rna-TanjilR_01564
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_01564 vs. DB:Swiss
Match: CLCB_ARATH (Chloride channel protein CLC-b OS=Arabidopsis thaliana OX=3702 GN=CLC-B PE=1 SV=1) HSP 1 Score: 538.495 bits (1386), Expect = 6.064e-173 Identity = 309/405 (76.30%), Postives = 353/405 (87.16%), Query Frame = 3 Query: 2619 RKGKMYKLLLSLAVSLFTSVCQYGLPFVGNCTPCDPSLPESVCPTNGRSGNYKQFNCPKGHYXXXXXXXXXXXXXXVKNIFSTNTPLEYQPTSIIIFFILYCILGLITFGIAVPSGLFLPIILMGSGYGRLLGIIMGPHTNIDHGLLAVLGAASLMAGSMRMTVSLCVIFXXXXXXXXXXXXXXXXXXXAKTVGDSFNPSIYEIILHLKGLPFMDANPEPWMRNLTVGDLVDVKPPVVTLSGVEKVSNIVDALKNTTHNGFPVMDERVVPPTGVASEATELHGLILRAHLIQVLKKKWFLKXXXXXXXXXXXXKFTWVELAEREGNIEEVAVTRDEMEMFVDLHPLTNTTPFTVLESMSVAKAMLLFRQVGLRHMLVVPKYQATGVSLLTTLSVMCNKYGQLSRQ 3833 KGK++K+LLSL VSLFTSVC YGLPF+ C PCDPS+ E +CPTNGRSGN+KQF+CPKG+YNDLATLLLTTNDDAV+N+FS+NTP E+ S+ IFF+LYCILGL TFGIA PSGLFLPIILMG+ YGR+LG MG +T+ID GL AVLGAA+LMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIY+IILHLKGLPF++ANPEPWMRNLTVG+L D KPPVVTL GVEKVSNIVD LKNTTHN FPV+DE VP G+A+ ATELHGLILRAHL++VLKK+WFL E+RRTEEWEVREKF W ELAERE N ++VA+T EMEM+VDLHPLTNTTP+TV+E+MSVAKA++LFRQVGLRH+L+VPK QA+G MC G L+RQ Sbjct: 363 EKGKIHKVLLSLTVSLFTSVCLYGLPFLAKCKPCDPSIDE-ICPTNGRSGNFKQFHCPKGYYNDLATLLLTTNDDAVRNLFSSNTPNEFGMGSLWIFFVLYCILGLFTFGIATPSGLFLPIILMGAAYGRMLGAAMGSYTSIDQGLYAVLGAAALMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYDIILHLKGLPFLEANPEPWMRNLTVGELGDAKPPVVTLQGVEKVSNIVDVLKNTTHNAFPVLDEAEVPQVGLATGATELHGLILRAHLVKVLKKRWFLTEKRRTEEWEVREKFPWDELAEREDNFDDVAITSAEMEMYVDLHPLTNTTPYTVMENMSVAKALVLFRQVGLRHLLIVPKIQASG---------MCPVVGILTRQ 757 HSP 2 Score: 278.1 bits (710), Expect = 9.556e-78 Identity = 142/166 (85.54%), Postives = 158/166 (95.18%), Query Frame = 2 Query: 1448 DLGKEGPLVHIGSCIASLLGQGGPDNYRIKWRWLRYFNNDRDRRDLITSGASSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVVLRAFIELCHEGKCGLFGAGGLIMFDVSNVSVSYNXXXXXXXXXXXXXXXLLGSLYNHLLHKVLRLYNLINQ 1945 DLGKEGPLVHIGSCIASLLGQGG DN+RIKWRWLRYFNNDRDRRDLIT G+++GVCAAFR+PVGGVLFALEEVATWWRSALLWRTFFSTAVVVVVLR FIE+C+ GKCGLFG GGLIMFDVS+V+ +Y+V +IPV++IGVIGG+LGSLYNHLLHKVLRLYNLIN+ Sbjct: 198 DLGKEGPLVHIGSCIASLLGQGGTDNHRIKWRWLRYFNNDRDRRDLITCGSAAGVCAAFRSPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVVLREFIEICNSGKCGLFGKGGLIMFDVSHVTYTYHVTDIIPVMLIGVIGGILGSLYNHLLHKVLRLYNLINE 363 HSP 3 Score: 87.4261 bits (215), Expect = 6.407e-16 Identity = 39/52 (75.00%), Postives = 46/52 (88.46%), Query Frame = 1 Query: 1 MGFNLVLTFIAAILCVCFAPTAAGPGIPEIKAYLNGVDTPNMYGANVLFVKV 156 +G NL LT +A++LCVCFAPTAAGPGIPEIKAYLNGVDTPNM+GA + VK+ Sbjct: 135 VGANLGLTLVASVLCVCFAPTAAGPGIPEIKAYLNGVDTPNMFGATTMIVKI 186
BLAST of rna-TanjilR_01564 vs. DB:Swiss
Match: CLCA_ARATH (Chloride channel protein CLC-a OS=Arabidopsis thaliana OX=3702 GN=CLC-A PE=1 SV=2) HSP 1 Score: 512.686 bits (1319), Expect = 3.391e-163 Identity = 297/387 (76.74%), Postives = 340/387 (87.86%), Query Frame = 3 Query: 2619 RKGKMYKLLLSLAVSLFTSVCQYGLPFVGNCTPCDPSLPESVCPTNGRSGNYKQFNCPKGHYXXXXXXXXXXXXXXVKNIFSTNTPLEYQPTSIIIFFILYCILGLITFGIAVPSGLFLPIILMGSGYGRLLGIIMGPHTNIDHGLLAVLGAASLMAGSMRMTVSLCVIFXXXXXXXXXXXXXXXXXXXAKTVGDSFNPSIYEIILHLKGLPFMDANPEPWMRNLTVGDLVDVKPPVVTLSGVEKVSNIVDALKNTTHNGFPVMDERVVPPTGVASEATELHGLILRAHLIQVLKKKWFLKXXXXXXXXXXXXKFTWVELAEREGNIEEVAVTRDEMEMFVDLHPLTNTTPFTVLESMSVAKAMLLFRQVGLRHMLVVPKYQATGVS 3779 +KGK++K+LLSL VSLFTSVC +GLPF+ C PCDPS+ E +CPTNGRSGN+KQFNCP G+YNDL+TLLLTTNDDAV+NIFS+NTP E+ S+ IFF LYCILGLITFGIA PSGLFLPIILMGS YGR+LG MG +TNID GL AVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITM VLLIAKTVGDSFN SIYEIILHLKGLPF++ANPEPWMRNLTVG+L D KPPVVTL+GVEKV+NIVD L+NTTHN FPV+D + TELHGLILRAHL++VLKK+WFL E+RRTEEWEVREKFT VELAERE N ++VA+T EM+++VDLHPLTNTTP+TV++SMSVAKA++LFR VGLRH+LVVPK QA+G+S Sbjct: 364 QKGKIHKVLLSLGVSLFTSVCLFGLPFLAECKPCDPSIDE-ICPTNGRSGNFKQFNCPNGYYNDLSTLLLTTNDDAVRNIFSSNTPNEFGMVSLWIFFGLYCILGLITFGIATPSGLFLPIILMGSAYGRMLGTAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMFVLLIAKTVGDSFNLSIYEIILHLKGLPFLEANPEPWMRNLTVGELNDAKPPVVTLNGVEKVANIVDVLRNTTHNAFPVLD------GADQNTGTELHGLILRAHLVKVLKKRWFLNEKRRTEEWEVREKFTPVELAEREDNFDDVAITSSEMQLYVDLHPLTNTTPYTVVQSMSVAKALVLFRSVGLRHLLVVPKIQASGMS 743 HSP 2 Score: 286.96 bits (733), Expect = 8.199e-81 Identity = 145/166 (87.35%), Postives = 157/166 (94.58%), Query Frame = 2 Query: 1448 DLGKEGPLVHIGSCIASLLGQGGPDNYRIKWRWLRYFNNDRDRRDLITSGASSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVVLRAFIELCHEGKCGLFGAGGLIMFDVSNVSVSYNXXXXXXXXXXXXXXXLLGSLYNHLLHKVLRLYNLINQ 1945 DLGKEGPLVHIGSCIASLLGQGGPDN+RIKWRWLRYFNNDRDRRDLIT G++SGVCAAFR+PVGGVLFALEEVATWWRSALLWRTFFSTAVVVVVLRAFIE+C+ GKCGLFG+GGLIMFDVS+V V Y+ +IPV +IGV GG+LGSLYNHLLHKVLRLYNLINQ Sbjct: 199 DLGKEGPLVHIGSCIASLLGQGGPDNHRIKWRWLRYFNNDRDRRDLITCGSASGVCAAFRSPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICNSGKCGLFGSGGLIMFDVSHVEVRYHAADIIPVTLIGVFGGILGSLYNHLLHKVLRLYNLINQ 364 HSP 3 Score: 75.485 bits (184), Expect = 2.780e-12 Identity = 35/51 (68.63%), Postives = 41/51 (80.39%), Query Frame = 1 Query: 4 GFNLVLTFIAAILCVCFAPTAAGPGIPEIKAYLNGVDTPNMYGANVLFVKV 156 G NL LT +A +L V FAPTAAGPGIPEIKAYLNG+DTPNM+G + VK+ Sbjct: 137 GANLGLTLVATVLVVYFAPTAAGPGIPEIKAYLNGIDTPNMFGFTTMMVKI 187
BLAST of rna-TanjilR_01564 vs. DB:Swiss
Match: CLCG_ARATH (Putative chloride channel-like protein CLC-g OS=Arabidopsis thaliana OX=3702 GN=CLC-G PE=1 SV=2) HSP 1 Score: 333.954 bits (855), Expect = 2.265e-97 Identity = 193/384 (50.26%), Postives = 275/384 (71.61%), Query Frame = 3 Query: 2619 RKGKMYKLLLSLAVSLFTSVCQYGLPFVGNCTPCDPSLPESVCPTNGRSGNYKQFNCPKGHYXXXXXXXXXXXXXXVKNIFSTNTPLEYQPTSIIIFFILYCILGLITFGIAVPSGLFLPIILMGSGYGRLLGIIMGPHTNIDHGLLAVLGAASLMAGSMRMTVSLCVIFXXXXXXXXXXXXXXXXXXXAKTVGDSFNPSIYEIILHLKGLPFMDANPEPWMRNLTVGDLVDVKPPVVTLSGVEKVSNIVDALKNTTHNGFPVMDERVVPPTGVASEATELHGLILRAHLIQVLKKKWFLKXXXXXXXXXXXXKFTWVELAE----REGNIEEVAVTRDEMEMFVDLHPLTNTTPFTVLESMSVAKAMLLFRQVGLRHMLVVPK 3758 KG +K+LL+ A+S+FTS +GLPF+ +C PC E CPT GRSGN+K++ CP GHYNDLA+L+ TNDDA+KN+FS NT E+ S+++FF+ L + ++GI P+GLF+P+I+ G+ YGR +G+++G ++N++HGL AVLGAAS + G+MRMTVS CVI LELTNNLLLLP+ M+VLLI+KTV D FN +IY +I+ LKG P++ ++ EP+MR L VGD+ V P+ +G+EKV IV LK T HNGFPV+D PP + A LHGLILRAH++ +LKK+ F+ + +F E A+ R IE+V ++ +E+ M++DLHP +N +P+TV+E+MS+AKA++LFR+VG+RH+LV+PK Sbjct: 348 EKGVTWKILLACAISIFTSCLLFGLPFLASCQPCPVDALEE-CPTIGRSGNFKKYQCPPGHYNDLASLIFNTNDDAIKNLFSKNTDFEFHYFSVLVFFVTCFFLSIFSYGIVAPAGLFVPVIVTGASYGRFVGMLLGSNSNLNHGLFAVLGAASFLGGTMRMTVSTCVILLELTNNLLLLPMMMVVLLISKTVADGFNANIYNLIMKLKGFPYLYSHAEPYMRQLLVGDV--VTGPLQVFNGIEKVETIVHVLKTTNHNGFPVVDG---PPL---AAAPVLHGLILRAHILTLLKKRVFMP-SPVACDSNTLSQFKAEEFAKKGSGRSDKIEDVELSEEELNMYLDLHPFSNASPYTVVETMSLAKALILFREVGIRHLLVIPK 721 HSP 2 Score: 217.624 bits (553), Expect = 1.515e-57 Identity = 110/165 (66.67%), Postives = 140/165 (84.85%), Query Frame = 2 Query: 1451 LGKEGPLVHIGSCIASLLGQGGPDNYRIKWRWLRYFNNDRDRRDLITSGASSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVVLRAFIELCHEGKCGLFGAGGLIMFDVSNVSVSYNXXXXXXXXXXXXXXXLLGSLYNHLLHKVLRLYNLINQ 1945 +GK GP+VH G+C+AS+LGQGG YR+ WRWLR+F NDRDRRDL+T GA++G+ A+FRAPVGGVLFALEE+++WWRSALLWR FFSTAVV +VLRA I++C GKCGLFG GGLIMFDV + + SY++ ++PV+++GV+GG+LGSLYN LL KVLR YN I + Sbjct: 184 IGKAGPMVHTGACVASILGQGGSKRYRLTWRWLRFFKNDRDRRDLVTCGAAAGIAASFRAPVGGVLFALEEMSSWWRSALLWRIFFSTAVVAIVLRALIDVCLSGKCGLFGKGGLIMFDVYSENASYHLGDVLPVLLLGVVGGILGSLYNFLLDKVLRAYNYIYE 348 HSP 3 Score: 57.7658 bits (138), Expect = 6.735e-7 Identity = 25/49 (51.02%), Postives = 34/49 (69.39%), Query Frame = 1 Query: 10 NLVLTFIAAILCVCFAPTAAGPGIPEIKAYLNGVDTPNMYGANVLFVKV 156 NL+LT A+++ AP AAG GIPE+KAYLNGVD P ++ L +K+ Sbjct: 123 NLILTLFASVITAFVAPAAAGSGIPEVKAYLNGVDAPEIFSLRTLIIKI 171
BLAST of rna-TanjilR_01564 vs. DB:Swiss
Match: CLCC_ARATH (Chloride channel protein CLC-c OS=Arabidopsis thaliana OX=3702 GN=CLC-C PE=1 SV=1) HSP 1 Score: 323.939 bits (829), Expect = 1.172e-93 Identity = 195/384 (50.78%), Postives = 276/384 (71.88%), Query Frame = 3 Query: 2619 RKGKMYKLLLSLAVSLFTSVCQYGLPFVGNCTPCDPSLPESVCPTNGRSGNYKQFNCPKGHYXXXXXXXXXXXXXXVKNIFSTNTPLEYQPTSIIIFFILYCILGLITFGIAVPSGLFLPIILMGSGYGRLLGIIMGPHTNIDHGLLAVLGAASLMAGSMRMTVSLCVIFXXXXXXXXXXXXXXXXXXXAKTVGDSFNPSIYEIILHLKGLPFMDANPEPWMRNLTVGDLVDVKPPVVTLSGVEKVSNIVDALKNTTHNGFPVMDERVVPPTGVASEATELHGLILRAHLIQVLKKKWFLKXX----XXXXXXXXXXKFTWVELAEREGNIEEVAVTRDEMEMFVDLHPLTNTTPFTVLESMSVAKAMLLFRQVGLRHMLVVPK 3758 KG +K++L +AVS+ +S C +GLP++ CTPC + E CP+ GRS YK F CP HYNDL++LLL TNDDA++N+F++ + E+ +++ IFF+ LG+IT+GIA+PSGLF+P+IL G+ YGRL+G ++GP + +D GL ++LGAAS + G+MRMTVSLCVI LELTNNLL+LP+ M+VLLI+KTV D FN +Y+ I+ +KGLP+M+ + EP+MRNL D+V +++ S VEKV I ALK T HNGFPV+DE PP +EA+EL G+ LR+HL+ +L+ K F K+R + F L + IE++ ++ +EMEM+VDLHP+TNT+P+TVLE++S+AKA +LFRQ+GLRH+ VVPK Sbjct: 373 EKGPRFKIMLVMAVSILSSCCAFGLPWLSQCTPCPIGIEEGKCPSVGRSSIYKSFQCPPNHYNDLSSLLLNTNDDAIRNLFTSRSENEFHISTLAIFFVAVYCLGIITYGIAIPSGLFIPVILAGASYGRLVGRLLGPVSQLDVGLFSLLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLVLLISKTVADCFNRGVYDQIVTMKGLPYMEDHAEPYMRNLVAKDVVS--GALISFSRVEKVGVIWQALKMTRHNGFPVIDE---PPF---TEASELCGIALRSHLLVLLQGKKFSKQRTTFGSQILRSCKARDFGKAGLG-KGLKIEDLDLSEEEMEMYVDLHPITNTSPYTVLETLSLAKAAILFRQLGLRHLCVVPK 747 HSP 2 Score: 209.534 bits (532), Expect = 8.662e-55 Identity = 113/165 (68.48%), Postives = 140/165 (84.85%), Query Frame = 2 Query: 1451 LGKEGPLVHIGSCIASLLGQGGPDNYRIKWRWLRYFNNDRDRRDLITSGASSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVVLRAFIELCHEGKCGLFGAGGLIMFDVSNVSVSYNXXXXXXXXXXXXXXXLLGSLYNHLLHKVLRLYNLINQ 1945 +GKEGP+VH G+CIA+LLGQGG YR+ W+WLR+F NDRDRRDLIT GA++GV AAFRAPVGGVLFALEE A+WWR+ALLWRTFF+TAVV VVLR+ IE C G+CGLFG GGLIMFDV++ V Y+ ++ +V +GVIGG+LGSLYN+L+ KVLR Y++IN+ Sbjct: 209 VGKEGPMVHTGACIANLLGQGGSKKYRLTWKWLRFFKNDRDRRDLITCGAAAGVAAAFRAPVGGVLFALEEAASWWRNALLWRTFFTTAVVAVVLRSLIEFCRSGRCGLFGKGGLIMFDVNSGPVLYSTPDLLAIVFLGVIGGVLGSLYNYLVDKVLRTYSIINE 373 HSP 3 Score: 57.7658 bits (138), Expect = 7.645e-7 Identity = 33/65 (50.77%), Postives = 40/65 (61.54%), Query Frame = 1 Query: 4 GFNLVLTFIAAILCVCFAPTAAGPGIPEIKAYLNGVDTPNMYGANVLFVKV--SFFLWLVGFYVA 192 G NL+L AA LC AP AAG GIPE+KAYLNG+D ++ + LFVK+ S F GF V Sbjct: 146 GCNLILATAAASLCAFIAPAAAGSGIPEVKAYLNGIDAYSILAPSTLFVKIFGSIFGVAAGFVVG 210
BLAST of rna-TanjilR_01564 vs. DB:Swiss
Match: CLCD_ARATH (Chloride channel protein CLC-d OS=Arabidopsis thaliana OX=3702 GN=CLC-D PE=1 SV=2) HSP 1 Score: 233.802 bits (595), Expect = 1.035e-62 Identity = 163/415 (39.28%), Postives = 250/415 (60.24%), Query Frame = 3 Query: 2619 RKGKMYKLLLSLAVSLFTSVCQYGLPFVGNCTPCDPSLPES--VCPTN-GRSGNYKQFNCP-KGHYXXXXXXXXXXXXXXVKNIFSTNTPLEYQPTSIIIFFILYCILGLITFGIAVPSGLFLPIILMGSGYGRLLGIIM---GPHTNIDHGLLAVLGAASLMAGSMRMTVSLCVIFXXXXXXXXXXXXXXXXXXXAKTVGDSFNPSIYEIILHLKGLPFMDANPEPWMRNLTVGDLVDVKPPVVTLSGVEKVSNIVDALKNTTHNGFPVMDERVVPPTGVASEATELHGLILRAHLIQVLKKKW-FLKXXXXXXXXXXXXKFTWVELAEREGN----IEEVAVTRDEMEMFVDLHPLTNTTPFTVLESMSVAKAMLLFRQVGLRHMLVVPKYQATGVSLLTTLSVMCNKYGQLS 3827 +KG K++ + +S TS +GLP + C+PC S+P+S CP G GNY F C YNDLAT+ T DDA++N+FS T E+ S++ F ++ L ++TFG AVP+G F+P I++GS YGRL+G+ + NI+ G A+LGAAS + GSMRMTVSLCVI +E+TNNL LLP+ M+VLLI+K VGD+FN +YE+ LKG+P +++ P+ MR + + + V++L V +V+++ L + HNGFPV+D S T + GL+LR+HL+ +L+ K F + + ++ E A+ + IE++ +T D++EM++DL P N +P+ V E MS+ K LFRQ+GLRH+ VVP+ + + L+T ++ + G+ S Sbjct: 354 KKGNRVKIIEACIISCITSAISFGLPLLRKCSPCPESVPDSGIECPRPPGMYGNYVNFFCKTDNEYNDLATIFFNTQDDAIRNLFSAKTMREFSAQSLLTFLAMFYTLAVVTFGTAVPAGQFVPGIMIGSTYGRLVGMFVVRFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKLLPLIMLVLLISKAVGDAFNEGLYEVQARLKGIPLLESRPKYHMRQMIAKEACQSQK-VISLPRVIRVADVASILGSNKHNGFPVIDH-------TRSGETLVIGLVLRSHLLVLLQSKVDFQHSPLPCDPSARNIRHSFSEFAKPVSSKGLCIEDIHLTSDDLEMYIDLAPFLNPSPYVVPEDMSLTKVYNLFRQLGLRHLFVVPR-PSRVIGLITRKDLLIEENGESS 759 HSP 2 Score: 133.265 bits (334), Expect = 3.271e-30 Identity = 92/152 (60.53%), Postives = 115/152 (75.66%), Query Frame = 2 Query: 1451 LGKEGPLVHIGSCIASLLGQGGPDNYRIKWRWLRYFNNDRDRRDLITSGASSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVVLRAFIELCHEGKCGLFGAGGLIMFDVSNVSVSYNXXXXXXXXXXXXXXXLLGSLYNHL 1906 LGKEGPLVH G+CIASLLGQGG Y + RW + F +DRDRRDL+T G ++GV AAFRAPVGGVLFALEEV +WWRS L+WR FF++A+V VV+R + C G CG FG GG I++DVS+ Y ++P+ +IGVIGGLLG+L+N L Sbjct: 189 LGKEGPLVHTGACIASLLGQGGSTKYHLNSRWPQLFKSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRTAMGWCKSGICGHFGGGGFIIWDVSDGQDDYYFKELLPMAVIGVIGGLLGALFNQL 340
BLAST of rna-TanjilR_01564 vs. DB:Swiss
Match: CLCB_DICDI (Chloride channel protein B OS=Dictyostelium discoideum OX=44689 GN=clcB PE=3 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 8.740e-41 Identity = 130/428 (30.37%), Postives = 225/428 (52.57%), Query Frame = 3 Query: 2613 YCRKGKMYKLLLSLAVSLFTSVCQYGLPFVGNCTPCD--PSLPESVC-PTNGRSGNYKQFNCPKGHYXXXXXXXXXXXXXXVKNIFSTNTPLEYQPTSIIIFFILYCILGLITFGIAVPSGLFLPIILMGSGYGRLLGIIMGPH-TNIDHGLLAVLGAASLMAGSMRMTVSLCVIFXXXXXXXXXXXXXXXXXXXAKTVGDSFNPSIYEIILHLKGLPFMDANPEPWMRNLTVGDLVDVKPPVVTLSGVEKVSNIVDALKNTTHNGFPVMDERVVPPTGVASEATELH------------------------------------GLILRAHLIQVLKKKWF-----LKXXXXXXXXXXXXKFTWVELAEREGN----IEEVA--VTRDEMEMFVDLHPLTNTTPFTVLESMSVAKAMLLFRQVGLRHM 3743 + K K+YK++ + + +SV + + +C P L C P + + QFNC +G+YN +ATL LTT +++++ +FS +T + + +++ F I Y +L +IT G+ V SG+F+P++L+GS +GRL+GI + + T+ID + A++GAAS+MAGS+RMT+SL VI +ELT L ++ +++ K GD FN SIYE ++ LK +P++++ P +R TV + + V TL + KV + L+ HNGFPV+ + +++ +L GLILR+ L +L++K F LK + E ++ + I E++ +T+++++M++DL P N ++ S+++A +FRQVGLRHM Sbjct: 372 FANKSKLYKMIEVCVIVILSSVVCFFPALLADCRPISGISGLTPGTCDPGDDSTLILNQFNCAEGYYNPMATLTLTTLENSLQIVFSRSTNI-FTAQTLLTFSIFYYVLTIITSGLYVASGIFIPMMLIGSSWGRLIGIFLSKYFTSIDPSIYALIGAASMMAGSLRMTISLVVIIVELTETTQYLLPVILSVMVGKWCGDIFNESIYEHLIELKHIPYLNSQPPNHLRKKTVAEAMSTD--VKTLPEIVKVKTALTILETCPHNGFPVVMLPQLHSNSNLNDSNQLSLSLNLNNNNNNNNNNNNNNNNNNNNNNNNNNNNILCGLILRSQLSVLLRRKIFNSPEDLKNIDFISDKGYNLPIDHTEFSQELASKIPPIHELSKLITKEDLDMYIDLRPYMNFAVVSIKNYSSLSEAYQIFRQVGLRHM 796 HSP 2 Score: 77.411 bits (189), Expect = 7.936e-13 Identity = 47/117 (40.17%), Postives = 66/117 (56.41%), Query Frame = 2 Query: 1451 LGKEGPLVHIGSCIASLLGQGGPDNYRIKWRWLRYFNNDRDRRDLITSGASSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVV----LRAFIELCHEGKCGLFGAG 1789 LG EGP+ HIG+ I S + Q + + F ND D+RD I+ GA++G+ AAF AP+GGVLF LEE +++W L WRTFFS + + L+ F + H+ FG Sbjct: 214 LGPEGPMFHIGAGIGSSMSQFKSKTLKFHLKSFWIFQNDSDKRDFISCGAAAGIAAAFGAPIGGVLFCLEEGSSFWSRQLTWRTFFSCLIATMTANLFLQGFTQQIHDYGVLTFGVS 330
BLAST of rna-TanjilR_01564 vs. DB:Swiss
Match: CLCN7_BOVIN (H(+)/Cl(-) exchange transporter 7 OS=Bos taurus OX=9913 GN=CLCN7 PE=2 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 1.269e-37 Identity = 116/342 (33.92%), Postives = 185/342 (54.09%), Query Frame = 3 Query: 2748 PTNGRSGNYK-QFNCPKGHYXXXXXXXXXXXXXXVKNIFSTNTPLEYQPTSIIIFFILYCILGLITFGIAVPSGLFLPIILMGSGYGRLLGI----IMGPHTNIDHGLLAVLGAASLMAGSMRMTVSLCVIFXXXXXXXXXXXXXXXXXXXAKTVGDSFNPSIYEIILHLKGLPFMDANPEPWMRNLTVGDLVDVKPPVVTLSGVEKVSNIVDALKNTT--HNGFPVMDERVVPPTGVASEATELHGLILRAHLIQVLKKKWFLKXXXXXXXXXXXXKFTWVELAEREGNIEEVAVTRDEMEMFVDLHPLTNTTPFTVLESMSVAKAMLLFRQVGLRHMLVV 3752 P G S +Y Q C G YN +A T + +V ++F + P Y P ++ +F ++Y L T+G+ V +G+F+P +L+G+ +GRL GI I G D G A++GAA+ + G +RMT+SL VI +E T+++ M+VL+ AK VGD F +Y++ + L+ +PF+ +LT +++ PV L EKV IVD L +T HNGFPV+++ ++ L GLILR+ LI +LK K F++ + + R I+ + V++DE E +DL N +P+TV + S+ + LFR +GLRH++VV Sbjct: 444 PLRGSSVSYPLQLFCADGEYNSMAVAFFNTPEKSVVSLFH-DPPGSYNPMTLGLFTLVYFFLACWTYGLTVSAGVFIPSLLIGAAWGRLFGISLSYITGAAVWADPGKYALMGAAAQLGGIVRMTLSLTVIMMEATSSVTYGFPIMLVLMTAKIVGDVFIEGLYDMHIQLQSVPFLHWEAPVTSHSLTAREVMST--PVTCLRRREKVGVIVDVLSSTASNHNGFPVVED------ADGTQPARLQGLILRSQLIVLLKHKVFVERSSMGLLRRRLRLKDFRDAYPRFPPIQSIHVSQDERECTMDLSEFMNPSPYTVPQEASLPRVFKLFRALGLRHLVVV 776 HSP 2 Score: 79.337 bits (194), Expect = 2.020e-13 Identity = 49/118 (41.53%), Postives = 74/118 (62.71%), Query Frame = 2 Query: 1451 LGKEGPLVHIGSCIASLLGQGGPDNYRIKWRWLRYFNNDRDRRDLITSGASSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVVLRAFIELCHEGKCGLFGAGGLIMF 1804 +GKEGP++H GS IA+ + QG + + ++ YF D ++RD +++GA++GV AAF APVGGVLF+LEE A++W L WR FF++ + L + + H G + GLI F Sbjct: 248 VGKEGPMIHSGSVIAAGISQGRSTSLKRDFKIFEYFRRDTEKRDFVSAGAAAGVSAAFGAPVGGVLFSLEEGASFWNQFLTWRIFFASMISTFTLNFVLSIYH-GNAWDLSSPGLINF 364
BLAST of rna-TanjilR_01564 vs. DB:Swiss
Match: CLCN7_RAT (H(+)/Cl(-) exchange transporter 7 OS=Rattus norvegicus OX=10116 GN=Clcn7 PE=2 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 3.785e-37 Identity = 122/365 (33.42%), Postives = 195/365 (53.42%), Query Frame = 3 Query: 2748 PTNGRSGNYK-QFNCPKGHYXXXXXXXXXXXXXXVKNIFSTNTPLEYQPTSIIIFFILYCILGLITFGIAVPSGLFLPIILMGSGYGRLLGIIM----GPHTNIDHGLLAVLGAASLMAGSMRMTVSLCVIFXXXXXXXXXXXXXXXXXXXAKTVGDSFNPSIYEIILHLKGLPFMDANPEPWMRNLTVGDLVDVKPPVVTLSGVEKVSNIVDALKNTT--HNGFPVMDERVVPPTGVASEATELHGLILRAHLIQVLKKKWFLKXXXXXXXXXXXXKFTWVELAEREGNIEEVAVTRDEMEMFVDLHPLTNTTPFTVLESMSVAKAMLLFRQVGLRHMLVVPKYQATGVSLLTTLSVMCNKYGQ 3821 P G S +Y Q C G YN +A T + +V ++F + P Y P ++ +F ++Y L T+G+ V +G+F+P +L+G+ +GRL GI M G D G A++GAA+ + G +RMT+SL VI +E T+N+ M+VL+ AK VGD F +Y++ + L+ +PF+ +LT +++ PV L EKV IVD L +T HNGFPV+++ G ++ L GLILR+ LI +LK K F++ + + R I+ + V++DE E +DL N +P+TV + S+ + LFR +GLRH++VV + V L+T + + G+ Sbjct: 438 PLQGSSMSYPLQLFCADGEYNSMAAAFFNTPEKSVVSLFH-DPPGSYNPMTLGLFTLVYFFLACWTYGLTVSAGVFIPSLLIGAAWGRLFGISMSYLTGAAIWADPGKYALMGAAAQLGGIVRMTLSLTVIMMEATSNVTYGFPIMLVLMTAKIVGDVFIEGLYDMHIQLQSVPFLHWEAPVTSHSLTAREVMST--PVTCLRRREKVGIIVDVLSDTASNHNGFPVVED-----VG-DTQPARLQGLILRSQLIVLLKHKVFVERSNMGLVQRRLRLKDFRDAYPRFPPIQSIHVSQDERECTMDLSEFMNPSPYTVPQEASLPRVFKLFRALGLRHLVVVDNHNQV-VGLVTRKDLARYRLGK 792 HSP 2 Score: 78.9518 bits (193), Expect = 2.226e-13 Identity = 49/118 (41.53%), Postives = 74/118 (62.71%), Query Frame = 2 Query: 1451 LGKEGPLVHIGSCIASLLGQGGPDNYRIKWRWLRYFNNDRDRRDLITSGASSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVVLRAFIELCHEGKCGLFGAGGLIMF 1804 +GKEGP++H GS IA+ + QG + + ++ YF D ++RD +++GA++GV AAF APVGGVLF+LEE A++W L WR FF++ + L + + H G + GLI F Sbjct: 242 VGKEGPMIHSGSVIAAGISQGRSTSLKRDFKIFEYFRRDTEKRDFVSAGAAAGVSAAFGAPVGGVLFSLEEGASFWNQFLTWRIFFASMISTFTLNFVLSIYH-GNMWDLSSPGLINF 358
BLAST of rna-TanjilR_01564 vs. DB:Swiss
Match: CLCN7_MOUSE (H(+)/Cl(-) exchange transporter 7 OS=Mus musculus OX=10090 GN=Clcn7 PE=1 SV=1) HSP 1 Score: 154.451 bits (389), Expect = 8.720e-37 Identity = 121/365 (33.15%), Postives = 195/365 (53.42%), Query Frame = 3 Query: 2748 PTNGRSGNYK-QFNCPKGHYXXXXXXXXXXXXXXVKNIFSTNTPLEYQPTSIIIFFILYCILGLITFGIAVPSGLFLPIILMGSGYGRLLGI----IMGPHTNIDHGLLAVLGAASLMAGSMRMTVSLCVIFXXXXXXXXXXXXXXXXXXXAKTVGDSFNPSIYEIILHLKGLPFMDANPEPWMRNLTVGDLVDVKPPVVTLSGVEKVSNIVDALKNTT--HNGFPVMDERVVPPTGVASEATELHGLILRAHLIQVLKKKWFLKXXXXXXXXXXXXKFTWVELAEREGNIEEVAVTRDEMEMFVDLHPLTNTTPFTVLESMSVAKAMLLFRQVGLRHMLVVPKYQATGVSLLTTLSVMCNKYGQ 3821 P G S +Y Q C G YN +A T + +V ++F + P Y P ++ +F ++Y L T+G+ V +G+F+P +L+G+ +GRL GI + G D G A++GAA+ + G +RMT+SL VI +E T+N+ M+VL+ AK VGD F +Y++ + L+ +PF+ +LT +++ PV L EKV IVD L +T HNGFPV+++ G ++ L GLILR+ LI +LK K F++ + + R I+ + V++DE E +DL N +P+TV + S+ + LFR +GLRH++VV + V L+T + + G+ Sbjct: 438 PLQGSSMSYPLQLFCADGEYNSMAAAFFNTPEKSVVSLFH-DPPGSYNPMTLGLFTLVYFFLACWTYGLTVSAGVFIPSLLIGAAWGRLFGISLSYLTGAAIWADPGKYALMGAAAQLGGIVRMTLSLTVIMMEATSNVTYGFPIMLVLMTAKIVGDVFIEGLYDMHIQLQSVPFLHWEAPVTSHSLTAREVMST--PVTCLRRREKVGIIVDVLSDTASNHNGFPVVED-----VG-DTQPARLQGLILRSQLIVLLKHKVFVERSNMGLVQRRLRLKDFRDAYPRFPPIQSIHVSQDERECTMDLSEFMNPSPYTVPQEASLPRVFKLFRALGLRHLVVVDNHNQV-VGLVTRKDLARYRLGK 792 HSP 2 Score: 78.9518 bits (193), Expect = 2.207e-13 Identity = 49/118 (41.53%), Postives = 74/118 (62.71%), Query Frame = 2 Query: 1451 LGKEGPLVHIGSCIASLLGQGGPDNYRIKWRWLRYFNNDRDRRDLITSGASSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVVLRAFIELCHEGKCGLFGAGGLIMF 1804 +GKEGP++H GS IA+ + QG + + ++ YF D ++RD +++GA++GV AAF APVGGVLF+LEE A++W L WR FF++ + L + + H G + GLI F Sbjct: 242 VGKEGPMIHSGSVIAAGISQGRSTSLKRDFKIFEYFRRDTEKRDFVSAGAAAGVSAAFGAPVGGVLFSLEEGASFWNQFLTWRIFFASMISTFTLNFVLSIYH-GNMWDLSSPGLINF 358
BLAST of rna-TanjilR_01564 vs. DB:Swiss
Match: CLCN7_HUMAN (H(+)/Cl(-) exchange transporter 7 OS=Homo sapiens OX=9606 GN=CLCN7 PE=1 SV=2) HSP 1 Score: 152.91 bits (385), Expect = 2.234e-36 Identity = 116/342 (33.92%), Postives = 184/342 (53.80%), Query Frame = 3 Query: 2748 PTNGRSGNYK-QFNCPKGHYXXXXXXXXXXXXXXVKNIFSTNTPLEYQPTSIIIFFILYCILGLITFGIAVPSGLFLPIILMGSGYGRLLGI----IMGPHTNIDHGLLAVLGAASLMAGSMRMTVSLCVIFXXXXXXXXXXXXXXXXXXXAKTVGDSFNPSIYEIILHLKGLPFMDANPEPWMRNLTVGDLVDVKPPVVTLSGVEKVSNIVDALKNTT--HNGFPVMDERVVPPTGVASEATELHGLILRAHLIQVLKKKWFLKXXXXXXXXXXXXKFTWVELAEREGNIEEVAVTRDEMEMFVDLHPLTNTTPFTVLESMSVAKAMLLFRQVGLRHMLVV 3752 P G S +Y Q C G YN +A T + +V ++F + P Y P ++ +F ++Y L T+G+ V +G+F+P +L+G+ +GRL GI + G D G A++GAA+ + G +RMT+SL VI +E T+N+ M+VL+ AK VGD F +Y++ + L+ +PF+ +LT +++ PV L EKV IVD L +T HNGFPV++ ++ L GLILR+ LI +LK K F++ + + R I+ + V++DE E +DL N +P+TV + S+ + LFR +GLRH++VV Sbjct: 440 PLQGGSMSYPLQLFCADGEYNSMAAAFFNTPEKSVVSLFH-DPPGSYNPLTLGLFTLVYFFLACWTYGLTVSAGVFIPSLLIGAAWGRLFGISLSYLTGAAIWADPGKYALMGAAAQLGGIVRMTLSLTVIMMEATSNVTYGFPIMLVLMTAKIVGDVFIEGLYDMHIQLQSVPFLHWEAPVTSHSLTAREVMST--PVTCLRRREKVGVIVDVLSDTASNHNGFPVVEH------ADDTQPARLQGLILRSQLIVLLKHKVFVERSNLGLVQRRLRLKDFRDAYPRFPPIQSIHVSQDERECTMDLSEFMNPSPYTVPQEASLPRVFKLFRALGLRHLVVV 772 HSP 2 Score: 78.9518 bits (193), Expect = 2.622e-13 Identity = 49/118 (41.53%), Postives = 74/118 (62.71%), Query Frame = 2 Query: 1451 LGKEGPLVHIGSCIASLLGQGGPDNYRIKWRWLRYFNNDRDRRDLITSGASSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVVLRAFIELCHEGKCGLFGAGGLIMF 1804 +GKEGP++H GS IA+ + QG + + ++ YF D ++RD +++GA++GV AAF APVGGVLF+LEE A++W L WR FF++ + L + + H G + GLI F Sbjct: 244 VGKEGPMIHSGSVIAAGISQGRSTSLKRDFKIFEYFRRDTEKRDFVSAGAAAGVSAAFGAPVGGVLFSLEEGASFWNQFLTWRIFFASMISTFTLNFVLSIYH-GNMWDLSSPGLINF 360 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_01564 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_01564_La_Tanjil_v1.0 ID=rna-TanjilR_01564_La_Tanjil_v1.0; Name=rna-TanjilR_01564; organism=Lupinus angustifolius; type=mRNA; length=4170bpback to top protein sequence of rna-TanjilR_01564_La_Tanjil_v1.0 >rna-TanjilR_01564_La_Tanjil_v1.0 ID=rna-TanjilR_01564_La_Tanjil_v1.0; Name=rna-TanjilR_01564_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=648bpback to top mRNA from alignment at Chr_LG20-CM007380.1:20871208..20875377- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_01564_La_Tanjil_v1.0 ID=rna-TanjilR_01564_La_Tanjil_v1.0; Name=rna-TanjilR_01564; organism=Lupinus angustifolius; type=mRNA; length=4170bp; location=Sequence derived from: Chr_LG20-CM007380.1:20871208..20875377- (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG20-CM007380.1:20871208..20875377- >rna-TanjilR_01564_La_Tanjil_v1.0 ID=rna-TanjilR_01564_La_Tanjil_v1.0; Name=rna-TanjilR_01564; organism=Lupinus angustifolius; type=CDS; length=1947bp; location=Sequence derived from: Chr_LG20-CM007380.1:20871208..20875377- (Lupinus angustifoliusback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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