +K+VD IK +LA KK Sbjct: 39 GTKLNGFPCKETLNITESDFFFAGISKPAVINSTMGSAVTGANVEKIPGLNTLSVSLARIDYAPGGLNPPHTHPRATEVVYVLEGELEVGFITTANKLFTKTIKIGEVFVFPRGLVHFQKNNGKSPASVLSAFNSQLPGTASVAATLFAAEPALPEDVLTKTFQVGSKMVDKIKERLATKK 219
BLAST of rna-TanjilR_17008 vs. DB:Swiss
Match: GL52_ORYSJ (Germin-like protein 5-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0277500 PE=2 SV=1) HSP 1 Score: 271.937 bits (694), Expect = 1.781e-90 Identity = 134/184 (72.83%), Postives = 153/184 (83.15%), Query Frame = 1 Query: 388 LCAGVKVNGFACKAETNVTESDFFFAGLAKPGIINNTVGSLVTAANVEKIPGLNTLGVSFSRIDYKAGGLNPPHTHPRATEIVFVLEGQLDVGFITTANKLISKTIKKGEIFVFPKGLVHYQKNNGDNHAAVISAFNSQLPGTVSIAATLFTSTPTVPDDVLAKAFQIETKLVDAIKAKLAPKK 939 L + VKVNGFACKA VTE DF+F GLA G NNT GS+VT ANVEK+PGLNTLGVS SRIDY GGLNPPHTHPRATE+VFVL+G LDVGFITTANKL +KTI G++FVFP+GL+H+QKNNGD AAVISAFNSQLPGT S+A TLF ++P VPD VL KAFQ+ TK V+ IK++LAPKK Sbjct: 39 LTSAVKVNGFACKAA--VTEDDFYFKGLAAAGNTNNTYGSVVTGANVEKLPGLNTLGVSMSRIDYAPGGLNPPHTHPRATEMVFVLQGTLDVGFITTANKLYTKTISAGDVFVFPRGLLHFQKNNGDTPAAVISAFNSQLPGTQSLAMTLFAASPEVPDGVLTKAFQVGTKEVEKIKSRLAPKK 220
BLAST of rna-TanjilR_17008 vs. DB:Swiss
Match: GL21_ARATH (Germin-like protein subfamily 2 member 1 OS=Arabidopsis thaliana OX=3702 GN=GLP4 PE=2 SV=2) HSP 1 Score: 268.085 bits (684), Expect = 5.513e-89 Identity = 129/184 (70.11%), Postives = 150/184 (81.52%), Query Frame = 1 Query: 388 LCAGVKVNGFACKAETNVTESDFFFAGLAKPGIINNTVGSLVTAANVEKIPGLNTLGVSFSRIDYKAGGLNPPHTHPRATEIVFVLEGQLDVGFITTANKLISKTIKKGEIFVFPKGLVHYQKNNGDNHAAVISAFNSQLPGTVSIAATLFTSTPTVPDDVLAKAFQIETKLVDAIKAKLAPKK 939 L +G+K+NGF CK VT +DFF GLAKPG+ NNT G+LVT ANV IPGLNTLGVS SRIDY GGLNPPHTHPRATE+VFVLEG LDVGF+TTANKLIS+++KKG++F FPKGLVH+QKNNGD A+VI+AFNSQLPGT S+ ATLF STP VPD++LA+AFQ V IK+K PKK Sbjct: 36 LPSGIKINGFPCKDAATVTSADFFSQGLAKPGLTNNTFGALVTGANVMTIPGLNTLGVSLSRIDYAPGGLNPPHTHPRATEVVFVLEGTLDVGFLTTANKLISQSLKKGDVFAFPKGLVHFQKNNGDVPASVIAAFNSQLPGTQSLGATLFGSTPPVPDNILAQAFQTSPGTVKHIKSKFQPKK 219
BLAST of rna-TanjilR_17008 vs. DB:Swiss
Match: RHRE_PEA (Rhicadhesin receptor OS=Pisum sativum OX=3888 GN=GER1 PE=1 SV=2) HSP 1 Score: 262.692 bits (670), Expect = 7.350e-87 Identity = 131/180 (72.78%), Postives = 145/180 (80.56%), Query Frame = 1 Query: 400 VKVNGFACKAETNVTESDFFFAGLAKPGIINNTVGSLVTAANVEKIPGLNTLGVSFSRIDYKAGGLNPPHTHPRATEIVFVLEGQLDVGFITTANKLISKTIKKGEIFVFPKGLVHYQKNNGDNHAAVISAFNSQLPGTVSIAATLFTSTPTVPDDVLAKAFQIETKLVDAIKAKLAPKK 939 + VNGFACK +NVT DFF L K G NNT GSLVT ANV++IPGLNTLGVS +RIDY GGLNPPHTHPRATE+VFVLEGQLDVGFITT N+LI+KTI KGE FVFPKGLVH+QKNNG A VI+ FNSQLPGTV+I TLF +TP VPD+VL KAFQI TK V IK+K APKK Sbjct: 38 ILVNGFACKPASNVTAEDFFSNLLVKQGATNNTFGSLVTGANVQRIPGLNTLGVSMARIDYAPGGLNPPHTHPRATEMVFVLEGQLDVGFITTTNQLIAKTIAKGETFVFPKGLVHFQKNNGWEPATVIAGFNSQLPGTVNIPLTLFNATPPVPDNVLTKAFQIGTKEVQKIKSKFAPKK 217
BLAST of rna-TanjilR_17008 vs. DB:Swiss
Match: NEC1_NICLS (Nectarin-1 OS=Nicotiana langsdorffii x Nicotiana sanderae OX=164110 GN=NECI PE=1 SV=1) HSP 1 Score: 251.521 bits (641), Expect = 2.753e-82 Identity = 125/184 (67.93%), Postives = 148/184 (80.43%), Query Frame = 1 Query: 388 LCAGVKVNGFACKAETNVTESDFFFAGLAKPGIINNTVGSLVTAANVEKIPGLNTLGVSFSRIDYKAGGLNPPHTHPRATEIVFVLEGQLDVGFITTANKLISKTIKKGEIFVFPKGLVHYQKNNGDNHAAVISAFNSQLPGTVSIAATLFTSTPTVPDDVLAKAFQIETKLVDAIKAKLAPKK 939 L + VKVNGF CK TN T +DF ++KPG NN GS+VT ANVE++PGLNTLGVS +RIDY GG+NPPHTHPRA+E+VFV+EG+LDVGFITTAN L+SK I KGE+FVFP+GLVH+QKNNG+ AAVISAFNSQLPGT SI TLF ++P VPDDVLA+ FQI T+ V IK+K AP K Sbjct: 46 LHSKVKVNGFPCK--TNFTAADFSSLAISKPGATNNKFGSVVTTANVEQVPGLNTLGVSLARIDYAPGGINPPHTHPRASEMVFVMEGELDVGFITTANVLVSKKIIKGEVFVFPRGLVHFQKNNGEVPAAVISAFNSQLPGTQSIPITLFGASPPVPDDVLAQTFQINTEDVQQIKSKFAPVK 227
BLAST of rna-TanjilR_17008 vs. DB:Swiss
Match: NEC1_NICPL (Nectarin-1 OS=Nicotiana plumbaginifolia OX=4092 GN=NEC1 PE=1 SV=1) HSP 1 Score: 249.595 bits (636), Expect = 1.505e-81 Identity = 124/184 (67.39%), Postives = 146/184 (79.35%), Query Frame = 1 Query: 388 LCAGVKVNGFACKAETNVTESDFFFAGLAKPGIINNTVGSLVTAANVEKIPGLNTLGVSFSRIDYKAGGLNPPHTHPRATEIVFVLEGQLDVGFITTANKLISKTIKKGEIFVFPKGLVHYQKNNGDNHAAVISAFNSQLPGTVSIAATLFTSTPTVPDDVLAKAFQIETKLVDAIKAKLAPKK 939 L + VKVNGF CK TN T +DF ++KPG NN GS VT ANVE++PGLNTLGVS +RIDY GG+NPPHTHPRA+E+VFV+EG+LDVGFITTAN L+SK I KGE+FVFP+GLVH+QKNNG AAV+SAFNSQLPGT SI TLF ++PTVPDDVLA+ FQI + V IK+K AP K Sbjct: 46 LHSKVKVNGFPCK--TNFTAADFSSFAISKPGATNNKFGSKVTTANVEQVPGLNTLGVSLARIDYAPGGINPPHTHPRASEMVFVMEGELDVGFITTANVLVSKQITKGEVFVFPRGLVHFQKNNGKIPAAVVSAFNSQLPGTQSIPITLFGASPTVPDDVLAQTFQINIEDVQQIKSKFAPAK 227
BLAST of rna-TanjilR_17008 vs. DB:Swiss
Match: GL13_ORYSJ (Germin-like protein 1-3 OS=Oryza sativa subsp. japonica OX=39947 GN=GER8 PE=2 SV=1) HSP 1 Score: 244.202 bits (622), Expect = 1.885e-79 Identity = 114/180 (63.33%), Postives = 142/180 (78.89%), Query Frame = 1 Query: 400 VKVNGFACKAETNVTESDFFFAGLAKPGIINNTVGSLVTAANVEKIPGLNTLGVSFSRIDYKAGGLNPPHTHPRATEIVFVLEGQLDVGFITTANKLISKTIKKGEIFVFPKGLVHYQKNNGDNHAAVISAFNSQLPGTVSIAATLFTSTPTVPDDVLAKAFQIETKLVDAIKAKLAPKK 939 +++NGF CK NVT +DFFF GL K G N VGS+VTAA+VE +PGLNT+GVS +RIDY GLNPPHTHPRATEI+FV+EG LDVGF+TTANKL ++T+ KGE+FVFP+GLVH+QKNNG+ A I+A NSQLPGT SIAA LF + P +P D LA+AFQ++ +V+ IK+K P K Sbjct: 43 LRLNGFPCKRIENVTANDFFFDGLMKAGNTGNAVGSVVTAASVESLPGLNTMGVSMARIDYAPWGLNPPHTHPRATEIIFVVEGSLDVGFVTTANKLFTRTVCKGEVFVFPRGLVHFQKNNGNTPAFAIAALNSQLPGTQSIAAALFGAAPPLPSDTLARAFQVDGGMVEFIKSKFVPPK 222
BLAST of rna-TanjilR_17008 vs. DB:Swiss
Match: GL32_ORYSJ (Putative germin-like protein 3-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0651800 PE=3 SV=1) HSP 1 Score: 241.891 bits (616), Expect = 1.457e-78 Identity = 111/179 (62.01%), Postives = 142/179 (79.33%), Query Frame = 1 Query: 400 VKVNGFACKAETNVTESDFFFAGLAKPGIINNTVGSLVTAANVEKIPGLNTLGVSFSRIDYKAGGLNPPHTHPRATEIVFVLEGQLDVGFITTANKLISKTIKKGEIFVFPKGLVHYQKNNGDNHAAVISAFNSQLPGTVSIAATLFTSTPTVPDDVLAKAFQIETKLVDAIKAKLAPK 936 +++NG CK NVT +DFFF GL G N VGSLVTAA+VE++PGLNT+GVS +RIDY GL+PPHTHPRATEI+FV EG LDVGF+TTANKL ++T+ KGE+FVFP+GLVH+Q+N+G+ A I+AFNSQLPGT SIA TLF + P +P D LA+AFQ++ +V++IK+K PK Sbjct: 43 LRLNGIPCKRLENVTANDFFFDGLTNAGNTTNAVGSLVTAASVERLPGLNTMGVSMARIDYAPWGLSPPHTHPRATEIMFVAEGTLDVGFVTTANKLFTRTVSKGEVFVFPRGLVHFQRNSGNTSALAIAAFNSQLPGTQSIADTLFGAAPPLPSDTLARAFQVDGGMVESIKSKFPPK 221
BLAST of rna-TanjilR_17008 vs. DB:Swiss
Match: GL11_ORYSJ (Germin-like protein 1-1 OS=Oryza sativa subsp. japonica OX=39947 GN=GER4 PE=2 SV=1) HSP 1 Score: 232.646 bits (592), Expect = 5.027e-75 Identity = 123/180 (68.33%), Postives = 142/180 (78.89%), Query Frame = 1 Query: 388 LCAGVKVNGFACKAETNVTESDFFFAGLAKPGIINNTVGSLVTAANVEKIPGLNTLGVSFSRIDYKAGGLNPPHTHPRATEIVFVLEGQLDVGFITTANKLISKTIKKGEIFVFPKGLVHYQKNNGDNHAAVISAFNSQLPGTVSIAATLFTSTPTVPDDVLAKAFQIETKLVDAIKAKL 927 L + VK+NGF CKA NVT DFFFAGL PG NN GS VTAANV+ PG+NTLGVS +RIDY GG NPPHTHPRATEI+FVLEG L+VGFITTANKL +KT+ GE+FVFP+GLVH+Q+N G AAVI+AFNSQL GT +IAATLF + P VP DVLAKAF+++ VDAIKAK Sbjct: 38 LASPVKLNGFPCKA--NVTADDFFFAGLKNPGNTNNPAGSNVTAANVQSFPGVNTLGVSMARIDYAPGGQNPPHTHPRATEIIFVLEGVLEVGFITTANKLFTKTVTAGEVFVFPRGLVHFQQNRGHGPAAVIAAFNSQLQGTQAIAATLFAAAPPVPSDVLAKAFRVDVPQVDAIKAKF 215 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_17008 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_17008_La_Tanjil_v1.0 ID=rna-TanjilR_17008_La_Tanjil_v1.0; Name=rna-TanjilR_17008; organism=Lupinus angustifolius; type=mRNA; length=945bpback to top protein sequence of rna-TanjilR_17008_La_Tanjil_v1.0 >rna-TanjilR_17008_La_Tanjil_v1.0 ID=rna-TanjilR_17008_La_Tanjil_v1.0; Name=rna-TanjilR_17008_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=220bpback to top mRNA from alignment at Chr_LG20-CM007380.1:4438209..4439153+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_17008_La_Tanjil_v1.0 ID=rna-TanjilR_17008_La_Tanjil_v1.0; Name=rna-TanjilR_17008; organism=Lupinus angustifolius; type=mRNA; length=945bp; location=Sequence derived from: Chr_LG20-CM007380.1:4438209..4439153+ (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG20-CM007380.1:4438209..4439153+ >rna-TanjilR_17008_La_Tanjil_v1.0 ID=rna-TanjilR_17008_La_Tanjil_v1.0; Name=rna-TanjilR_17008; organism=Lupinus angustifolius; type=CDS; length=663bp; location=Sequence derived from: Chr_LG20-CM007380.1:4438209..4439153+ (Lupinus angustifoliusback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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