rna-TanjilR_01596
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_01596 vs. DB:Swiss
Match: RAB1B_ARATH (Ras-related protein RABB1b OS=Arabidopsis thaliana OX=3702 GN=RABB1B PE=2 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 3.622e-39 Identity = 64/71 (90.14%), Postives = 71/71 (100.00%), Query Frame = 3 Query: 1401 LTRRETFNHLASWLEDARQHANPNMTIILIGNKCDLSHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEE 1613
+TRRETFNHLASWLEDARQHANPNM+I+LIGNKCDL+H+RAVSKEEG+QFAKE+GLLFLEASARTAQNVEE
Sbjct: 88 ITRRETFNHLASWLEDARQHANPNMSIMLIGNKCDLAHKRAVSKEEGQQFAKEHGLLFLEASARTAQNVEE 158 HSP 2 Score: 43.5134 bits (101), Expect = 3.622e-39 Identity = 19/27 (70.37%), Postives = 24/27 (88.89%), Query Frame = 1 Query: 1720 HIPQAFTQAAAKILQNIQEGVFDVSNE 1800
++ +AF + AAKILQNIQ+GVFDVSNE
Sbjct: 155 NVEEAFIETAAKILQNIQDGVFDVSNE 181 HSP 3 Score: 102.834 bits (255), Expect = 1.731e-23 Identity = 45/49 (91.84%), Postives = 47/49 (95.92%), Query Frame = 3 Query: 123 DAGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMLTIDSRPIKLQIWDT 269
D GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+T+D RPIKLQIWDT
Sbjct: 14 DTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTVDGRPIKLQIWDT 62 HSP 4 Score: 60.8474 bits (146), Expect = 4.748e-9 Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 3 Query: 450 AGQESFRSITRSYYRGAAGALLVYDITR 533
AGQESFRSITRSYYRGAAGALLVYDITR
Sbjct: 63 AGQESFRSITRSYYRGAAGALLVYDITR 90
BLAST of rna-TanjilR_01596 vs. DB:Swiss
Match: RAB1C_ARATH (Ras-related protein RABB1c OS=Arabidopsis thaliana OX=3702 GN=RABB1C PE=1 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 1.900e-36 Identity = 62/71 (87.32%), Postives = 69/71 (97.18%), Query Frame = 3 Query: 1401 LTRRETFNHLASWLEDARQHANPNMTIILIGNKCDLSHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEE 1613
+TRRETFNHLASWLEDARQHAN NMTI+LIGNKCDL+HRRAVS EEGEQFAKE+GL+F+EASA+TAQNVEE
Sbjct: 88 ITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEE 158 HSP 2 Score: 104.375 bits (259), Expect = 4.644e-24 Identity = 45/49 (91.84%), Postives = 48/49 (97.96%), Query Frame = 3 Query: 123 DAGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMLTIDSRPIKLQIWDT 269
D GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TID++PIKLQIWDT
Sbjct: 14 DTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62 HSP 3 Score: 61.6178 bits (148), Expect = 2.092e-9 Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 3 Query: 450 AGQESFRSITRSYYRGAAGALLVYDITR 533
AGQESFRSITRSYYRGAAGALLVYDITR
Sbjct: 63 AGQESFRSITRSYYRGAAGALLVYDITR 90
BLAST of rna-TanjilR_01596 vs. DB:Swiss
Match: YPTC4_CHLRE (GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii OX=3055 GN=YPTC4 PE=3 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 4.560e-36 Identity = 63/75 (84.00%), Postives = 69/75 (92.00%), Query Frame = 3 Query: 1401 LTRRETFNHLASWLEDARQHANPNMTIILIGNKCDLSHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEVINN 1625
+TRRETFNHLASWLEDARQHANPNMTI+LIGNKCDL+HRRAV+ EEGEQFAKE+GL+FLE SARTA NVEE N
Sbjct: 88 ITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFIN 162 HSP 2 Score: 96.6709 bits (239), Expect = 2.491e-21 Identity = 43/49 (87.76%), Postives = 45/49 (91.84%), Query Frame = 3 Query: 123 DAGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMLTIDSRPIKLQIWDT 269
D GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+ ID + IKLQIWDT
Sbjct: 14 DTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDT 62 HSP 3 Score: 60.4622 bits (145), Expect = 5.334e-9 Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 3 Query: 450 AGQESFRSITRSYYRGAAGALLVYDITR 533
AGQESFRSITRSYYRGAAGALLVYDITR
Sbjct: 63 AGQESFRSITRSYYRGAAGALLVYDITR 90
BLAST of rna-TanjilR_01596 vs. DB:Swiss
Match: RAB2A_MAIZE (Ras-related protein Rab-2-A OS=Zea mays OX=4577 GN=RAB2A PE=2 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 1.069e-35 Identity = 62/71 (87.32%), Postives = 69/71 (97.18%), Query Frame = 3 Query: 1401 LTRRETFNHLASWLEDARQHANPNMTIILIGNKCDLSHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEE 1613
+TRRETFNHLASWLEDARQHAN NMTI+L+GNKCDLSHRRAVS EEGEQFAKE+GL+F+EASA+TAQNVEE
Sbjct: 88 ITRRETFNHLASWLEDARQHANANMTIMLVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEE 158 HSP 2 Score: 100.908 bits (250), Expect = 7.656e-23 Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = 3 Query: 123 DAGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMLTIDSRPIKLQIWDT 269
D GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+ ID++PIKLQIWDT
Sbjct: 14 DTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDNKPIKLQIWDT 62 HSP 3 Score: 58.5362 bits (140), Expect = 2.300e-8 Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 3 Query: 450 AGQESFRSITRSYYRGAAGALLVYDITR 533
AGQESFRSITRSYYRGAAGALLVYDITR
Sbjct: 63 AGQESFRSITRSYYRGAAGALLVYDITR 90
BLAST of rna-TanjilR_01596 vs. DB:Swiss
Match: RAB2B_MAIZE (Ras-related protein Rab-2-B OS=Zea mays OX=4577 GN=RAB2B PE=2 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 1.099e-35 Identity = 62/71 (87.32%), Postives = 69/71 (97.18%), Query Frame = 3 Query: 1401 LTRRETFNHLASWLEDARQHANPNMTIILIGNKCDLSHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEE 1613
+TRRETFNHLASWLEDARQHAN NMTI+L+GNKCDLSHRRAVS EEGEQFAKE+GL+F+EASA+TAQNVEE
Sbjct: 88 ITRRETFNHLASWLEDARQHANANMTIMLVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEE 158 HSP 2 Score: 102.834 bits (255), Expect = 1.721e-23 Identity = 45/49 (91.84%), Postives = 48/49 (97.96%), Query Frame = 3 Query: 123 DAGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMLTIDSRPIKLQIWDT 269
D GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TID++PIKLQIWDT
Sbjct: 14 DTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62 HSP 3 Score: 58.5362 bits (140), Expect = 2.425e-8 Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 3 Query: 450 AGQESFRSITRSYYRGAAGALLVYDITR 533
AGQESFRSITRSYYRGAAGALLVYDITR
Sbjct: 63 AGQESFRSITRSYYRGAAGALLVYDITR 90
BLAST of rna-TanjilR_01596 vs. DB:Swiss
Match: YPTV4_VOLCA (GTP-binding protein yptV4 OS=Volvox carteri OX=3067 GN=YPTV4 PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 1.128e-35 Identity = 63/75 (84.00%), Postives = 69/75 (92.00%), Query Frame = 3 Query: 1401 LTRRETFNHLASWLEDARQHANPNMTIILIGNKCDLSHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEVINN 1625
+TRRETFNHLASWLEDARQHANPNMTI+LIGNKCDL+HRRAV+ EEGEQFAKE+GL+FLE SARTA NVEE N
Sbjct: 88 ITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFIN 162 HSP 2 Score: 95.9005 bits (237), Expect = 4.780e-21 Identity = 43/49 (87.76%), Postives = 45/49 (91.84%), Query Frame = 3 Query: 123 DAGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMLTIDSRPIKLQIWDT 269
D GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+ ID + IKLQIWDT
Sbjct: 14 DTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDT 62 HSP 3 Score: 60.077 bits (144), Expect = 8.068e-9 Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 3 Query: 450 AGQESFRSITRSYYRGAAGALLVYDITR 533
AGQESFRSITRSYYRGAAGALLVYDITR
Sbjct: 63 AGQESFRSITRSYYRGAAGALLVYDITR 90
BLAST of rna-TanjilR_01596 vs. DB:Swiss
Match: RAB1A_ARATH (Ras-related protein RABB1a OS=Arabidopsis thaliana OX=3702 GN=RABB1A PE=2 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 6.083e-29 Identity = 54/71 (76.06%), Postives = 64/71 (90.14%), Query Frame = 3 Query: 1401 LTRRETFNHLASWLEDARQHANPNMTIILIGNKCDLSHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEE 1613
+TRRETFNHLASWLE+ARQHA+ NMT +LIGNKCDL +R VS EEGEQFA+E+GL+F+EASA+TA NVEE
Sbjct: 88 ITRRETFNHLASWLEEARQHASENMTTMLIGNKCDLEDKRTVSTEEGEQFAREHGLIFMEASAKTAHNVEE 158 HSP 2 Score: 91.2781 bits (225), Expect = 1.441e-19 Identity = 41/49 (83.67%), Postives = 46/49 (93.88%), Query Frame = 3 Query: 123 DAGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMLTIDSRPIKLQIWDT 269
D GVGKSCLLL+FTDKRFQ VHDLTIGVEFGA+ +TID++PIKLQIWDT
Sbjct: 14 DTGVGKSCLLLKFTDKRFQAVHDLTIGVEFGAKTITIDNKPIKLQIWDT 62 HSP 3 Score: 55.0694 bits (131), Expect = 4.174e-7 Identity = 25/28 (89.29%), Postives = 26/28 (92.86%), Query Frame = 3 Query: 450 AGQESFRSITRSYYRGAAGALLVYDITR 533
AGQESFRS+TRSYYRG AG LLVYDITR
Sbjct: 63 AGQESFRSVTRSYYRGRAGTLLVYDITR 90
BLAST of rna-TanjilR_01596 vs. DB:Swiss
Match: RAB2A_RAT (Ras-related protein Rab-2A OS=Rattus norvegicus OX=10116 GN=Rab2a PE=2 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 3.774e-27 Identity = 51/75 (68.00%), Postives = 61/75 (81.33%), Query Frame = 3 Query: 1401 LTRRETFNHLASWLEDARQHANPNMTIILIGNKCDLSHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEVINN 1625
+TRR+TFNHL +WLEDARQH+N NM I+LIGNK DL RR V KEEGE FA+E+GL+F+E SA+TA NVEE N
Sbjct: 88 ITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFIN 162 HSP 2 Score: 32.7278 bits (73), Expect = 3.774e-27 Identity = 13/27 (48.15%), Postives = 20/27 (74.07%), Query Frame = 1 Query: 1720 HIPQAFTQAAAKILQNIQEGVFDVSNE 1800
++ +AF A +I + IQEGVFD++NE
Sbjct: 155 NVEEAFINTAKEIYEKIQEGVFDINNE 181 HSP 3 Score: 99.3673 bits (246), Expect = 2.459e-22 Identity = 43/49 (87.76%), Postives = 46/49 (93.88%), Query Frame = 3 Query: 123 DAGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMLTIDSRPIKLQIWDT 269
D GVGKSCLLLQFTDKRFQPVHDLT+GVEFGARM+TID + IKLQIWDT
Sbjct: 14 DTGVGKSCLLLQFTDKRFQPVHDLTMGVEFGARMITIDGKQIKLQIWDT 62 HSP 4 Score: 58.151 bits (139), Expect = 3.924e-8 Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 3 Query: 450 AGQESFRSITRSYYRGAAGALLVYDITR 533
AGQESFRSITRSYYRGAAGALLVYDITR
Sbjct: 63 AGQESFRSITRSYYRGAAGALLVYDITR 90
BLAST of rna-TanjilR_01596 vs. DB:Swiss
Match: RAB2A_CHICK (Ras-related protein Rab-2A OS=Gallus gallus OX=9031 GN=RAB2A PE=2 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 3.900e-27 Identity = 51/75 (68.00%), Postives = 61/75 (81.33%), Query Frame = 3 Query: 1401 LTRRETFNHLASWLEDARQHANPNMTIILIGNKCDLSHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEVINN 1625
+TRR+TFNHL +WLEDARQH+N NM I+LIGNK DL RR V KEEGE FA+E+GL+F+E SA+TA NVEE N
Sbjct: 88 ITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFIN 162 HSP 2 Score: 32.7278 bits (73), Expect = 3.900e-27 Identity = 13/27 (48.15%), Postives = 20/27 (74.07%), Query Frame = 1 Query: 1720 HIPQAFTQAAAKILQNIQEGVFDVSNE 1800
++ +AF A +I + IQEGVFD++NE
Sbjct: 155 NVEEAFINTAKEIYEKIQEGVFDINNE 181 HSP 3 Score: 100.523 bits (249), Expect = 9.333e-23 Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 3 Query: 123 DAGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMLTIDSRPIKLQIWDT 269
D GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TID + IKLQIWDT
Sbjct: 14 DTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 62 HSP 4 Score: 58.9214 bits (141), Expect = 1.851e-8 Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 3 Query: 450 AGQESFRSITRSYYRGAAGALLVYDITR 533
AGQESFRSITRSYYRGAAGALLVYDITR
Sbjct: 63 AGQESFRSITRSYYRGAAGALLVYDITR 90
BLAST of rna-TanjilR_01596 vs. DB:Swiss
Match: RAB2A_PONAB (Ras-related protein Rab-2A OS=Pongo abelii OX=9601 GN=RAB2A PE=2 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 3.900e-27 Identity = 51/75 (68.00%), Postives = 61/75 (81.33%), Query Frame = 3 Query: 1401 LTRRETFNHLASWLEDARQHANPNMTIILIGNKCDLSHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEVINN 1625
+TRR+TFNHL +WLEDARQH+N NM I+LIGNK DL RR V KEEGE FA+E+GL+F+E SA+TA NVEE N
Sbjct: 88 ITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFIN 162 HSP 2 Score: 32.7278 bits (73), Expect = 3.900e-27 Identity = 13/27 (48.15%), Postives = 20/27 (74.07%), Query Frame = 1 Query: 1720 HIPQAFTQAAAKILQNIQEGVFDVSNE 1800
++ +AF A +I + IQEGVFD++NE
Sbjct: 155 NVEEAFINTAKEIYEKIQEGVFDINNE 181 HSP 3 Score: 100.523 bits (249), Expect = 9.333e-23 Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 3 Query: 123 DAGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMLTIDSRPIKLQIWDT 269
D GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TID + IKLQIWDT
Sbjct: 14 DTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 62 HSP 4 Score: 58.151 bits (139), Expect = 3.539e-8 Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 3 Query: 450 AGQESFRSITRSYYRGAAGALLVYDITR 533
AGQESFRSITRSYYRGAAGALLVYDITR
Sbjct: 63 AGQESFRSITRSYYRGAAGALLVYDITR 90 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_01596 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_01596_La_Tanjil_v1.0 ID=rna-TanjilR_01596_La_Tanjil_v1.0; Name=rna-TanjilR_01596; organism=Lupinus angustifolius; type=mRNA; length=2294bpback to top protein sequence of rna-TanjilR_01596_La_Tanjil_v1.0 >rna-TanjilR_01596_La_Tanjil_v1.0 ID=rna-TanjilR_01596_La_Tanjil_v1.0; Name=rna-TanjilR_01596_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=211bpback to top mRNA from alignment at Chr_LG20-CM007380.1:20585459..20587752- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_01596_La_Tanjil_v1.0 ID=rna-TanjilR_01596_La_Tanjil_v1.0; Name=rna-TanjilR_01596; organism=Lupinus angustifolius; type=mRNA; length=2294bp; location=Sequence derived from: Chr_LG20-CM007380.1:20585459..20587752- (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG20-CM007380.1:20585459..20587752- >rna-TanjilR_01596_La_Tanjil_v1.0 ID=rna-TanjilR_01596_La_Tanjil_v1.0; Name=rna-TanjilR_01596; organism=Lupinus angustifolius; type=CDS; length=636bp; location=Sequence derived from: Chr_LG20-CM007380.1:20585459..20587752- (Lupinus angustifoliusback to top |