rna-TanjilR_06960
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_06960 vs. DB:Swiss
Match: CHIC_ARATH (Class V chitinase OS=Arabidopsis thaliana OX=3702 GN=ChiC PE=1 SV=1) HSP 1 Score: 177.948 bits (450), Expect = 5.016e-49 Identity = 112/242 (46.28%), Postives = 151/242 (62.40%), Query Frame = 3 Query: 852 QVARNNNFHGLDLDWEYPSTGTDKTNLGLLVKEWRAAITQESKTSGKPALLLSAAVAGSDQITSLQNYPGQELANNLDFLNVMTYDLFTSDGYPMVTQPPAPLKNPGGQF-SVDEGITKWINQXXXXXXXXXXXXXFYGFKWLLSDPIKHXXXXXXXXXXX----XVKYKDIK----NAGGQVVYNSTYFTNYSYKGTDWYGYDDTQSVSAKVDYAKGKGLFGYFAWHIEQDSNWALSQAGE 1550 +VAR+ FHGLDLDWEYPS+ T+ TN G L++EWR+A+ E+ +SGKP LLL+AAV S+ S+ YP +A++LD++N+M YD F G+ VT PPA L +P S D G WI Q GLP KK LG P+YG+ W L++ H+ +A + A ++ Y I+ + G VYNST +Y Y GT+W GYDD QS+ KV YAK +GL GYF+WH+ D N LS+A Sbjct: 125 RVARSYGFHGLDLDWEYPSSATEMTNFGTLLREWRSAVVAEASSSGKPRLLLAAAVFYSNNYYSVL-YPVSAVASSLDWVNLMAYD-FYGPGWSRVTGPPAALFDPSNAGPSGDAGTRSWI-QAGLPAKKAVLGFPYYGYAWRLTNANSHSYYAPTTGAAISPDGSIGYGQIRKFIVDNGATTVYNSTVVGDYCYAGTNWIGYDDNQSIVTKVRYAKQRGLLGYFSWHVGADDNSGLSRAAS 363 HSP 2 Score: 105.145 bits (261), Expect = 3.772e-23 Identity = 66/136 (48.53%), Postives = 91/136 (66.91%), Query Frame = 3 Query: 291 MAESKSLSLLF---FTMLVGFSSAQTAIKGGYWYSESGLKVSDIDASHFTHLFCAFAIL--ENNKVXXXXXXXXXXXTFTQTLLQKKSSIKTLLSIGGGKGPSLAKSFSDMASQASTRKSFIDSSIQVLALCYNIH 683 M+ +K +SL+ F + + S AQT +K YW+ S V+DID+S FTHLFCAFA L + N+V++SS++ FSTFTQT+ ++ S+KTLLSIGGG A ++ MAS ++RKSFIDSSI+V A Y H Sbjct: 1 MSSTKLISLIVSITFFLTLQCSMAQTVVKASYWFPASEFPVTDIDSSLFTHLFCAFADLNSQTNQVTVSSANQPKFSTFTQTVQRRNPSVKTLLSIGGGIADKTA--YASMASNPTSRKSFIDSSIRV-ARSYGFH 133
BLAST of rna-TanjilR_06960 vs. DB:Swiss
Match: CHIT5_LOTJA (Class V chitinase CHIT5 OS=Lotus japonicus OX=34305 GN=CHIT5 PE=1 SV=2) HSP 1 Score: 130.183 bits (326), Expect = 1.156e-31 Identity = 89/242 (36.78%), Postives = 127/242 (52.48%), Query Frame = 3 Query: 852 QVARNNNFHGLDLDWEYPSTGTDKTNLGLLVKEWRAAITQESKTSGKPALLLSAAVAGSDQITSLQN----YPGQELANNLDFLNVMTYDLFTSDGYPMVTQPPAPLKNPGGQFSVDEGITKWINQXXXXXXXXXXXXXFYGFKWLLSDPIKHXXXXXXXXXXX----XVKYKDI----KNAGGQVVYNSTYFTNYSYKGTDWYGYDDTQSVSAKVDYAKGKGLFGYFAWHIEQDSNWALSQ 1541 VAR + F+GLDLDWE+P D +NL LL+KEW A+ E+ TS K LLL++AV + I+ + N YP + + LD+ + M +D + + T A L +P S GI WI K + YG W L DP H + A+A A ++ Y +I K+ G +VVY+ + YSY GT W GYDD S++ KV +A+ GL GYF W I +D +W +S+ Sbjct: 151 HVARKHEFNGLDLDWEWPGDEKDMSNLALLLKEWYKALVVEANTSRKSRLLLTSAVYFNSTISLIGNGPRSYPVRAIRKYLDWASPMCFDY--NGAWANETGFNAALYDPNSNISTKYGIGSWIGSGVPAEKLVMGLP-LYGRAWELKDPNDHGVGAKAVGPAVDTDGSMDYDEILVFNKDTGAKVVYDEVAVSFYSYSGTTWIGYDDGPSITKKVQFARSMGLKGYFFWAIGKDKDWTISK 389
BLAST of rna-TanjilR_06960 vs. DB:Swiss
Match: CHT5A_MEDTR (Class V chitinase CHIT5a OS=Medicago truncatula OX=3880 GN=CHIT5A PE=1 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 1.224e-29 Identity = 89/243 (36.63%), Postives = 133/243 (54.73%), Query Frame = 3 Query: 852 QVARNNNFHGLDLDWEYPSTGTDKTNLGLLVKEWRAAITQESKTSGKPALLLSAAVAGSDQITSL-----QNYPGQELANNLDFLNVMTYDLFTSDGYPMVTQPPAPLKNPGGQFSVDEGITKWINQXXXXXXXXXXXXXFYGFKWLLSDP----IKHXXXXXXXXXXXXVKYKDI----KNAGGQVVYNSTYFTNYSYKGTDWYGYDDTQSVSAKVDYAKGKGLFGYFAWHIEQDSNWALSQ 1541 +VAR F G+DLDWE+P T D NLGLL +EW A+ E+K KP LLL++AV + + + ++YP Q + LD+ + M +D + + T A L + + S + G+ WI + G+ P+KL +GL YG W L DP + A+ G++ Y +I K +G VVY+ + YSY GT W GYDD S++ KV +AK GL GYF W + +D +W++S+ Sbjct: 137 EVARKYRFDGVDLDWEFPETQQDMFNLGLLYEEWYNALFAEAKVRRKPRLLLTSAVYYNSTVRLIGKHGPRSYPTQAINKYLDWASPMCFDYHGT--WDNNTDFNAALYDSKSEISTNFGLHSWI-KSGVRPEKLVMGLALYGRAWELKDPNVNGVGAEAVGPATDTDGSMNYNEILKFNKQSGANVVYDKVAISFYSYAGTTWIGYDDGPSITTKVRFAKSLGLKGYFFWALGKDKDWSISK 376
BLAST of rna-TanjilR_06960 vs. DB:Swiss
Match: NFH1_MEDTR (Nod factor hydrolase protein 1 OS=Medicago truncatula OX=3880 GN=NFH1 PE=1 SV=2) HSP 1 Score: 121.324 bits (303), Expect = 1.045e-28 Identity = 90/246 (36.59%), Postives = 132/246 (53.66%), Query Frame = 3 Query: 852 QVARNNNFHGLDLDWEYPSTGTDKTNLGLLVKEWRAAITQESKTSGKPALLLSAAVAGSDQIT---SLQNYPGQELANNLDFLNVMTYDLFTSDGYPMVTQPPAPLKNPGGQFSVDEGITKWINQXXXXXXXXXXXXXFYGFKWLLSDPIKHXX----XXXXXXXXXXVKYKDI----KNAGGQVVYNSTYFTNYSYKGTDWYGYDDTQSVSAKVDYAKGKGLFGYFAWHIEQD-SNWALSQAGEC 1553 QVAR F G+D DWE+P+T + +LG L+ +WR AI+ E+ ++ +P LLL+AAV + + YP + NLD++NVM+YDL S VT P+ + + SV G+ WI + G+ P+K+ +G+P YG W L DP H + G + Y + K G +VVY+ + YSY G+ W GYDD +VS KV +A+ L GYF W D S+W +S A + Sbjct: 138 QVARTFGFDGIDFDWEFPTTTKEMNDLGELLFQWRRAISDETASTSRPPLLLTAAVYFAVNFFLSGERRMYPVDSINKNLDWVNVMSYDLRGSGS--NVTGAPSGMFDSKSNVSVVSGLFSWI-RGGVAPEKIVMGMPLYGKSWKLQDPNVHGIGAPNVGPGPGVDGGMAYFQVVDFNKQMGAKVVYDKETGSVYSYSGSTWIGYDDPFTVSVKVGFAQALKLGGYFFWAAGYDTSDWKVSTASKA 380
BLAST of rna-TanjilR_06960 vs. DB:Swiss
Match: CHT5B_MEDTR (Class V chitinase CHIT5b OS=Medicago truncatula OX=3880 GN=CHIT5B PE=1 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 7.719e-24 Identity = 83/240 (34.58%), Postives = 126/240 (52.50%), Query Frame = 3 Query: 855 VARNNNFHGLDLDWEYPSTGTDKTNLGLLVKEWRAAITQESKTSGKPALLLSAAVAGSDQIT---SLQNYPGQELANNLDFLNVMTYDLFTSDGYPMVTQPPAPLKNPGGQFSVDEGITKWINQXXXXXXXXXXXXXFYGFKWLLSDPIKHXXXXXXXXXXXXVK----YKDI----KNAGGQVVYNSTYFTNYSYKGTDWYGYDDTQSVSAKVDYAKGKGLFGYFAWHIEQDS-NWALS 1538 VAR F G+DLDWE+P + +LG ++ +WR AI+ E T+G+P LLL+AAV + + + YP + NLD++NVM+Y+L T P+ +P SV G+ WI+ G+ P+KL +G+P YG W L DP H + A + V Y + + +V Y+ + YSY G+ W GYD+ +VS KV +A+ L GYF W D+ +W ++ Sbjct: 133 VARTFGFDGIDLDWEFPKNTKEMNDLGEMLFQWRKAISDEGATTGRPPLLLTAAVYFAVNFSIYGEPRMYPVNSINENLDWVNVMSYELRGPRSNK--TGAPSGTFDPKSNVSVVSGLLSWIHS-GVVPEKLVMGMPLYGKSWKLRDPNVHGIGAPSVGSGPGVNGLMAYFQVLDFNRQKSAKVEYDVDTASVYSYSGSTWIGYDNPFTVSIKVGFAQALKLRGYFFWVAGLDTLDWKIA 369
BLAST of rna-TanjilR_06960 vs. DB:Swiss
Match: CHIL3_MOUSE (Chitinase-like protein 3 OS=Mus musculus OX=10090 GN=Chil3 PE=1 SV=2) HSP 1 Score: 91.6633 bits (226), Expect = 1.571e-18 Identity = 82/244 (33.61%), Postives = 113/244 (46.31%), Query Frame = 3 Query: 861 RNNNFHGLDLDWEYP----STGTDKTNLGLLVKEWRAAITQESKTSGKPALLLSAAVAGS-DQITSLQNYPGQELANNLDFLNVMTYDLF-TSDGYPMVTQPPAPL-KNP-----GGQFSVDEGITKWINQXXXXXXXXXXXXXFYGFKWLLSDPIKHXXXXXXXXXXXXVKYKD------------IKNAGGQVVYNSTYFTNYSYKGTDWYGYDDTQSVSAKVDYAKGKGLFGYFAWHIEQD 1520 R NF GL+LDW+YP S DK +LVKE R A +ES P LLL++ AG D I S P EL+ +LD++ VMTYDL DGY T +PL K+P +VD I+ W + K + YG ++LSDP K + A + KY D N G V+++ Y+Y+G +W GYD+ +S K + K L G W ++ D Sbjct: 128 RQYNFDGLNLDWQYPGSRGSPPKDKHLFSVLVKEMRKAFEEESVEKDIPRLLLTSTGAGIIDVIKSGYKIP--ELSQSLDYIQVMTYDLHDPKDGY---TGENSPLYKSPYDIGKSADLNVDSIISYWKDHGAASEKLIVGFPA-YGHTFILSDPSKTGIGAPTISTGPPGKYTDESGLLAYYEVCTFLNEGATEVWDAPQEVPYAYQGNEWVGYDNVRSFKLKAQWLKDNNLGGAVVWPLDMD 365
BLAST of rna-TanjilR_06960 vs. DB:Swiss
Match: CHIL4_MOUSE (Chitinase-like protein 4 OS=Mus musculus OX=10090 GN=Chil4 PE=1 SV=2) HSP 1 Score: 90.8929 bits (224), Expect = 2.597e-18 Identity = 76/243 (31.28%), Postives = 113/243 (46.50%), Query Frame = 3 Query: 861 RNNNFHGLDLDWEYP----STGTDKTNLGLLVKEWRAAITQESKTSGKPALLLSAAVAG-SDQITSLQNYPGQELANNLDFLNVMTYDL------FTSDGYPMVTQPPAPLKNPGGQFSVDEGITKWINQXXXXXXXXXXXXXFYGFKWLLSDPIKHXXXXXXXXXXXXVKYKDIK------------NAGGQVVYNSTYFTNYSYKGTDWYGYDDTQSVSAKVDYAKGKGLFGYFAWHIEQD 1520 R NF GL+LDW+YP S DK +LV+E R A +ES + P LLL++ AG D I S P EL+ +LD++ VMTYDL +T + P+ P K+ +VD IT W + K + YG ++LSDP K+ + + KY + + N G ++++T Y+Y G +W GYD+ +S K + K L G W ++ D Sbjct: 128 RQYNFDGLNLDWQYPGSRGSPPKDKHLFSVLVQEMRKAFEEESTLNHIPRLLLTSTGAGFIDVIKSGYKIP--ELSQSLDYIQVMTYDLHDPKNGYTGENSPLYKSPYDIGKS--ADLNVDSIITYWKDHGAASEKLIVGFPA-YGHTFILSDPSKNGIGDPTVSAGPPGKYTNEQGLLAYFEICTFLNEGATEIFDATQEVPYAYLGNEWVGYDNVRSFKLKAQWLKDNNLGGAVVWPLDMD 365
BLAST of rna-TanjilR_06960 vs. DB:Swiss
Match: CHIA_MOUSE (Acidic mammalian chitinase OS=Mus musculus OX=10090 GN=Chia PE=1 SV=2) HSP 1 Score: 89.3521 bits (220), Expect = 1.520e-17 Identity = 78/243 (32.10%), Postives = 112/243 (46.09%), Query Frame = 3 Query: 861 RNNNFHGLDLDWEYP----STGTDKTNLGLLVKEWRAAITQESKTSGKPALLLSAAVAGSDQITSLQ-NYPGQELANNLDFLNVMTYDL------FTSDGYPMVTQPPAPLKNPGGQFSVDEGITKWINQXXXXXXXXXXXXXFYGFKWLLSDPIKHXXXXXXXXXXXXVKYKD------------IKNAGGQVVYNSTYFTNYSYKGTDWYGYDDTQSVSAKVDYAKGKGLFGYFAWHIEQD 1520 R F GLDLDWEYP S DK +LVKE R A QE+ S +P L+++AAVAG I+++Q Y EL+ LDF++VMTYDL +T + P+ P N +VD + W N K + YG ++L +P + + A S A Y +G V++++ Y+YK +W GYD+ +S S K + K G W I+ D Sbjct: 128 RQYGFDGLDLDWEYPGSRGSPPQDKHLFTVLVKEMREAFEQEAIESNRPRLMVTAAVAGG--ISNIQAGYEIPELSKYLDFIHVMTYDLHGSWEGYTGENSPLYKYPTETGSN--AYLNVDYVMNYWKNNGAPAEKLIVGFPE-YGHTFILRNPSDNGIGAPTSGDGPAGPYTRQAGFWAYYEICTFLRSGATEVWDASQEVPYAYKANEWLGYDNIKSFSVKAQWLKQNNFGGAMIWAIDLD 365
BLAST of rna-TanjilR_06960 vs. DB:Swiss
Match: CHIA_RAT (Acidic mammalian chitinase OS=Rattus norvegicus OX=10116 GN=Chia PE=2 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 1.662e-17 Identity = 84/243 (34.57%), Postives = 112/243 (46.09%), Query Frame = 3 Query: 861 RNNNFHGLDLDWEYP----STGTDKTNLGLLVKEWRAAITQESKTSGKPALLLSAAVAGSDQITSLQ-NYPGQELANNLDFLNVMTYDLFTS-DGYPMVTQPPAPLKNPGGQ---FSVDEGITKWINQXXXXXXXXXXXXXFYGFKWLLSDPIKHXXXXXXXXXXXXVKYKDIKNAGGQVVYN-STYFTN-------------YSYKGTDWYGYDDTQSVSAKVDYAKGKGLFGYFAWHIEQD 1520 R F GLDLDWEYP S DK +LVKE R A QE+ S +P L+++AAVA I+++Q Y EL+ LDF++VMTYDL S DGY P L G +VD + W + K + YG ++LS+P + A S A Y + AG Y T+ N Y+YKG +W GYD+ +S S K + K G W I+ D Sbjct: 128 RQYGFDGLDLDWEYPGSRGSPPQDKHLFTVLVKELREAFEQEAIESNRPRLMVTAAVAAG--ISNIQAGYEIPELSQYLDFIHVMTYDLHGSWDGYTGENSPLYKLPTETGSNAYLNVDYVMNYWKDNGAPAEKLIVGFPE-YGHTYILSNPSDTGIGAPTSGNGPAGPYT--RQAGFWAYYEICTFLRNGATQDWDAPQEVPYAYKGNEWVGYDNIKSFSVKAQWLKQNNFGGAMIWAIDLD 365
BLAST of rna-TanjilR_06960 vs. DB:Swiss
Match: CHIT_CAEEL (Probable endochitinase OS=Caenorhabditis elegans OX=6239 GN=cht-1 PE=1 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 1.068e-16 Identity = 78/238 (32.77%), Postives = 120/238 (50.42%), Query Frame = 3 Query: 861 RNNNFHGLDLDWEYPSTGTDKTNLGLLVKEWRAAITQESKTSGKPALLLSAAV-AGSDQITSLQNYPGQELANNLDFLNVMTYDLFTS----DGY--PMVTQPPAPLKNPGGQFSVDEGITKWINQXXXXXXXXXXXXXFYGFKWLLSD-----------PIKHXXXXXXXXXXXXVKYKDIKNAGGQVVYNSTYFTNYSYKGTDWYGYDDTQSVSAKVDYAKGKGLFGYFAWHIEQD 1520 R F G+D+DWEYPS TD N LVKE +AA E+ ++GK LL++AAV AG I + + P LA N DF+ +M+YD F + G+ P+ P + G ++VD W NQ G+P +K+ +G+P YG W L++ P K + Q + ++ ++ G ++S Y +G W+ YDD +S + K+ Y K +G G F W ++ D Sbjct: 167 RTWGFDGIDIDWEYPSGATDMANYVALVKELKAACESEAGSTGKDRLLVTAAVAAGPATIDAGYDIP--NLAPNFDFILLMSYDFFGAWASLVGFNSPLYATTELPAEWNG--WNVDSSARYW-NQKGMPKEKIIVGMPTYGRGWTLNNASAINPGTSGSPAKITQYVQEAGVGAYFEFCEMLANGATRYWDSQSQVPYLVQGNQWWSYDDEESFANKMAYVKREGYGGAFVWTLDFD 399 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_06960 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_06960_La_Tanjil_v1.0 ID=rna-TanjilR_06960_La_Tanjil_v1.0; Name=rna-TanjilR_06960; organism=Lupinus angustifolius; type=mRNA; length=1722bpback to top protein sequence of rna-TanjilR_06960_La_Tanjil_v1.0 >rna-TanjilR_06960_La_Tanjil_v1.0 ID=rna-TanjilR_06960_La_Tanjil_v1.0; Name=rna-TanjilR_06960_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=385bpback to top mRNA from alignment at Chr_LG01-CM007361.1:2118059..2119780- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_06960_La_Tanjil_v1.0 ID=rna-TanjilR_06960_La_Tanjil_v1.0; Name=rna-TanjilR_06960; organism=Lupinus angustifolius; type=mRNA; length=1722bp; location=Sequence derived from: Chr_LG01-CM007361.1:2118059..2119780- (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG01-CM007361.1:2118059..2119780- >rna-TanjilR_06960_La_Tanjil_v1.0 ID=rna-TanjilR_06960_La_Tanjil_v1.0; Name=rna-TanjilR_06960; organism=Lupinus angustifolius; type=CDS; length=1158bp; location=Sequence derived from: Chr_LG01-CM007361.1:2118059..2119780- (Lupinus angustifoliusback to top Annotated Terms
The
following terms have been associated with
this mRNA:
|