rna-TanjilR_01563

Transcript Overview
Namerna-TanjilR_01563
Unique Namerna-TanjilR_01563_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length1750
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG20-CM007380.1supercontigChr_LG20-CM007380.1:20886041..20887790 -Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananR489Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR500Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiR0780Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR0784Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaR0667Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
anccR0833Cajanus cajan Asha genome v1.0Cajanus cajan
ancrR0811Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
anpsR0554Pisum sativum Cameor genome v1aPisum sativum
anpvR0758Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR0776Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anvuR0651Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR0664Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anasR0746Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR0799Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anzwsR0637Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anzwsR0649Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
antifR0658Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR0656Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
anvrvR0623Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvrvR0653Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvuaR0620Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvuaR0632Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvssR0732Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR0756Vicia sativa cv. Studenica genome v1.0Vicia sativa
anavjR0698Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0749Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0757Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
ancarR0651Cicer arietinum
anccaR0682Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR0688Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR0762Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR0777Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR0784Vigna umbellata FF25 genome v1.0Vigna umbellata
anvvaR0721Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvstR0744Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0755Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0761Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0770Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0766Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0778Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvunR0624Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anvunR0632Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anpvfR0787Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anpvfR0793Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anpvfR0811Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris

Orthologs
Gene/TranscriptAssemblySpecies
Vigun01g068500.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Va10G052660.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
evm.model.Chr04.706Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vigun01g068500.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
jg5282.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Psat03G0535700-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Phvul.004G054500.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vigst.11G040900.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
LR48_mrnaVigan10g215200Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vum_04G01593.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Vum_11G00512.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Vigan.04G227400.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
PvulFLAVERTChr04.312Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Cc_v2.0_15698.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Va03G056790.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
rna-XM_022777667.1Vigna radiata cv. VC1973A genome v6.0Vigna radiata
PvulFLAVERTChr01.623Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
rna-XM_014650139.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
evm.model.Chr01.680Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Phvul.001G094500.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vigun04g081100.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Cc_v2.0_18605.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Vigun04g081100.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vigst.04G141100.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Vigan.11G078900.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_01563gene-TanjilG_01563_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_01563rna-TanjilR_01563_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_01563_La_Tanjil_v1.0rna-TanjilR_01563_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_01563_La_Tanjil_v1.0-CDS-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20887411..20887790rna-TanjilR_01563_La_Tanjil_v1.0-CDS-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20887411..20887790Lupinus angustifoliusCDS
rna-TanjilR_01563_La_Tanjil_v1.0-CDS-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20886041..20886152rna-TanjilR_01563_La_Tanjil_v1.0-CDS-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20886041..20886152Lupinus angustifoliusCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_01563_La_Tanjil_v1.0-exon-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20887411..20887790rna-TanjilR_01563_La_Tanjil_v1.0-exon-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20887411..20887790Lupinus angustifoliusexon
rna-TanjilR_01563_La_Tanjil_v1.0-exon-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20886041..20886152rna-TanjilR_01563_La_Tanjil_v1.0-exon-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20886041..20886152Lupinus angustifoliusexon


Homology
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BLAST of rna-TanjilR_01563 vs. DB:Swiss
Match: RR21_SPIOL (30S ribosomal protein S21, chloroplastic OS=Spinacia oleracea OX=3562 GN=rps21 PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 6.722e-24
Identity = 46/61 (75.41%), Postives = 55/61 (90.16%), Query Frame = 1 
Query:  151 VMNPSLAYSNMMLFKSAYNVQVVVGDDETEERLLNRFRREVMKAGVIQECKRRRYYENKHD 333
            V+ PSLA+SN + F+SAYNVQV+V D+E EERLLNRFRREVM+AGVIQECKRRRY+ENK +
Sbjct:   67 VVCPSLAFSNTLYFRSAYNVQVLVDDNENEERLLNRFRREVMRAGVIQECKRRRYFENKQE 127
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_01563 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
RR21_SPIOL6.722e-2475.4130S ribosomal protein S21, chloroplastic OS=Spinac... [more]
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InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001911Ribosomal protein S21PRINTSPR00976RIBOSOMALS21coord: 93..103
score: 45.45
coord: 105..115
score: 35.61
coord: 81..90
score: 43.33
IPR001911Ribosomal protein S21PFAMPF01165Ribosomal_S21coord: 71..125
e-value: 6.6E-20
score: 70.6
IPR001911Ribosomal protein S21TIGRFAMTIGR00030TIGR00030coord: 70..126
e-value: 6.5E-14
score: 49.5
IPR001911Ribosomal protein S21HAMAPMF_00358Ribosomal_S21coord: 69..125
score: 14.419
IPR038380Ribosomal protein S21 superfamilyGENE3D1.20.5.1150coord: 84..122
e-value: 8.2E-7
score: 30.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 108..163
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 108..129

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_01563_La_Tanjil_v1.0 ID=rna-TanjilR_01563_La_Tanjil_v1.0; Name=rna-TanjilR_01563; organism=Lupinus angustifolius; type=mRNA; length=1750bp
ATGGCTTCTTCATCAACCTTCTCCAACCTTCTCTCTCTCATCATACCCAC
AAAACAACCCTCTATTCCACCACCACCCAACAATCTCAATTTCCCTTTTT
CATCAACCCCATTTCAAAAAATCTCTTCTTTATCTCATCACTCATCCTCT
GTGATGAATCCCTCACTTGCGTATTCGAACATGATGTTGTTTAAATCAGC
GTATAATGTTCAGGTTGTGGTGGGAGATGATGAAACTGAAGAGAGGTTGT
TGAATAGGTTCAGGAGAGAAGTTATGAAAGCTGGTGTTATACAAGAGTGT
AAGAGGAGAAGGTACTATGAGAATAAGCATGATAAGAAGAAGCGTAAGGC
TCGTGAAGCTTCTAGACGTAATCGCAAATGGTGAATAATTAATTCGTTTT
TTTGTTAAGCTTTCTTCATTAAATGGATTAATGTTTTGGATAAATTGTTG
TGATTGTTATTCATGTTGTATGGATTTTGATTGCAAGGTTTTAAATAGCT
ATCACGATGTCGAGAAGTAAGTCTCACATCGTTGTCTCGGGAATGGTTGT
TTAAATATTTGTTGGACTATTCTCTGGTCAATTGGTGTTGAGATGGAACC
TTAACTAAAACTCTCGATACCTTTATGTATCGGATAAATGTGGCTGATTG
CAGTTATAATTGATGACTCCCAAAACCTTAATGTCTGTAATGATCCTGGG
TGTAGATTTAAAACCTTGTTTGAGAGTGCAAGTCATATGTGAGGTTTGTT
GTGTTATTGTTTAGTTGACAGGTTTTAAATTGCGGTTCGTAACAGCCTGG
GGTGCAATATTGTGGTCTTTGTAGTCTTTGACCAGCTTCAGTTAGTTTGG
CCTTATTGGCGTCGAAGCTGTTAAGTTAGTTAATTAGTTAGGATGTTATA
AGTGGAGACAGAGAATATTAAGGCTAGTGTGTTGTGGATACTGGATACTT
TCAAATTCGTATAGTCGAGAGGAAGAGAGTTCTGAAATCATAGTGTTATT
ATTAATAAATACCACCATATTTCTCGGTTATTCTGGTCCATTTCTATCAA
CCGCAGTTGCAAGCGATAAACTCAAAGTAACCTCAACCAGATTTTGAAAC
CATGTTAAATGGTTGAGTATGAGTTGGTTATTGAAAATGGACAGCATTTA
TGGGATCATGTGCAAAACTGCAAGGTTGGAATTTTTAGGAGAGTATAAGA
TGGAATGGAAGTGATAACTGCAGTTGCGTAATCTTGTTTGTAATAGGAGG
AATAATGAAATTTTCTTCTCCACATCCACGGTTTGGTCAATGATTTTTGT
TTCACTACATGTTAGGTGCTTTTTTGAAATTCAGTAATTATTAATTTCAT
CTAATGTCAAGTCTATGCATAAACTAGAAAGTTAGGGATTTGATTGGGTG
AAATGGTTACGGGGCTAAGCTGTTCATTCTCAATGTTGTTATGGAGCTTT
GCGCTGTCTAATTTTCGTGTGGTTGGGTTTATGTTGTGAAATTCTTCTGC
TATTTATTCGCATGTCAAGTGAAACTTCTACTCAATGACTTACAAGATTT
TCGTATGTGTCGATGGAAGTAGAGATGGGCATGCTCTTATTAGTTAGATA
ATTCCATTAACATTGATTATTTGATACGTCATTTGTAGGCGCCCTTTTCA
AAGAACTGCGGTGCCAAACAAGGATGGTTTCCCAACTAAGAAGGGAGATG
ATGACGACGACGATAACTGGGATCTACCTGAAGGAGACACTGCGATTTAA
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protein sequence of rna-TanjilR_01563_La_Tanjil_v1.0

>rna-TanjilR_01563_La_Tanjil_v1.0 ID=rna-TanjilR_01563_La_Tanjil_v1.0; Name=rna-TanjilR_01563_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=163bp
MASSSTFSNLLSLIIPTKQPSIPPPPNNLNFPFSSTPFQKISSLSHHSSS
VMNPSLAYSNMMLFKSAYNVQVVVGDDETEERLLNRFRREVMKAGVIQEC
KRRRYYENKHDKKKRKAREASRRNRKWRPFQRTAVPNKDGFPTKKGDDDD
DDNWDLPEGDTAI
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mRNA from alignment at Chr_LG20-CM007380.1:20886041..20887790-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_01563_La_Tanjil_v1.0 ID=rna-TanjilR_01563_La_Tanjil_v1.0; Name=rna-TanjilR_01563; organism=Lupinus angustifolius; type=mRNA; length=1750bp; location=Sequence derived from: Chr_LG20-CM007380.1:20886041..20887790- (Lupinus angustifolius
ATGGCTTCTTCATCAACCTTCTCCAACCTTCTCTCTCTCATCATACCCAC
AAAACAACCCTCTATTCCACCACCACCCAACAATCTCAATTTCCCTTTTT
CATCAACCCCATTTCAAAAAATCTCTTCTTTATCTCATCACTCATCCTCT
GTGATGAATCCCTCACTTGCGTATTCGAACATGATGTTGTTTAAATCAGC
GTATAATGTTCAGGTTGTGGTGGGAGATGATGAAACTGAAGAGAGGTTGT
TGAATAGGTTCAGGAGAGAAGTTATGAAAGCTGGTGTTATACAAGAGTGT
AAGAGGAGAAGGTACTATGAGAATAAGCATGATAAGAAGAAGCGTAAGGC
TCGTGAAGCTTCTAGACGTAATCGCAAATGGTGAATAATTAATTCGTTTT
TTTGTTAAGCTTTCTTCATTAAATGGATTAATGTTTTGGATAAATTGTTG
TGATTGTTATTCATGTTGTATGGATTTTGATTGCAAGGTTTTAAATAGCT
ATCACGATGTCGAGAAGTAAGTCTCACATCGTTGTCTCGGGAATGGTTGT
TTAAATATTTGTTGGACTATTCTCTGGTCAATTGGTGTTGAGATGGAACC
TTAACTAAAACTCTCGATACCTTTATGTATCGGATAAATGTGGCTGATTG
CAGTTATAATTGATGACTCCCAAAACCTTAATGTCTGTAATGATCCTGGG
TGTAGATTTAAAACCTTGTTTGAGAGTGCAAGTCATATGTGAGGTTTGTT
GTGTTATTGTTTAGTTGACAGGTTTTAAATTGCGGTTCGTAACAGCCTGG
GGTGCAATATTGTGGTCTTTGTAGTCTTTGACCAGCTTCAGTTAGTTTGG
CCTTATTGGCGTCGAAGCTGTTAAGTTAGTTAATTAGTTAGGATGTTATA
AGTGGAGACAGAGAATATTAAGGCTAGTGTGTTGTGGATACTGGATACTT
TCAAATTCGTATAGTCGAGAGGAAGAGAGTTCTGAAATCATAGTGTTATT
ATTAATAAATACCACCATATTTCTCGGTTATTCTGGTCCATTTCTATCAA
CCGCAGTTGCAAGCGATAAACTCAAAGTAACCTCAACCAGATTTTGAAAC
CATGTTAAATGGTTGAGTATGAGTTGGTTATTGAAAATGGACAGCATTTA
TGGGATCATGTGCAAAACTGCAAGGTTGGAATTTTTAGGAGAGTATAAGA
TGGAATGGAAGTGATAACTGCAGTTGCGTAATCTTGTTTGTAATAGGAGG
AATAATGAAATTTTCTTCTCCACATCCACGGTTTGGTCAATGATTTTTGT
TTCACTACATGTTAGGTGCTTTTTTGAAATTCAGTAATTATTAATTTCAT
CTAATGTCAAGTCTATGCATAAACTAGAAAGTTAGGGATTTGATTGGGTG
AAATGGTTACGGGGCTAAGCTGTTCATTCTCAATGTTGTTATGGAGCTTT
GCGCTGTCTAATTTTCGTGTGGTTGGGTTTATGTTGTGAAATTCTTCTGC
TATTTATTCGCATGTCAAGTGAAACTTCTACTCAATGACTTACAAGATTT
TCGTATGTGTCGATGGAAGTAGAGATGGGCATGCTCTTATTAGTTAGATA
ATTCCATTAACATTGATTATTTGATACGTCATTTGTAGGCGCCCTTTTCA
AAGAACTGCGGTGCCAAACAAGGATGGTTTCCCAACTAAGAAGGGAGATG
ATGACGACGACGATAACTGGGATCTACCTGAAGGAGACACTGCGATTTAA
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Coding sequence (CDS) from alignment at Chr_LG20-CM007380.1:20886041..20887790-

>rna-TanjilR_01563_La_Tanjil_v1.0 ID=rna-TanjilR_01563_La_Tanjil_v1.0; Name=rna-TanjilR_01563; organism=Lupinus angustifolius; type=CDS; length=492bp; location=Sequence derived from: Chr_LG20-CM007380.1:20886041..20887790- (Lupinus angustifolius
ATGGCTTCTTCATCAACCTTCTCCAACCTTCTCTCTCTCATCATACCCAC
AAAACAACCCTCTATTCCACCACCACCCAACAATCTCAATTTCCCTTTTT
CATCAACCCCATTTCAAAAAATCTCTTCTTTATCTCATCACTCATCCTCT
GTGATGAATCCCTCACTTGCGTATTCGAACATGATGTTGTTTAAATCAGC
GTATAATGTTCAGGTTGTGGTGGGAGATGATGAAACTGAAGAGAGGTTGT
TGAATAGGTTCAGGAGAGAAGTTATGAAAGCTGGTGTTATACAAGAGTGT
AAGAGGAGAAGGTACTATGAGAATAAGCATGATAAGAAGAAGCGTAAGGC
TCGTGAAGCTTCTAGACGTAATCGCAAATGGCGCCCTTTTCAAAGAACTG
CGGTGCCAAACAAGGATGGTTTCCCAACTAAGAAGGGAGATGATGACGAC
GACGATAACTGGGATCTACCTGAAGGAGACACTGCGATTTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR001911Ribosomal_bS21
IPR038380Ribosomal_bS21_sf
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome